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The map label for this gene is arnD [H]

Identifier: 194738251

GI number: 194738251

Start: 2413974

End: 2414873

Strand: Direct

Name: arnD [H]

Synonym: SeSA_A2528

Alternate gene names: 194738251

Gene position: 2413974-2414873 (Clockwise)

Preceding gene: 194736015

Following gene: 194734205

Centisome position: 51.26

GC content: 57.0

Gene sequence:

>900_bases
ATGACGAAAGTCGGTTTACGCATTGATGTTGATACCTTGCGAGGAACGCGTGAAGGTGTTCCCCGGCTGCTGGAGACATT
GCATCGCCACGGCGTTCAGGCCAGCTTTTTCTTCAGCGTCGGGCCGGACAATATGGGACGCCATCTTTGGCGTCTGATAA
AACCGCGATTTTTATGGAAAATGCTACGTTCAAACGCCGCCTCGCTCTACGGCTGGGATATCCTGCTGGCCGGTACCGCC
TGGCCGGGAAAAAATATCGGCAACGCCAATGCCGGGATTATTCGTGAAACGGCAACATACCATGAGACGGGACTACATGC
CTGGGATCACCATGCATGGCAGACTCACAGCGGCCACTGGAGTATTCGTCAGCTTGAAGAAGATATCGCGCGCGGCATAA
CGGCGCTTGAGGCCATTATCGGAAAACCCGTCACCTGCTCAGCTGCGGCCGGCTGGCGAGCGGATGGGCGCGTTGTTCGT
GCGAAAGAGCCGTTCAACCTGCGGTATAACAGCGATTGCCGTGGAACCACCTTATTCCGTCCGCTACTGATGCCGGGCCA
GACCGGGACGCCGCAAATCCCCGTTACCTTACCCACGTGGGATGAGGTTATCGGCCCCGCCGTTCAGGCGCAGTCGTTCA
ATACCTGGATTATCTCTCGTATGTTGCAGGACAAAGGCACGCCGGTATATACCATCCATGCGGAAGTCGAAGGCATTGTC
CATCAGCCGCTGTTTGAAGATTTGCTCGTTCGTGCACGTGACGCGGGGATCACCTTTTGTCCTCTGGGCGAACTGCTGCC
GACATCGCCTGAGTCTCTGCCGTTGGGGCAAATTGTACGTGGACACATCCCTGGCCGTGAAGGTTGGCTGGGGTGTCAAC
AGGCCGCGAGCGCCTCATGA

Upstream 100 bases:

>100_bases
GGCGCTGTCTGGACTGGGAACCGTCTATTGCGATGCGGGATACGGTTGAAGAAACGCTGGACTTCTTTTTGCGCAGCGTA
GATATCGCGGAACGCGCATC

Downstream 100 bases:

>100_bases
TGAAATCGATACGCTATTATCTGGCTTTCGCCGCGTTTATCGCGCTCTACTATGTTATTCCTGTCAATAGCCGTCTGCTC
TGGCAGCCGGATGAAACGCG

Product: polysaccharide deacetylase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MTKVGLRIDVDTLRGTREGVPRLLETLHRHGVQASFFFSVGPDNMGRHLWRLIKPRFLWKMLRSNAASLYGWDILLAGTA
WPGKNIGNANAGIIRETATYHETGLHAWDHHAWQTHSGHWSIRQLEEDIARGITALEAIIGKPVTCSAAAGWRADGRVVR
AKEPFNLRYNSDCRGTTLFRPLLMPGQTGTPQIPVTLPTWDEVIGPAVQAQSFNTWIISRMLQDKGTPVYTIHAEVEGIV
HQPLFEDLLVRARDAGITFCPLGELLPTSPESLPLGQIVRGHIPGREGWLGCQQAASAS

Sequences:

>Translated_299_residues
MTKVGLRIDVDTLRGTREGVPRLLETLHRHGVQASFFFSVGPDNMGRHLWRLIKPRFLWKMLRSNAASLYGWDILLAGTA
WPGKNIGNANAGIIRETATYHETGLHAWDHHAWQTHSGHWSIRQLEEDIARGITALEAIIGKPVTCSAAAGWRADGRVVR
AKEPFNLRYNSDCRGTTLFRPLLMPGQTGTPQIPVTLPTWDEVIGPAVQAQSFNTWIISRMLQDKGTPVYTIHAEVEGIV
HQPLFEDLLVRARDAGITFCPLGELLPTSPESLPLGQIVRGHIPGREGWLGCQQAASAS
>Mature_298_residues
TKVGLRIDVDTLRGTREGVPRLLETLHRHGVQASFFFSVGPDNMGRHLWRLIKPRFLWKMLRSNAASLYGWDILLAGTAW
PGKNIGNANAGIIRETATYHETGLHAWDHHAWQTHSGHWSIRQLEEDIARGITALEAIIGKPVTCSAAAGWRADGRVVRA
KEPFNLRYNSDCRGTTLFRPLLMPGQTGTPQIPVTLPTWDEVIGPAVQAQSFNTWIISRMLQDKGTPVYTIHAEVEGIVH
QPLFEDLLVRARDAGITFCPLGELLPTSPESLPLGQIVRGHIPGREGWLGCQQAASAS

Specific function: Catalyzes the deformylation of 4-deoxy-4-formamido-L- arabinose-phosphoundecaprenol to 4-amino-4-deoxy-L-arabinose- phosphoundecaprenol. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial p

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family. ArnD deformylase subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788590, Length=298, Percent_Identity=73.489932885906, Blast_Score=456, Evalue=1e-129,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 33108; Mature: 32977

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKVGLRIDVDTLRGTREGVPRLLETLHRHGVQASFFFSVGPDNMGRHLWRLIKPRFLWK
CCCCEEEEEHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH
MLRSNAASLYGWDILLAGTAWPGKNIGNANAGIIRETATYHETGLHAWDHHAWQTHSGHW
HHHHCCCCEECEEEEEEECCCCCCCCCCCCCCEEECCHHHHHCCCCHHHCCCCCCCCCCC
SIRQLEEDIARGITALEAIIGKPVTCSAAAGWRADGRVVRAKEPFNLRYNSDCRGTTLFR
HHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCEEEEECCCCCCEECCCCCCCHHHH
PLLMPGQTGTPQIPVTLPTWDEVIGPAVQAQSFNTWIISRMLQDKGTPVYTIHAEVEGIV
HHCCCCCCCCCEEEEECCCHHHHHCCHHHHCCCHHHHHHHHHHHCCCEEEEEEECHHHHH
HQPLFEDLLVRARDAGITFCPLGELLPTSPESLPLGQIVRGHIPGREGWLGCQQAASAS
HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHCCCC
>Mature Secondary Structure 
TKVGLRIDVDTLRGTREGVPRLLETLHRHGVQASFFFSVGPDNMGRHLWRLIKPRFLWK
CCCEEEEEHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH
MLRSNAASLYGWDILLAGTAWPGKNIGNANAGIIRETATYHETGLHAWDHHAWQTHSGHW
HHHHCCCCEECEEEEEEECCCCCCCCCCCCCCEEECCHHHHHCCCCHHHCCCCCCCCCCC
SIRQLEEDIARGITALEAIIGKPVTCSAAAGWRADGRVVRAKEPFNLRYNSDCRGTTLFR
HHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCEEEEECCCCCCEECCCCCCCHHHH
PLLMPGQTGTPQIPVTLPTWDEVIGPAVQAQSFNTWIISRMLQDKGTPVYTIHAEVEGIV
HHCCCCCCCCCEEEEECCCHHHHHCCHHHHCCCHHHHHHHHHHHCCCEEEEEEECHHHHH
HQPLFEDLLVRARDAGITFCPLGELLPTSPESLPLGQIVRGHIPGREGWLGCQQAASAS
HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA