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The map label for this gene is ydcL [H]

Identifier: 194738342

GI number: 194738342

Start: 1668258

End: 1668926

Strand: Reverse

Name: ydcL [H]

Synonym: SeSA_A1724

Alternate gene names: 194738342

Gene position: 1668926-1668258 (Counterclockwise)

Preceding gene: 194737760

Following gene: 194735253

Centisome position: 35.44

GC content: 49.33

Gene sequence:

>669_bases
ATGCGTACTCATACTTTATTTAAAGTTGCAGTGCTTACTGGCTTGCTGGCGTTATCCGGCTGTGCGTCCAAAGTCACACA
GCCGGATAAGTATTCTGGATTCTTAAAAAATTATTCGGACCTGCAGGAAACTACCTCCGCCACGGGAAAACCGGTGTTGC
GCTGGGTAGATCCACATTTCAATGACTCTAACTATGACAATATTGTTTACAATCCGATAACGTACTATCCCGTCCCCAAG
CCAACGACCCAGGTCGGGCAGCAAGTTCTTGATAAACTGCTGGCTTATACGAACAGTAAAGTAAAATCAGCAATTGAACA
GCGCAAACCGCTGGTCACGACGCCAGGGCCGCGCAGTTTGATTTTCCGCGGGGCGATTACGGGCGTGGATACCAGCAAAG
AAGGGCTACAATTCTATGAGGTAATCCCTGTAGCGCTGATTGTGGCAGGCACGCAAATGGCGACGGGCCACCGAACCATG
GATACCCACCTTTATTTTGAGGGTGAGCTGATAGATGCCGCGACCAACAAGCCGGTCGTCAAGGTAGTGCGCCAGGGTGA
AGGTCAAGACCTGAGTAATTCCAGTACGCCAATGGCGTTTGAGACGTTGAAACAGGTCGTGGATGATATGGCGACGGATA
CCTCTATGTTTGACGTTAACAAAAAATAG

Upstream 100 bases:

>100_bases
GTTCAAATTGTGCTGTCGTTACCATTTTTAGTGCATCCAGAATGATTTCGTTTTGCTATTATTTCCTTTGCATCATTGCG
AAGACTAAAGGGATCGTTTC

Downstream 100 bases:

>100_bases
TTCTGCGGCGCCATCGCAAGATGGCGCAAACCCCGGCAGATTAGCGGTCGCCATCAGCCAGACAACGATGGGCGGCGCGT
TCTCGTTAATACAGCGTAGC

Product: putative lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MRTHTLFKVAVLTGLLALSGCASKVTQPDKYSGFLKNYSDLQETTSATGKPVLRWVDPHFNDSNYDNIVYNPITYYPVPK
PTTQVGQQVLDKLLAYTNSKVKSAIEQRKPLVTTPGPRSLIFRGAITGVDTSKEGLQFYEVIPVALIVAGTQMATGHRTM
DTHLYFEGELIDAATNKPVVKVVRQGEGQDLSNSSTPMAFETLKQVVDDMATDTSMFDVNKK

Sequences:

>Translated_222_residues
MRTHTLFKVAVLTGLLALSGCASKVTQPDKYSGFLKNYSDLQETTSATGKPVLRWVDPHFNDSNYDNIVYNPITYYPVPK
PTTQVGQQVLDKLLAYTNSKVKSAIEQRKPLVTTPGPRSLIFRGAITGVDTSKEGLQFYEVIPVALIVAGTQMATGHRTM
DTHLYFEGELIDAATNKPVVKVVRQGEGQDLSNSSTPMAFETLKQVVDDMATDTSMFDVNKK
>Mature_222_residues
MRTHTLFKVAVLTGLLALSGCASKVTQPDKYSGFLKNYSDLQETTSATGKPVLRWVDPHFNDSNYDNIVYNPITYYPVPK
PTTQVGQQVLDKLLAYTNSKVKSAIEQRKPLVTTPGPRSLIFRGAITGVDTSKEGLQFYEVIPVALIVAGTQMATGHRTM
DTHLYFEGELIDAATNKPVVKVVRQGEGQDLSNSSTPMAFETLKQVVDDMATDTSMFDVNKK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787701, Length=222, Percent_Identity=83.3333333333333, Blast_Score=397, Evalue=1e-112,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021747 [H]

Pfam domain/function: PF11769 DUF3313 [H]

EC number: NA

Molecular weight: Translated: 24452; Mature: 24452

Theoretical pI: Translated: 8.39; Mature: 8.39

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTHTLFKVAVLTGLLALSGCASKVTQPDKYSGFLKNYSDLQETTSATGKPVLRWVDPHF
CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
NDSNYDNIVYNPITYYPVPKPTTQVGQQVLDKLLAYTNSKVKSAIEQRKPLVTTPGPRSL
CCCCCCCEEECCEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEECCCCHHE
IFRGAITGVDTSKEGLQFYEVIPVALIVAGTQMATGHRTMDTHLYFEGELIDAATNKPVV
EEEEEECCCCCCHHHHHHHHHHHHHHHHHCCHHCCCCCEECEEEEEECEEECCCCCCHHH
KVVRQGEGQDLSNSSTPMAFETLKQVVDDMATDTSMFDVNKK
HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MRTHTLFKVAVLTGLLALSGCASKVTQPDKYSGFLKNYSDLQETTSATGKPVLRWVDPHF
CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
NDSNYDNIVYNPITYYPVPKPTTQVGQQVLDKLLAYTNSKVKSAIEQRKPLVTTPGPRSL
CCCCCCCEEECCEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEECCCCHHE
IFRGAITGVDTSKEGLQFYEVIPVALIVAGTQMATGHRTMDTHLYFEGELIDAATNKPVV
EEEEEECCCCCCHHHHHHHHHHHHHHHHHCCHHCCCCCEECEEEEEECEEECCCCCCHHH
KVVRQGEGQDLSNSSTPMAFETLKQVVDDMATDTSMFDVNKK
HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]