| Definition | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 chromosome, complete genome. |
|---|---|
| Accession | NC_011094 |
| Length | 4,709,075 |
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The map label for this gene is lpfC [H]
Identifier: 194737814
GI number: 194737814
Start: 4701155
End: 4703584
Strand: Reverse
Name: lpfC [H]
Synonym: SeSA_A4844
Alternate gene names: 194737814
Gene position: 4703584-4701155 (Counterclockwise)
Preceding gene: 194733946
Following gene: 194735248
Centisome position: 99.88
GC content: 47.33
Gene sequence:
>2430_bases TTGGAAAATGATGAACCGGGCGTGGAGAATGTCGATCTATCGGTTTTCGAAAAGGGGGGGCAGGCAGAAGGCACCTATAA CGTTGATATTTATATTAATAACACCAATGTTGAAACAAAAAATATTGCCTTTAAAAATAAAAAATCAGCAGATAATAAGC TCTCCCTACAGCCGTGTCTTAGCGTTGAACAACTCAAGCAGTGGGGCGTAAAAACAGAAAACTTCCCCGAGCTTCAAAAT GACCCAAACGGGTGTACCGATCTTAGTCTGCTGGCTGGCGCTGTAGCAAAGTTTAATGTCATCGGTAACCGGCTGGATTT AGCGATCCCTCAAATCGCGTTGATCGCCGACCCGCGAGAATTCGTCCCTACCAGCGAATGGGATGAAGGCATTAATGCTT TTTTGCTGAATTACAGTTTTACCGGATCGCAGGATCACGATATTGATGAAAACCGGACGGAAAATAGCGAATACGCTAAC CTGCGCCCAGGTATTAACATTGGCGCATGGCGTTTTCGTAACTACTCAACCTGGAATCATGATAGCGATGGGCAAAATAG CTGGGATTCTGCCTACACCTATGTTTCTCGCGATATCGAATTTTTAAAAGGACAGCTGATCGCTGGGGAAAATAACACGC CAGCGGACGTCTTTGACAGTATTTCATTTAAGGGCGTACAGATCTCTTCTGATGACGATATGTTGCCGGACAGTATGAAA GGGTTCGCCCCGGTCATTCGCGGGGTGGCCAAAAGCAGCGCGCAGGTAACCGTTGAACAAAACGGTTATACCATCTACAA AACTAACGTTCCGGCGGGTCCATTCGCCATTAATGATCTTTATCCAACCGGCGGTTCGGGCGACCTGTACGTCACCATCA AAGAATCCGATGGTTCTGAACAGCATTTCATTGTGCCCTACGCCAGCGTTCCGGTATTACAGCGTGAAGGCCACCTGAAA TACGACCTGACGGTAGGCCGCACGCGTTCATCAGATACGCATTCCGCGCAACAGAATTTCGCAGAACTGACGGCCTTATA CGGATTAGCAGGCGGCATAACCGCCTATGGCGGAATAGAGAGTACGCTGAGCAATGATATTTATCATGCGGCGCTCATCG GGACAGGCTTAAACCTTGGCGATCTGGGCGCATTGTCTTTAGACGTCACCAATTCATGGTCAAAAATTAAAGCAGGCGAT GTGGTTAGCGATACGCTTACCGGACAGTCCTGGCGTATTCGTTACAGCAAAGATATTCAGTCAACAGGCACCAATTTCAC TGTCGCTGGCTACCGTTATTCGACCAAAGATTACTACGCTCTTGAGGATGTGCTGGATACCTATAGCGATAATAGTCACT ATGATCATGTACGTAATCGCACCGACCTGTCGTTATCGCAAGACATTATCTACGGTTCCATTTCACTCACTTTATATAAT GAAGATTACTGGAATGACACTCATACCACATCATTAGGTATTGGCTATAACAACACATGGCATAACGTAAGCTATGGCAT TAACTATTCTTATACGCTGAACGCCGATAATTCTCAGGATGAAGACGACGATACGGAAGACAGTAATGACCAGCAAATTT CAATCAATATTAGTATTCCGTTAGATGCCTTTATGCCGTCAACGTATGCCACCTACAATATGAACTCCGCGAAAGACGGC GATACCACGCACACTGTCGGTTTAAACGGAACAGCGCTGGCACAGAAAAATCTCTCATGGAGCGTTCAGGAAGGTTATTC CTCTCAAGAGAAAGCCACCAGCGGTAATGTGAGCGCAACCTATAACGGGACGTATGCGGATATTAACGGCGGGTATAGCT ACGATAATCATATGCGTCGCCTGAATTATGGCGTTCAGGGCGGCGTACTACTACATCGAAATGGCCTGACACTATCCCAG CCAATGGACGACACCATCATATTGGTTAAAGCCCCTGGCGCAGCGGGTGTCCCCGTGAATAACGAAACGGGCGTGGACAC CGATTTTCGGGGCTATGCCGTCGTACCTTATGCTTCGCCTTACCATCGTAATGAAGTGTCTTTAGATACGACTGGCATTA GAAAAAATATTGAGCTCATTGATACCAGTAAAACGCTGGTGCCTACCCGTGGCGCGGTGGTCAGGGCTGAATATAAAACC AATATTGGTTACAAGGCATTGATGGTATTAACCCGCATAAACAATCTGCCTGTTCCTTTTGGCGCGACCGTCTCGTCTTT AACAAAACCAGACAATCACAGCAGTTTTGTTGGTGATGCGGGGCAGGCCTGGTTAACCGGACTGGAAAAACAAGGGCGGT TATTAGTGAAGTGGGGACCAACAGCAGCAGACCGGTGTCAGGTCTCTTATCGTATACCGAGCTCCCCCTCCGCTTCTGGC GTAGAAATCTTACACGAGCAATGCCAGTGA
Upstream 100 bases:
>100_bases CTCCAGAGTAGAGCCCCGTTCTCAATTAGCGTTATCGTTTCTCTTTATATGCTGTTCCATAAAACCAGCGTTAGCGCATG ATCATTTTAATCCATTATCG
Downstream 100 bases:
>100_bases TTCTGGTGGGATAAAAGATGAATATGAACAGATTTGCTGCATTAGCCGCCCTGTTAACGTTCACGGGTCTGGCATTATGG TCGCCCTCGATCAGCGCGGC
Product: outer membrane usher protein SfmD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 809; Mature: 809
Protein sequence:
>809_residues MENDEPGVENVDLSVFEKGGQAEGTYNVDIYINNTNVETKNIAFKNKKSADNKLSLQPCLSVEQLKQWGVKTENFPELQN DPNGCTDLSLLAGAVAKFNVIGNRLDLAIPQIALIADPREFVPTSEWDEGINAFLLNYSFTGSQDHDIDENRTENSEYAN LRPGINIGAWRFRNYSTWNHDSDGQNSWDSAYTYVSRDIEFLKGQLIAGENNTPADVFDSISFKGVQISSDDDMLPDSMK GFAPVIRGVAKSSAQVTVEQNGYTIYKTNVPAGPFAINDLYPTGGSGDLYVTIKESDGSEQHFIVPYASVPVLQREGHLK YDLTVGRTRSSDTHSAQQNFAELTALYGLAGGITAYGGIESTLSNDIYHAALIGTGLNLGDLGALSLDVTNSWSKIKAGD VVSDTLTGQSWRIRYSKDIQSTGTNFTVAGYRYSTKDYYALEDVLDTYSDNSHYDHVRNRTDLSLSQDIIYGSISLTLYN EDYWNDTHTTSLGIGYNNTWHNVSYGINYSYTLNADNSQDEDDDTEDSNDQQISINISIPLDAFMPSTYATYNMNSAKDG DTTHTVGLNGTALAQKNLSWSVQEGYSSQEKATSGNVSATYNGTYADINGGYSYDNHMRRLNYGVQGGVLLHRNGLTLSQ PMDDTIILVKAPGAAGVPVNNETGVDTDFRGYAVVPYASPYHRNEVSLDTTGIRKNIELIDTSKTLVPTRGAVVRAEYKT NIGYKALMVLTRINNLPVPFGATVSSLTKPDNHSSFVGDAGQAWLTGLEKQGRLLVKWGPTAADRCQVSYRIPSSPSASG VEILHEQCQ
Sequences:
>Translated_809_residues MENDEPGVENVDLSVFEKGGQAEGTYNVDIYINNTNVETKNIAFKNKKSADNKLSLQPCLSVEQLKQWGVKTENFPELQN DPNGCTDLSLLAGAVAKFNVIGNRLDLAIPQIALIADPREFVPTSEWDEGINAFLLNYSFTGSQDHDIDENRTENSEYAN LRPGINIGAWRFRNYSTWNHDSDGQNSWDSAYTYVSRDIEFLKGQLIAGENNTPADVFDSISFKGVQISSDDDMLPDSMK GFAPVIRGVAKSSAQVTVEQNGYTIYKTNVPAGPFAINDLYPTGGSGDLYVTIKESDGSEQHFIVPYASVPVLQREGHLK YDLTVGRTRSSDTHSAQQNFAELTALYGLAGGITAYGGIESTLSNDIYHAALIGTGLNLGDLGALSLDVTNSWSKIKAGD VVSDTLTGQSWRIRYSKDIQSTGTNFTVAGYRYSTKDYYALEDVLDTYSDNSHYDHVRNRTDLSLSQDIIYGSISLTLYN EDYWNDTHTTSLGIGYNNTWHNVSYGINYSYTLNADNSQDEDDDTEDSNDQQISINISIPLDAFMPSTYATYNMNSAKDG DTTHTVGLNGTALAQKNLSWSVQEGYSSQEKATSGNVSATYNGTYADINGGYSYDNHMRRLNYGVQGGVLLHRNGLTLSQ PMDDTIILVKAPGAAGVPVNNETGVDTDFRGYAVVPYASPYHRNEVSLDTTGIRKNIELIDTSKTLVPTRGAVVRAEYKT NIGYKALMVLTRINNLPVPFGATVSSLTKPDNHSSFVGDAGQAWLTGLEKQGRLLVKWGPTAADRCQVSYRIPSSPSASG VEILHEQCQ >Mature_809_residues MENDEPGVENVDLSVFEKGGQAEGTYNVDIYINNTNVETKNIAFKNKKSADNKLSLQPCLSVEQLKQWGVKTENFPELQN DPNGCTDLSLLAGAVAKFNVIGNRLDLAIPQIALIADPREFVPTSEWDEGINAFLLNYSFTGSQDHDIDENRTENSEYAN LRPGINIGAWRFRNYSTWNHDSDGQNSWDSAYTYVSRDIEFLKGQLIAGENNTPADVFDSISFKGVQISSDDDMLPDSMK GFAPVIRGVAKSSAQVTVEQNGYTIYKTNVPAGPFAINDLYPTGGSGDLYVTIKESDGSEQHFIVPYASVPVLQREGHLK YDLTVGRTRSSDTHSAQQNFAELTALYGLAGGITAYGGIESTLSNDIYHAALIGTGLNLGDLGALSLDVTNSWSKIKAGD VVSDTLTGQSWRIRYSKDIQSTGTNFTVAGYRYSTKDYYALEDVLDTYSDNSHYDHVRNRTDLSLSQDIIYGSISLTLYN EDYWNDTHTTSLGIGYNNTWHNVSYGINYSYTLNADNSQDEDDDTEDSNDQQISINISIPLDAFMPSTYATYNMNSAKDG DTTHTVGLNGTALAQKNLSWSVQEGYSSQEKATSGNVSATYNGTYADINGGYSYDNHMRRLNYGVQGGVLLHRNGLTLSQ PMDDTIILVKAPGAAGVPVNNETGVDTDFRGYAVVPYASPYHRNEVSLDTTGIRKNIELIDTSKTLVPTRGAVVRAEYKT NIGYKALMVLTRINNLPVPFGATVSSLTKPDNHSSFVGDAGQAWLTGLEKQGRLLVKWGPTAADRCQVSYRIPSSPSASG VEILHEQCQ
Specific function: Involved in the export and assembly of lpfA fimbrial subunits across the outer membrane [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fimbrial export usher family [H]
Homologues:
Organism=Escherichia coli, GI1790772, Length=845, Percent_Identity=39.8816568047337, Blast_Score=570, Evalue=1e-164, Organism=Escherichia coli, GI1789533, Length=820, Percent_Identity=39.390243902439, Blast_Score=557, Evalue=1e-159, Organism=Escherichia coli, GI1787172, Length=843, Percent_Identity=37.841043890866, Blast_Score=556, Evalue=1e-159, Organism=Escherichia coli, GI1786744, Length=843, Percent_Identity=37.6037959667853, Blast_Score=549, Evalue=1e-157, Organism=Escherichia coli, GI1786332, Length=815, Percent_Identity=33.3742331288344, Blast_Score=392, Evalue=1e-110, Organism=Escherichia coli, GI1788427, Length=765, Percent_Identity=30.4575163398693, Blast_Score=323, Evalue=3e-89, Organism=Escherichia coli, GI87081778, Length=807, Percent_Identity=28.3767038413879, Blast_Score=263, Evalue=2e-71, Organism=Escherichia coli, GI1789610, Length=762, Percent_Identity=24.9343832020997, Blast_Score=159, Evalue=8e-40,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000015 - InterPro: IPR018030 [H]
Pfam domain/function: PF00577 Usher [H]
EC number: NA
Molecular weight: Translated: 88655; Mature: 88655
Theoretical pI: Translated: 4.47; Mature: 4.47
Prosite motif: PS01151 FIMBRIAL_USHER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MENDEPGVENVDLSVFEKGGQAEGTYNVDIYINNTNVETKNIAFKNKKSADNKLSLQPCL CCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEECCCCEECEEEECCCCCCCCCEECCCCC SVEQLKQWGVKTENFPELQNDPNGCTDLSLLAGAVAKFNVIGNRLDLAIPQIALIADPRE CHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEEEECCEEEEECCEEEEEECCHH FVPTSEWDEGINAFLLNYSFTGSQDHDIDENRTENSEYANLRPGINIGAWRFRNYSTWNH HCCCCCHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC DSDGQNSWDSAYTYVSRDIEFLKGQLIAGENNTPADVFDSISFKGVQISSDDDMLPDSMK CCCCCCCCHHHHHHHHHCHHHHCCEEEECCCCCCHHHHHCCCCCEEEECCCCCCCCHHHH GFAPVIRGVAKSSAQVTVEQNGYTIYKTNVPAGPFAINDLYPTGGSGDLYVTIKESDGSE HHHHHHHHHHCCCCEEEEECCCEEEEEECCCCCCEEEECCCCCCCCCCEEEEEECCCCCC QHFIVPYASVPVLQREGHLKYDLTVGRTRSSDTHSAQQNFAELTALYGLAGGITAYGGIE CEEEEEECCCCEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCEEECCCCH STLSNDIYHAALIGTGLNLGDLGALSLDVTNSWSKIKAGDVVSDTLTGQSWRIRYSKDIQ HHHHCCCEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCHHCCCCCEEEEEECCCHH STGTNFTVAGYRYSTKDYYALEDVLDTYSDNSHYDHVRNRTDLSLSQDIIYGSISLTLYN CCCCCEEEEEEEECCCCHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCEEEEEEEEEEEC EDYWNDTHTTSLGIGYNNTWHNVSYGINYSYTLNADNSQDEDDDTEDSNDQQISINISIP CCCCCCCCCEEEECCCCCCCCCEEECEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEC LDAFMPSTYATYNMNSAKDGDTTHTVGLNGTALAQKNLSWSVQEGYSSQEKATSGNVSAT HHHHCCCCEEEEECCCCCCCCCEEEECCCCCEEEECCCCEEHHCCCCCHHHCCCCCEEEE YNGTYADINGGYSYDNHMRRLNYGVQGGVLLHRNGLTLSQPMDDTIILVKAPGAAGVPVN ECCEEEECCCCCCHHHHHHHHCCCCCCCEEEEECCCEECCCCCCEEEEEECCCCCCCCCC NETGVDTDFRGYAVVPYASPYHRNEVSLDTTGIRKNIELIDTSKTLVPTRGAVVRAEYKT CCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCEEEEECCCEEECCCCCEEEEEECC NIGYKALMVLTRINNLPVPFGATVSSLTKPDNHSSFVGDAGQAWLTGLEKQGRLLVKWGP CCCHHHHEEEHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCEEEEECC TAADRCQVSYRIPSSPSASGVEILHEQCQ CCCCCEEEEEECCCCCCCCHHHHHHHHCC >Mature Secondary Structure MENDEPGVENVDLSVFEKGGQAEGTYNVDIYINNTNVETKNIAFKNKKSADNKLSLQPCL CCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEECCCCEECEEEECCCCCCCCCEECCCCC SVEQLKQWGVKTENFPELQNDPNGCTDLSLLAGAVAKFNVIGNRLDLAIPQIALIADPRE CHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEEEECCEEEEECCEEEEEECCHH FVPTSEWDEGINAFLLNYSFTGSQDHDIDENRTENSEYANLRPGINIGAWRFRNYSTWNH HCCCCCHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC DSDGQNSWDSAYTYVSRDIEFLKGQLIAGENNTPADVFDSISFKGVQISSDDDMLPDSMK CCCCCCCCHHHHHHHHHCHHHHCCEEEECCCCCCHHHHHCCCCCEEEECCCCCCCCHHHH GFAPVIRGVAKSSAQVTVEQNGYTIYKTNVPAGPFAINDLYPTGGSGDLYVTIKESDGSE HHHHHHHHHHCCCCEEEEECCCEEEEEECCCCCCEEEECCCCCCCCCCEEEEEECCCCCC QHFIVPYASVPVLQREGHLKYDLTVGRTRSSDTHSAQQNFAELTALYGLAGGITAYGGIE CEEEEEECCCCEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCEEECCCCH STLSNDIYHAALIGTGLNLGDLGALSLDVTNSWSKIKAGDVVSDTLTGQSWRIRYSKDIQ HHHHCCCEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCHHCCCCCEEEEEECCCHH STGTNFTVAGYRYSTKDYYALEDVLDTYSDNSHYDHVRNRTDLSLSQDIIYGSISLTLYN CCCCCEEEEEEEECCCCHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCEEEEEEEEEEEC EDYWNDTHTTSLGIGYNNTWHNVSYGINYSYTLNADNSQDEDDDTEDSNDQQISINISIP CCCCCCCCCEEEECCCCCCCCCEEECEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEC LDAFMPSTYATYNMNSAKDGDTTHTVGLNGTALAQKNLSWSVQEGYSSQEKATSGNVSAT HHHHCCCCEEEEECCCCCCCCCEEEECCCCCEEEECCCCEEHHCCCCCHHHCCCCCEEEE YNGTYADINGGYSYDNHMRRLNYGVQGGVLLHRNGLTLSQPMDDTIILVKAPGAAGVPVN ECCEEEECCCCCCHHHHHHHHCCCCCCCEEEEECCCEECCCCCCEEEEEECCCCCCCCCC NETGVDTDFRGYAVVPYASPYHRNEVSLDTTGIRKNIELIDTSKTLVPTRGAVVRAEYKT CCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCEEEEECCCEEECCCCCEEEEEECC NIGYKALMVLTRINNLPVPFGATVSSLTKPDNHSSFVGDAGQAWLTGLEKQGRLLVKWGP CCCHHHHEEEHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCEEEEECC TAADRCQVSYRIPSSPSASGVEILHEQCQ CCCCCEEEEEECCCCCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7721701; 11677609 [H]