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The map label for this gene is rnfC [H]

Identifier: 194737944

GI number: 194737944

Start: 2108463

End: 2109818

Strand: Direct

Name: rnfC [H]

Synonym: SeSA_A2223

Alternate gene names: 194737944

Gene position: 2108463-2109818 (Clockwise)

Preceding gene: 194738294

Following gene: 194737295

Centisome position: 44.77

GC content: 62.46

Gene sequence:

>1356_bases
ATGAGTACCGCCGTCAACGTCGTTGAAATGTCTTATAGCGCTGATGAAATTCGCGAGCGCGTCCGCGCAGCGGGCGTTGT
CGGCGCGGGCGGCGCAGGTTTTCCCGCTCACGTCAAACTACAGGCGCAGGTAGAGATTTTTCTGGTGAACGCCGCCGAGT
GTGAACCGATGCTCAAAGTTGACCAGCAACTGATGTGGCAGCAGGCCGCGCGTCTTGTTCGCGGCGTGCAGTACGCGATG
ACGGCAACCGGCGCGCGCGAAGGGGTGATAGCCCTGAAAGAAAAATACCGCCGGGCCATCGACGCGCTCACCCCGCAGCT
GCCAGCCGGTATCCGCCTGCATATCCTGCCGGATGTTTATCCTGCGGGCGATGAGGTGCTGACTATCTGGATGGCAACCG
GCCGCCGGGTCGCCCCGGCTGCGCTACCGGCCAGCGTCGGCGTGGTCGTCAATAACGTGCAAACGGTGCTGAATATTGCC
CGGGCGGTCGAGCAGCAGTTTCCGGTCACTCGTCGCACGTTGACCGTAAACGGCGCGGTCGCCAGACCGTTGACCGTTAC
CGTTCCTGTCGGCATGTCACTGCATGAAGTGCTGGCGCTGGCGGGCGGCGCAACGGTCGACGACCCTGGTTTTATTAACG
GCGGCCCGATGATGGGTGGCCTGATTACCTCTCTTGATAACCCGGTGACGAAAACTACCGGCGGCCTGCTGGTGCTCCCC
AAAAGCCATCCGCTTATCCAGCGGAGAATGCAGGACGAGCGCACGGTGCTTTCCGTCGCGCGCACCGTCTGCGAGCAGTG
CCGACTGTGTACCGATCTCTGCCCACGGCATCTGATCGGCCACGAACTCTCCCCGCACCTGCTGGTGCGGGCGTTGAACT
TTCACCAGGCCGCCACGCCGCAGCTGCTGCTGAGCGCCCTTACCTGCTCGGAATGCAACGTTTGCGAAAGCGTGGCCTGC
CCGGTGGGGATCTCGCCGATGCGCATCAACCGCATGTTAAAACGCGAGCTGCGGGCGCAAAACCAGCGCTACGTAGGGCC
GCTGAACCCGGCCGACGAGATGGCGAAATATCGCCTGGTGCCGGTGAAGCGGCTGATCGCCAAACTGGGACTAAGTCCCT
GGTACCAGGAGGCACCGCTGGTGGAAGAAGAGCCGTCAGTAGAAAAAGTCACTTTGCAGCTGCGCCAGCATATTGGTGCC
AGCGCAGTACCGACTGTTGCCGTCGGCGAGCGCGTGACGCGCGGACAGTGCGTTGCCGATGTCCCGCCTGGCGCGCTCGG
CACCCCCATTCACGCCAGCATCGACGGCATTGTTTCGGCCATCAGCGAACAGGCCATCACGGTTGTAAGAGGTTAA

Upstream 100 bases:

>100_bases
TTCCGGCGATGGTGCAGGCTGCGCTGGCTGACGTTACGCTGCGCACTAACCCGCGCCCGGCCAATGCCGAGGAAATTCGT
GAACTGCTGGAGGAACTGCT

Downstream 100 bases:

>100_bases
CCATGTCTCAGGCTATAGGAATTTTAGAACTCACCAGCATCGCCAAAGGGATGGAACTCGGCGATGCGATGCTGAAAAGC
GCCAACGTTAATCTGCTGGT

Product: polyhedral body protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 451; Mature: 450

Protein sequence:

>451_residues
MSTAVNVVEMSYSADEIRERVRAAGVVGAGGAGFPAHVKLQAQVEIFLVNAAECEPMLKVDQQLMWQQAARLVRGVQYAM
TATGAREGVIALKEKYRRAIDALTPQLPAGIRLHILPDVYPAGDEVLTIWMATGRRVAPAALPASVGVVVNNVQTVLNIA
RAVEQQFPVTRRTLTVNGAVARPLTVTVPVGMSLHEVLALAGGATVDDPGFINGGPMMGGLITSLDNPVTKTTGGLLVLP
KSHPLIQRRMQDERTVLSVARTVCEQCRLCTDLCPRHLIGHELSPHLLVRALNFHQAATPQLLLSALTCSECNVCESVAC
PVGISPMRINRMLKRELRAQNQRYVGPLNPADEMAKYRLVPVKRLIAKLGLSPWYQEAPLVEEEPSVEKVTLQLRQHIGA
SAVPTVAVGERVTRGQCVADVPPGALGTPIHASIDGIVSAISEQAITVVRG

Sequences:

>Translated_451_residues
MSTAVNVVEMSYSADEIRERVRAAGVVGAGGAGFPAHVKLQAQVEIFLVNAAECEPMLKVDQQLMWQQAARLVRGVQYAM
TATGAREGVIALKEKYRRAIDALTPQLPAGIRLHILPDVYPAGDEVLTIWMATGRRVAPAALPASVGVVVNNVQTVLNIA
RAVEQQFPVTRRTLTVNGAVARPLTVTVPVGMSLHEVLALAGGATVDDPGFINGGPMMGGLITSLDNPVTKTTGGLLVLP
KSHPLIQRRMQDERTVLSVARTVCEQCRLCTDLCPRHLIGHELSPHLLVRALNFHQAATPQLLLSALTCSECNVCESVAC
PVGISPMRINRMLKRELRAQNQRYVGPLNPADEMAKYRLVPVKRLIAKLGLSPWYQEAPLVEEEPSVEKVTLQLRQHIGA
SAVPTVAVGERVTRGQCVADVPPGALGTPIHASIDGIVSAISEQAITVVRG
>Mature_450_residues
STAVNVVEMSYSADEIRERVRAAGVVGAGGAGFPAHVKLQAQVEIFLVNAAECEPMLKVDQQLMWQQAARLVRGVQYAMT
ATGAREGVIALKEKYRRAIDALTPQLPAGIRLHILPDVYPAGDEVLTIWMATGRRVAPAALPASVGVVVNNVQTVLNIAR
AVEQQFPVTRRTLTVNGAVARPLTVTVPVGMSLHEVLALAGGATVDDPGFINGGPMMGGLITSLDNPVTKTTGGLLVLPK
SHPLIQRRMQDERTVLSVARTVCEQCRLCTDLCPRHLIGHELSPHLLVRALNFHQAATPQLLLSALTCSECNVCESVACP
VGISPMRINRMLKRELRAQNQRYVGPLNPADEMAKYRLVPVKRLIAKLGLSPWYQEAPLVEEEPSVEKVTLQLRQHIGAS
AVPTVAVGERVTRGQCVADVPPGALGTPIHASIDGIVSAISEQAITVVRG

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=335, Percent_Identity=33.134328358209, Blast_Score=150, Evalue=1e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554 [H]

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 48389; Mature: 48258

Theoretical pI: Translated: 8.56; Mature: 8.56

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTAVNVVEMSYSADEIRERVRAAGVVGAGGAGFPAHVKLQAQVEIFLVNAAECEPMLKV
CCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEEEEECCCCCHHHHH
DQQLMWQQAARLVRGVQYAMTATGAREGVIALKEKYRRAIDALTPQLPAGIRLHILPDVY
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCC
PAGDEVLTIWMATGRRVAPAALPASVGVVVNNVQTVLNIARAVEQQFPVTRRTLTVNGAV
CCCCCEEEEEECCCCEECCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
ARPLTVTVPVGMSLHEVLALAGGATVDDPGFINGGPMMGGLITSLDNPVTKTTGGLLVLP
CCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEC
KSHPLIQRRMQDERTVLSVARTVCEQCRLCTDLCPRHLIGHELSPHLLVRALNFHQAATP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCH
QLLLSALTCSECNVCESVACPVGISPMRINRMLKRELRAQNQRYVGPLNPADEMAKYRLV
HHHHHHHHCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
PVKRLIAKLGLSPWYQEAPLVEEEPSVEKVTLQLRQHIGASAVPTVAVGERVTRGQCVAD
HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCEEEC
VPPGALGTPIHASIDGIVSAISEQAITVVRG
CCCCCCCCCCHHHHHHHHHHHHHHHEEEECC
>Mature Secondary Structure 
STAVNVVEMSYSADEIRERVRAAGVVGAGGAGFPAHVKLQAQVEIFLVNAAECEPMLKV
CCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEEEEECCCCCHHHHH
DQQLMWQQAARLVRGVQYAMTATGAREGVIALKEKYRRAIDALTPQLPAGIRLHILPDVY
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCC
PAGDEVLTIWMATGRRVAPAALPASVGVVVNNVQTVLNIARAVEQQFPVTRRTLTVNGAV
CCCCCEEEEEECCCCEECCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
ARPLTVTVPVGMSLHEVLALAGGATVDDPGFINGGPMMGGLITSLDNPVTKTTGGLLVLP
CCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEC
KSHPLIQRRMQDERTVLSVARTVCEQCRLCTDLCPRHLIGHELSPHLLVRALNFHQAATP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCH
QLLLSALTCSECNVCESVACPVGISPMRINRMLKRELRAQNQRYVGPLNPADEMAKYRLV
HHHHHHHHCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
PVKRLIAKLGLSPWYQEAPLVEEEPSVEKVTLQLRQHIGASAVPTVAVGERVTRGQCVAD
HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCEEEC
VPPGALGTPIHASIDGIVSAISEQAITVVRG
CCCCCCCCCCHHHHHHHHHHHHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA