Click here to switch to the map view.

The map label for this gene is 194738070

Identifier: 194738070

GI number: 194738070

Start: 311112

End: 311936

Strand: Reverse

Name: 194738070

Synonym: SeSA_A0300

Alternate gene names: NA

Gene position: 311936-311112 (Counterclockwise)

Preceding gene: 194734411

Following gene: 194737470

Centisome position: 6.62

GC content: 59.64

Gene sequence:

>825_bases
ATGAAAAAAACTGACACGCTTCCTGCTACCCTGTCCGCGCTGATACAGGAATACTCTATTGCGGAGGGGATTCAGATGGC
GGAGCAGCAGGTTCGGGAAAATCCGGCGAAAGCGCTCTGCCGCCACAGCCTGTTTCAGTTGCTGTGTGTGGCCGGAGACT
GGTCGCGGGCGCTACACCAGCTTCAGCTATGCGCCAGGATGGAGGCCAATTATACCCAGGAGGCCCGGCTGTACCGGGAG
CTGGTTCGCTGCGAAATGTTCCGCCGCACCGTTTTTCAGGGTGAACAACGACCCGGTTTTCTTCTGCCGCAGCCCGTTTG
GGTGGAGTCACTGCTGGCGGCACTCGCCTGTCATGACGATACCGGTGAGGTTGATAAACACCGTAATACCGCACTGGAAG
CCATAACAGACACGGGCGGGCAGTGGAACGGCGGCGCATTTGACTGGGCGAGCGACAGCGATTCCCGCCTTGGCCCGGTA
CTTGAGCTGGTCACCGGCGGCGTGTATATCTGGCTACCGTTTTCGCAAATACGCTCGCTGGAATCGCCGCAACCGACGCG
CCTGACCGATCTGCTGTGGAAACCCATTAATATCACCCTGATGAATGGCGATACGCACGGCGCCTGGCTCTTTACCCGTT
ACAGCGGTTCGGAAAGTGCATCTGACGCCCTGCGTCTGTGCCGGGAAACCGCCTGGCAGGACGGCCCCGGCGAAACCACC
GTGCGGGCGCTGGGGCAGAAAGTGTGGCTGACCAGCCACGGCGATATCAGCCTGCTGGACATGGCCCATTGTACCTTTCA
TGCTCAGGAAAACGATGGCGCATGA

Upstream 100 bases:

>100_bases
AGCGAGATACTGCCCGATCTGACCCGCCGCGAGCATCGTATTATTGGCATCGACAGCCACTACCGAATCACTCCGACACA
GAAAAATGGAAATACCGCCC

Downstream 100 bases:

>100_bases
GCACGTCTCGTTTTACACCCGCTAACCACCTGCTGCCCACCCTATTTGATCGGCTGTGTGACAATGCTCCGTATCAGAAA
ATTGACCGGGGTATCAGCGT

Product: SciE protein

Products: NA

Alternate protein names: ImpE Family Protein; Cytoplasmic Protein; Type VI Secretion System Protein ImpE; SciE Type Virulence Protein; ImpE-Like Protein; Virulence-Island/Protein Involved In Nitrogen Fixation; Virulence Protein SciE Type Family Protein; ImpE Family T6SS E; ImpE Protein Superfamily Protein; Secretion Protein; ImpE Protein; Cytoplasmic Protein SciE; Protein Of Avirulence Locus ImpE

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MKKTDTLPATLSALIQEYSIAEGIQMAEQQVRENPAKALCRHSLFQLLCVAGDWSRALHQLQLCARMEANYTQEARLYRE
LVRCEMFRRTVFQGEQRPGFLLPQPVWVESLLAALACHDDTGEVDKHRNTALEAITDTGGQWNGGAFDWASDSDSRLGPV
LELVTGGVYIWLPFSQIRSLESPQPTRLTDLLWKPINITLMNGDTHGAWLFTRYSGSESASDALRLCRETAWQDGPGETT
VRALGQKVWLTSHGDISLLDMAHCTFHAQENDGA

Sequences:

>Translated_274_residues
MKKTDTLPATLSALIQEYSIAEGIQMAEQQVRENPAKALCRHSLFQLLCVAGDWSRALHQLQLCARMEANYTQEARLYRE
LVRCEMFRRTVFQGEQRPGFLLPQPVWVESLLAALACHDDTGEVDKHRNTALEAITDTGGQWNGGAFDWASDSDSRLGPV
LELVTGGVYIWLPFSQIRSLESPQPTRLTDLLWKPINITLMNGDTHGAWLFTRYSGSESASDALRLCRETAWQDGPGETT
VRALGQKVWLTSHGDISLLDMAHCTFHAQENDGA
>Mature_274_residues
MKKTDTLPATLSALIQEYSIAEGIQMAEQQVRENPAKALCRHSLFQLLCVAGDWSRALHQLQLCARMEANYTQEARLYRE
LVRCEMFRRTVFQGEQRPGFLLPQPVWVESLLAALACHDDTGEVDKHRNTALEAITDTGGQWNGGAFDWASDSDSRLGPV
LELVTGGVYIWLPFSQIRSLESPQPTRLTDLLWKPINITLMNGDTHGAWLFTRYSGSESASDALRLCRETAWQDGPGETT
VRALGQKVWLTSHGDISLLDMAHCTFHAQENDGA

Specific function: Unknown

COG id: COG4455

COG function: function code R; Protein of avirulence locus involved in temperature-dependent protein secretion

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30632; Mature: 30632

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTDTLPATLSALIQEYSIAEGIQMAEQQVRENPAKALCRHSLFQLLCVAGDWSRALHQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHH
LQLCARMEANYTQEARLYRELVRCEMFRRTVFQGEQRPGFLLPQPVWVESLLAALACHDD
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCC
TGEVDKHRNTALEAITDTGGQWNGGAFDWASDSDSRLGPVLELVTGGVYIWLPFSQIRSL
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEEEHHHHHCC
ESPQPTRLTDLLWKPINITLMNGDTHGAWLFTRYSGSESASDALRLCRETAWQDGPGETT
CCCCCCHHHHHHCCCEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCHHH
VRALGQKVWLTSHGDISLLDMAHCTFHAQENDGA
HHHHCHHEEEECCCCEEEEEHHHHEEECCCCCCC
>Mature Secondary Structure
MKKTDTLPATLSALIQEYSIAEGIQMAEQQVRENPAKALCRHSLFQLLCVAGDWSRALHQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHH
LQLCARMEANYTQEARLYRELVRCEMFRRTVFQGEQRPGFLLPQPVWVESLLAALACHDD
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCC
TGEVDKHRNTALEAITDTGGQWNGGAFDWASDSDSRLGPVLELVTGGVYIWLPFSQIRSL
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEEEHHHHHCC
ESPQPTRLTDLLWKPINITLMNGDTHGAWLFTRYSGSESASDALRLCRETAWQDGPGETT
CCCCCCHHHHHHCCCEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCHHH
VRALGQKVWLTSHGDISLLDMAHCTFHAQENDGA
HHHHCHHEEEECCCCEEEEEHHHHEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA