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The map label for this gene is fim [H]

Identifier: 194738133

GI number: 194738133

Start: 207277

End: 207828

Strand: Reverse

Name: fim [H]

Synonym: SeSA_A0196

Alternate gene names: 194738133

Gene position: 207828-207277 (Counterclockwise)

Preceding gene: 194737507

Following gene: 194736071

Centisome position: 4.41

GC content: 51.09

Gene sequence:

>552_bases
ATGAAACTCACCTTAAAAATACTCGCTGTGGCACTGGCTGCCATCACCCTCTCCCCCGCCGCGCTGGCAGACACCGCCAA
AGACGGCACCGTACATATCACCGGCCTCATTCAGCAAAACGCCTGTACGGTAAAAACGGATTCAGTATTAATAGAAGTGA
CATTAAAGGACGAATTTGCCTCTATTTTTACTGCCGCAGGGCAAACGGCAGGGGATAAAGGCTTCACCATCGATCTCGAA
AACTGCGACGCAAACATCTACAGCAATGTACAGGCGCGCTTTGAAGGTACGCTCGACGGAACCGATGCGACCATCCTGAA
AAATGATGCTGATGCTCAGAATATTGGCGTGCAAATTCTTGATAAAACGGGTGACAGTACGCCAGTGACCTTTAACGATC
TTCAGGCATGGTCTTCCGCAGTCGCGCTCCCTACAGAAGAGGGGGTGACGACACTCTCAATGCCTTTCACCGCCCGCTAT
ATCGCCACCGCGGTTCCCGTTGGGTCGGGAAATGTCGATGCAAGCGCAACATTCTATCTGCAATATAACTGA

Upstream 100 bases:

>100_bases
ATCATATTTACTCATTCGGGAATAAAAAGAACAATAACTTTCCACACAATAAATATTGCTACTATGTCAATATTTATAAT
ATCTTAAAGGATCAAAGATA

Downstream 100 bases:

>100_bases
TCCTGGCGGCCAGCGTCGGCTGGCCCATTTGTTTATTGAGGTCATCAATGAATTCATTGGCTAAAGCAGGGTTGCTTTGT
TGCCTGTTGTGCGGTTCGCT

Product: putative fimbrial protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MKLTLKILAVALAAITLSPAALADTAKDGTVHITGLIQQNACTVKTDSVLIEVTLKDEFASIFTAAGQTAGDKGFTIDLE
NCDANIYSNVQARFEGTLDGTDATILKNDADAQNIGVQILDKTGDSTPVTFNDLQAWSSAVALPTEEGVTTLSMPFTARY
IATAVPVGSGNVDASATFYLQYN

Sequences:

>Translated_183_residues
MKLTLKILAVALAAITLSPAALADTAKDGTVHITGLIQQNACTVKTDSVLIEVTLKDEFASIFTAAGQTAGDKGFTIDLE
NCDANIYSNVQARFEGTLDGTDATILKNDADAQNIGVQILDKTGDSTPVTFNDLQAWSSAVALPTEEGVTTLSMPFTARY
IATAVPVGSGNVDASATFYLQYN
>Mature_183_residues
MKLTLKILAVALAAITLSPAALADTAKDGTVHITGLIQQNACTVKTDSVLIEVTLKDEFASIFTAAGQTAGDKGFTIDLE
NCDANIYSNVQARFEGTLDGTDATILKNDADAQNIGVQILDKTGDSTPVTFNDLQAWSSAVALPTEEGVTTLSMPFTARY
IATAVPVGSGNVDASATFYLQYN

Specific function: Involved In Regulation Of Length And Mediation Of Adhesion Of Type 1 Fimbriae (But Not Necessary For The Production Of Fimbriae). Involved In The Integration Of Fimh In The Fimbriae. [C]

COG id: COG3539

COG function: function code NU; P pilus assembly protein, pilin FimA

Gene ontology:

Cell location: Fimbrium (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

Organism=Escherichia coli, GI1790773, Length=160, Percent_Identity=33.125, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1787781, Length=158, Percent_Identity=32.9113924050633, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1790769, Length=159, Percent_Identity=37.1069182389937, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI87081753, Length=159, Percent_Identity=32.0754716981132, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI87081805, Length=161, Percent_Identity=32.2981366459627, Blast_Score=61, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 19169; Mature: 19169

Theoretical pI: Translated: 4.02; Mature: 4.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLTLKILAVALAAITLSPAALADTAKDGTVHITGLIQQNACTVKTDSVLIEVTLKDEFA
CEEHHHHHHHHHHHHHCCCHHHHCCCCCCEEEEEEEEECCCEEEEECCEEEEEEECCHHH
SIFTAAGQTAGDKGFTIDLENCDANIYSNVQARFEGTLDGTDATILKNDADAQNIGVQIL
HHHHHCCCCCCCCCCEEEECCCCCCEECCEEEEEEEEECCCCEEEEECCCCCCCCCEEEE
DKTGDSTPVTFNDLQAWSSAVALPTEEGVTTLSMPFTARYIATAVPVGSGNVDASATFYL
ECCCCCCCEEEHHHHHHHHEEECCCCCCCEEEECCCCEEEEEEEEECCCCCCCCEEEEEE
QYN
EEC
>Mature Secondary Structure
MKLTLKILAVALAAITLSPAALADTAKDGTVHITGLIQQNACTVKTDSVLIEVTLKDEFA
CEEHHHHHHHHHHHHHCCCHHHHCCCCCCEEEEEEEEECCCEEEEECCEEEEEEECCHHH
SIFTAAGQTAGDKGFTIDLENCDANIYSNVQARFEGTLDGTDATILKNDADAQNIGVQIL
HHHHHCCCCCCCCCCEEEECCCCCCEECCEEEEEEEEECCCCEEEEECCCCCCCCCEEEE
DKTGDSTPVTFNDLQAWSSAVALPTEEGVTTLSMPFTARYIATAVPVGSGNVDASATFYL
ECCCCCCCEEEHHHHHHHHEEECCCCCCCEEEECCCCEEEEEEEEECCCCCCCCEEEEEE
QYN
EEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2456966; 6120941 [H]