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The map label for this gene is hoxK [H]

Identifier: 194737982

GI number: 194737982

Start: 1581260

End: 1582363

Strand: Reverse

Name: hoxK [H]

Synonym: SeSA_A1643

Alternate gene names: 194737982

Gene position: 1582363-1581260 (Counterclockwise)

Preceding gene: 194735244

Following gene: 194734103

Centisome position: 33.6

GC content: 52.26

Gene sequence:

>1104_bases
ATGCAAACACAAGATACATTTTATCAAGTTATGCGTAGACACGGCGTGACAAGGCGTAGCTTCCTCAAGTTTTGCAGCCT
TACCGCAACGTCTTTAGGCCTGAGCAGTTCGATGATTCCTCAGATAGCTTATGCCCTGGAGAATAAACCGCGTACGCCAG
TGATATGGCTGCATGGTCTTGAATGTACCTGCTGTACCGAGTCTTTCATTCGCTCTGCGCACCCGTTGGCAAAAGATGCC
ATTCTGTCGCTCATTTCCCTGGATTATGACGACACCATTATGGCCGCCGCAGGGCAACAAGCCGAGCAGGCGTTGGCGGA
TGTGATGCGCGAGTACAAAGGAAATTATATCGTTGCCGTGGAAGGTAATGCGCCGCTGAATGAAGATGGGATGTTTTGCA
TACTGGCTGGCGAGCCGTTCCTGGAGAAGTTAAAACGCGTCAGCGCGGATGCTAAAGCGATTATCGCCTGGGGGTCCTGC
GCATCATGGGGCTGCGTGCAGGCAGCCCGTCCCAACCCAACTAAAGCCACGCCGGTTCACAAATTAATTACCGATAAACC
CATTATTAAAGTGCCAGGCTGCCCGCCTATACCTGAAGTGATGTCCGCCGTTATCACCTATATGCTGGCATTTGATCGCA
TCCCTCCCCTTGATCGTCTTGGACGACCAAAAATGTTTTATGGCCAGCGAATTCATGACAAATGCTACCGACGCGCGCAT
TTCGATGCCGGTCAGTTTGTGGAAGCGTGGGATGACGAAGGTGCCAGAAAAGGGTATTGCCTGTACAAGATGGGCTGTAA
AGGCCCGACCACCTATAACGCCTGTTCAACCGTTCGCTGGAATGATGGCGTGTCTTTTCCTATCCAGTCAGGTCATGGAT
GCCTCGGATGTTCGGAAGATGGATTCTGGGATTACGGTTCTTTTTACAGCCGGGCAACGGGCATTCCGCAAACCGGCATT
GAGGCTACCGCCGATAAAATCGGACTGGGCGTTGCCGGCGTCGCGGGCGCTGCCGCCATCGCTCACGCCACGGTGAGCGC
CATAAAACATGCCCGCAATAAAAACAACACGTCATCAGAAAACGCTCCGGAAGAGAAAAAATAA

Upstream 100 bases:

>100_bases
TTACGAATTAGAAACATAATTGCTACTAAAACACGTTGAGAAAGACAAGAAATGCAACATATGATGCCCACACTAACTAT
AGTGGTTTGGGATAAACGTT

Downstream 100 bases:

>100_bases
TTATGGCATATCCTTATCAGACTCAGGGTTTTACGCTGGACAATAGCGGACGACGAATTGTGGTCGATCCGGTTACTCGC
ATCGAAGGGCATATGCGCTG

Product: uptake hydrogenase small subunit

Products: NA

Alternate protein names: Hydrogenlyase; Membrane-bound hydrogenase small subunit [H]

Number of amino acids: Translated: 367; Mature: 367

Protein sequence:

>367_residues
MQTQDTFYQVMRRHGVTRRSFLKFCSLTATSLGLSSSMIPQIAYALENKPRTPVIWLHGLECTCCTESFIRSAHPLAKDA
ILSLISLDYDDTIMAAAGQQAEQALADVMREYKGNYIVAVEGNAPLNEDGMFCILAGEPFLEKLKRVSADAKAIIAWGSC
ASWGCVQAARPNPTKATPVHKLITDKPIIKVPGCPPIPEVMSAVITYMLAFDRIPPLDRLGRPKMFYGQRIHDKCYRRAH
FDAGQFVEAWDDEGARKGYCLYKMGCKGPTTYNACSTVRWNDGVSFPIQSGHGCLGCSEDGFWDYGSFYSRATGIPQTGI
EATADKIGLGVAGVAGAAAIAHATVSAIKHARNKNNTSSENAPEEKK

Sequences:

>Translated_367_residues
MQTQDTFYQVMRRHGVTRRSFLKFCSLTATSLGLSSSMIPQIAYALENKPRTPVIWLHGLECTCCTESFIRSAHPLAKDA
ILSLISLDYDDTIMAAAGQQAEQALADVMREYKGNYIVAVEGNAPLNEDGMFCILAGEPFLEKLKRVSADAKAIIAWGSC
ASWGCVQAARPNPTKATPVHKLITDKPIIKVPGCPPIPEVMSAVITYMLAFDRIPPLDRLGRPKMFYGQRIHDKCYRRAH
FDAGQFVEAWDDEGARKGYCLYKMGCKGPTTYNACSTVRWNDGVSFPIQSGHGCLGCSEDGFWDYGSFYSRATGIPQTGI
EATADKIGLGVAGVAGAAAIAHATVSAIKHARNKNNTSSENAPEEKK
>Mature_367_residues
MQTQDTFYQVMRRHGVTRRSFLKFCSLTATSLGLSSSMIPQIAYALENKPRTPVIWLHGLECTCCTESFIRSAHPLAKDA
ILSLISLDYDDTIMAAAGQQAEQALADVMREYKGNYIVAVEGNAPLNEDGMFCILAGEPFLEKLKRVSADAKAIIAWGSC
ASWGCVQAARPNPTKATPVHKLITDKPIIKVPGCPPIPEVMSAVITYMLAFDRIPPLDRLGRPKMFYGQRIHDKCYRRAH
FDAGQFVEAWDDEGARKGYCLYKMGCKGPTTYNACSTVRWNDGVSFPIQSGHGCLGCSEDGFWDYGSFYSRATGIPQTGI
EATADKIGLGVAGVAGAAAIAHATVSAIKHARNKNNTSSENAPEEKK

Specific function: This enzyme recycles the H(2) produced by nitrogenase to increase the production of ATP and to protect nitrogenase against inhibition or damage by O(2) under carbon- or phosphate-limited conditions [H]

COG id: COG1740

COG function: function code C; Ni,Fe-hydrogenase I small subunit

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the [NiFe]/[NiFeSe] hydrogenase small subunit family [H]

Homologues:

Organism=Escherichia coli, GI1787206, Length=371, Percent_Identity=72.5067385444744, Blast_Score=560, Evalue=1e-161,
Organism=Escherichia coli, GI1789371, Length=310, Percent_Identity=41.2903225806452, Blast_Score=276, Evalue=2e-75,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006137
- InterPro:   IPR001821
- InterPro:   IPR006311 [H]

Pfam domain/function: PF01058 Oxidored_q6 [H]

EC number: =1.12.99.6 [H]

Molecular weight: Translated: 40030; Mature: 40030

Theoretical pI: Translated: 8.08; Mature: 8.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTQDTFYQVMRRHGVTRRSFLKFCSLTATSLGLSSSMIPQIAYALENKPRTPVIWLHGL
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEECC
ECTCCTESFIRSAHPLAKDAILSLISLDYDDTIMAAAGQQAEQALADVMREYKGNYIVAV
CHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHCCCEEEEE
EGNAPLNEDGMFCILAGEPFLEKLKRVSADAKAIIAWGSCASWGCVQAARPNPTKATPVH
CCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHH
KLITDKPIIKVPGCPPIPEVMSAVITYMLAFDRIPPLDRLGRPKMFYGQRIHDKCYRRAH
HHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHC
FDAGQFVEAWDDEGARKGYCLYKMGCKGPTTYNACSTVRWNDGVSFPIQSGHGCLGCSED
CCCCHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCC
GFWDYGSFYSRATGIPQTGIEATADKIGLGVAGVAGAAAIAHATVSAIKHARNKNNTSSE
CCCCCHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
NAPEEKK
CCCCCCC
>Mature Secondary Structure
MQTQDTFYQVMRRHGVTRRSFLKFCSLTATSLGLSSSMIPQIAYALENKPRTPVIWLHGL
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEECC
ECTCCTESFIRSAHPLAKDAILSLISLDYDDTIMAAAGQQAEQALADVMREYKGNYIVAV
CHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHCCCEEEEE
EGNAPLNEDGMFCILAGEPFLEKLKRVSADAKAIIAWGSCASWGCVQAARPNPTKATPVH
CCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHH
KLITDKPIIKVPGCPPIPEVMSAVITYMLAFDRIPPLDRLGRPKMFYGQRIHDKCYRRAH
HHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHC
FDAGQFVEAWDDEGARKGYCLYKMGCKGPTTYNACSTVRWNDGVSFPIQSGHGCLGCSED
CCCCHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCC
GFWDYGSFYSRATGIPQTGIEATADKIGLGVAGVAGAAAIAHATVSAIKHARNKNNTSSE
CCCCCHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
NAPEEKK
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1383192; 12948488; 2493816 [H]