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The map label for this gene is ydcN [H]

Identifier: 194735253

GI number: 194735253

Start: 1666398

End: 1666955

Strand: Reverse

Name: ydcN [H]

Synonym: SeSA_A1722

Alternate gene names: 194735253

Gene position: 1666955-1666398 (Counterclockwise)

Preceding gene: 194738342

Following gene: 194735780

Centisome position: 35.4

GC content: 53.23

Gene sequence:

>558_bases
ATGGTCTTACTGGGGGGAAAAATGGATAACCTGACACACTATCTGGCGACCACGTTAAGAACGTTACGCCATCAGCGAGG
CTGGAGTTTATCGCGTCTGGCGGAGATCTCCGGCGTCTCAAAAGCCATGTTAGGGCAGATAGAGCGTAATGAATCCAGCC
CGACAGTCGCAACGCTGTGGAAAATTGCGACGGGCCTGAACGTTCCATTCTCAATGTTTATTTCGCCTCCGCAGGCCGAA
TTTCCGCCAACCTTCGATCCCCAGCAGCAAGCGATGGTAATCACACCGCTGTTTCCGTGGGACCCTGAACTCTGTTTTGA
CTATTTTTCTCTATTGCTGGCGCCTGGCGCGGTCAGCGAATCAGCGCCGCATAAAGCCGGCGTTATCGAACATGTGGTGG
TGATTCAGGGTCGGCTGGACATGTGTACTGGTGGGGTATGGCAAACCATAGACGCCGGTAAAGGTTTGCGTTTTGCCGGC
GATACGGCGCATACCTATCGCAACAGCAGTGACCAGACGGTTCATTTTCACTCGCTGATCCATTACCCGCGTGATTAA

Upstream 100 bases:

>100_bases
AGTAGGTAACGGCAGTGATAACAGACGCATGATCGCCTCTTGTGCGTTATAACGGTCAGTCAATGTAGCATTGTGCGTTA
TAGCGTACAAGTGATACGCT

Downstream 100 bases:

>100_bases
GCGGGAAAACTATTTCGTTAGTTTGCGCTTCTGACTACAATAGCCGCCATTTCGCTGCTATTGGATAAGAAAGACTGTAT
GCGCCAGCAACCTCACTATC

Product: transcriptional regulator, XRE family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MVLLGGKMDNLTHYLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMFISPPQAE
FPPTFDPQQQAMVITPLFPWDPELCFDYFSLLLAPGAVSESAPHKAGVIEHVVVIQGRLDMCTGGVWQTIDAGKGLRFAG
DTAHTYRNSSDQTVHFHSLIHYPRD

Sequences:

>Translated_185_residues
MVLLGGKMDNLTHYLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMFISPPQAE
FPPTFDPQQQAMVITPLFPWDPELCFDYFSLLLAPGAVSESAPHKAGVIEHVVVIQGRLDMCTGGVWQTIDAGKGLRFAG
DTAHTYRNSSDQTVHFHSLIHYPRD
>Mature_185_residues
MVLLGGKMDNLTHYLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMFISPPQAE
FPPTFDPQQQAMVITPLFPWDPELCFDYFSLLLAPGAVSESAPHKAGVIEHVVVIQGRLDMCTGGVWQTIDAGKGLRFAG
DTAHTYRNSSDQTVHFHSLIHYPRD

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=177, Percent_Identity=72.8813559322034, Blast_Score=285, Evalue=1e-78,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 20476; Mature: 20476

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLLGGKMDNLTHYLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLW
CEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
KIATGLNVPFSMFISPPQAEFPPTFDPQQQAMVITPLFPWDPELCFDYFSLLLAPGAVSE
HHHHCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCC
SAPHKAGVIEHVVVIQGRLDMCTGGVWQTIDAGKGLRFAGDTAHTYRNSSDQTVHFHSLI
CCCCCCCHHHEEEEECCCCCHHCCCCCEECCCCCCCEECCCCHHHHCCCCCCEEEEHHHH
HYPRD
CCCCC
>Mature Secondary Structure
MVLLGGKMDNLTHYLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLW
CEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
KIATGLNVPFSMFISPPQAEFPPTFDPQQQAMVITPLFPWDPELCFDYFSLLLAPGAVSE
HHHHCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCC
SAPHKAGVIEHVVVIQGRLDMCTGGVWQTIDAGKGLRFAGDTAHTYRNSSDQTVHFHSLI
CCCCCCCHHHEEEEECCCCCHHCCCCCEECCCCCCCEECCCCHHHHCCCCCCEEEEHHHH
HYPRD
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]