| Definition | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 chromosome, complete genome. |
|---|---|
| Accession | NC_011094 |
| Length | 4,709,075 |
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The map label for this gene is lpfC [H]
Identifier: 194737765
GI number: 194737765
Start: 1242158
End: 1244713
Strand: Reverse
Name: lpfC [H]
Synonym: SeSA_A1271
Alternate gene names: 194737765
Gene position: 1244713-1242158 (Counterclockwise)
Preceding gene: 194737410
Following gene: 194737274
Centisome position: 26.43
GC content: 54.62
Gene sequence:
>2556_bases ATGAATGCAGACGCATACAAAAAAATAATGACGCTCAGTCGAATCGCCTGCTTTATCGCCCTGCAGTGCGCACTGCCAGC CGGTAACACTGCGTTTGCCCGCGAATATTTTAACCCAGCGCTGCTGGGGATCGACGGGCCGGGAAAAGAGCTTACCGATC TTTCCGCTTTTGAAGAAGGCATCGGCCAAATGCCTGGCACCTATCGCGTTGACGTCATTGTGAATAAATCGTCCGCTGGC GTGCATGACGTTAATTTTGTTATGCAAAAAGATACGGCAGGCAACACCACTCTGCAGCCCTGCTTCAGCGTTGACTCGCT GCGCGAGTTCGGTATTCGTACCGACGCGTTTCCAAATCTTGCTGGTCACGGCGACTGCGCTAACCTGGCGGCGATCCCGC AGGCCAGCGCCGAGTTCGCCTTTGAACGCCAGCAGCTACGGCTGTCTATTCCGCAGGCCGCCGTAGACAGCCATGCCCGC GGCTACGTCGCCCCGGAACGGCTCGATGAGGGCATTAACGCCCTGCTGCTCAACTATAGCTTTTCCGGCGCCAACACCGA AGCGCGCCGCGGCGATATGACCGACTCCGACAGCTATTATCTGAGCCTGCGTCCGGGCCTGAATATTGGCCCCTGGCGCA TTCGCAACTACAGCACCTGGAATCGCAACGTCAACGGCGATAGCGCCGATGAAAGCTGGGATTCGCTCTACACCTACGCC CAACGCAATATTATCGCGCTGAAAAGTCAGCTAACATTCGGCGACAGCACCGCGCCCTCCGAGCTGTTTGATAGTGTGCC GTTCCGCGGCGCACAGCTGGCCTCCGACGATGATATGTTGCCCGATAGCCTGCGTGGCTACGCGCCGGTGGTGCGCGGCA TCGCCCGTACTAACGCGCAGGTAATTATCAAACAGAATGGTTACACCATTTATCAAAGCTATGTTTCGCCGGGCGCATTT GAGATTACCGATATGTACCCAACCGGCAGCAGCGGCGATCTTGACGTCACAATTAAAGAGGCCGACGGTAGCGAACAGCA TCAGACGGTGGCCTTCGCCTCTCTGCCTATTCTGCAGCGCGAAGGGCGGCTGAAGTACAGCGTGACCAGCGGCCAGTATC GCCCCTATGAGAGCGATATTGACAAAAAAATGTTTACCCAGGCCACCCTGATTTATGGCCTGCCAGCCGGGTTTACGGTA TATGGCGGGGGCCAGTTCTCACAGCACTACAAGTCCCTGCTCACCGGGCTTGGAAAAAACCTCGGCGAGTTGGGTGCCGT CTCGGTGGATGGCACTCAGGCATGGTCAACGCAAAAAGATCAGGATAAAGAGAGCGGCCAGTCCTGGCGCATCCGTTACA GTAAAAATATTCTCGAAACCGGCACCAATATATCCATTTCCGGTTATAGGTATTCAACATCAGGTTATTACACTCTCCCG GAAGTACTGGATACCTGGCGTGACGACGAGTCGCAAAATAATAACGACCGCCGCCGCAACCGTGCTGAACTTCAGCTTAA CCAGAGTATCGGGGCGAGTCTGGGGTCACTGTCGCTCAATGCTATTAGCGAAGATTACTGGAACAGTGACCGGAAGATGC GCTCTCTCGGTGTGGGTTACAGTAATAGCTGGGGCGGCGTGACGTACAACATCAATTACAGCTATAACCGCAATACCACC GACAGTGACGATAGCGACAAAATCTACGATGAAGATCAGGTCTTCTCACTGAGCATAAACATCCCGCTCGACCGCTGGTT AAGTCACAGTTACGCCACCTACAACCTGAATACTAGCAAACGGGGCAATACCAACCATACCGTCGGGCTAAACGGGTCAG CATTAGAAGACAATAACCTGAACTGGAGTCTCCAGCAGAGCGAAACGAATCACGGCGAAGGGAATGGCGGTTACGCCAGC CTCGATTATCAGGGGGCCTACGCACGAATGAATGGTGCCTACAGCTATGACAACGACCAGAAACGCGTTAACTACGGCAT GGAAGGCGGCATTGTCGCGCACGCGCATGGTGTCACGCTCAGCCAGTCGTTGGGCGAAACCTCAGCACTGGTAGAAGCCC CCGGGGCGAATGGTGTTACGATAAGCAACCAGACGGGTGTAAAAACCGACTTCCGCGGTTACACCGTGGTGCCTTACGTA ACGCCGTACCGTGAAACCGCCGTCTCACTGGATACCGAAACGCTGCCTGATGGTGCTGACGTCGACCTGACCAGCCAGAT GATTACTCCCACGCGCGGCGCAATTGTACGCGCACATTTTGATACCCGTATCGGTAAAAGGGTACTCATGAATTTGTCAC GTACCCCTACGGAGATAGTGCCATTTGGAGCGCTGGCAACGATAGAGGGTCAACCTGCGGATAAGAGCTTCATCGTGGGT GACCACGGGCAAGTCTATCTTACCGGTGCGCCCGAACGCGGAACCTTAAAGGTAACGTGGGGCCGTACGGCGAATGACAC CTGTCACGTAACATTCAATTTAACAGAATTGAATGCGACTGATGGTGTGATGGAAACGCAAGAATCTTGTCGTTAA
Upstream 100 bases:
>100_bases AAGCCAGCGGCGACGTAACCTGGACACTTATTAACGATTTCGGCTCTATCGGGTCTGAACACCACACACGCCTGTAAGAC CACACCGAAAGGATATCGGG
Downstream 100 bases:
>100_bases TAACGATGACAATAATCGTCATAAGGAAAACGCATTCGTGAAAAAACCAGTCGGCCTTGCGTTGTTAATATCTGTGTGCC CGTTAATAACGTCCGTTGAT
Product: outer membrane usher protein SfmD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 851; Mature: 851
Protein sequence:
>851_residues MNADAYKKIMTLSRIACFIALQCALPAGNTAFAREYFNPALLGIDGPGKELTDLSAFEEGIGQMPGTYRVDVIVNKSSAG VHDVNFVMQKDTAGNTTLQPCFSVDSLREFGIRTDAFPNLAGHGDCANLAAIPQASAEFAFERQQLRLSIPQAAVDSHAR GYVAPERLDEGINALLLNYSFSGANTEARRGDMTDSDSYYLSLRPGLNIGPWRIRNYSTWNRNVNGDSADESWDSLYTYA QRNIIALKSQLTFGDSTAPSELFDSVPFRGAQLASDDDMLPDSLRGYAPVVRGIARTNAQVIIKQNGYTIYQSYVSPGAF EITDMYPTGSSGDLDVTIKEADGSEQHQTVAFASLPILQREGRLKYSVTSGQYRPYESDIDKKMFTQATLIYGLPAGFTV YGGGQFSQHYKSLLTGLGKNLGELGAVSVDGTQAWSTQKDQDKESGQSWRIRYSKNILETGTNISISGYRYSTSGYYTLP EVLDTWRDDESQNNNDRRRNRAELQLNQSIGASLGSLSLNAISEDYWNSDRKMRSLGVGYSNSWGGVTYNINYSYNRNTT DSDDSDKIYDEDQVFSLSINIPLDRWLSHSYATYNLNTSKRGNTNHTVGLNGSALEDNNLNWSLQQSETNHGEGNGGYAS LDYQGAYARMNGAYSYDNDQKRVNYGMEGGIVAHAHGVTLSQSLGETSALVEAPGANGVTISNQTGVKTDFRGYTVVPYV TPYRETAVSLDTETLPDGADVDLTSQMITPTRGAIVRAHFDTRIGKRVLMNLSRTPTEIVPFGALATIEGQPADKSFIVG DHGQVYLTGAPERGTLKVTWGRTANDTCHVTFNLTELNATDGVMETQESCR
Sequences:
>Translated_851_residues MNADAYKKIMTLSRIACFIALQCALPAGNTAFAREYFNPALLGIDGPGKELTDLSAFEEGIGQMPGTYRVDVIVNKSSAG VHDVNFVMQKDTAGNTTLQPCFSVDSLREFGIRTDAFPNLAGHGDCANLAAIPQASAEFAFERQQLRLSIPQAAVDSHAR GYVAPERLDEGINALLLNYSFSGANTEARRGDMTDSDSYYLSLRPGLNIGPWRIRNYSTWNRNVNGDSADESWDSLYTYA QRNIIALKSQLTFGDSTAPSELFDSVPFRGAQLASDDDMLPDSLRGYAPVVRGIARTNAQVIIKQNGYTIYQSYVSPGAF EITDMYPTGSSGDLDVTIKEADGSEQHQTVAFASLPILQREGRLKYSVTSGQYRPYESDIDKKMFTQATLIYGLPAGFTV YGGGQFSQHYKSLLTGLGKNLGELGAVSVDGTQAWSTQKDQDKESGQSWRIRYSKNILETGTNISISGYRYSTSGYYTLP EVLDTWRDDESQNNNDRRRNRAELQLNQSIGASLGSLSLNAISEDYWNSDRKMRSLGVGYSNSWGGVTYNINYSYNRNTT DSDDSDKIYDEDQVFSLSINIPLDRWLSHSYATYNLNTSKRGNTNHTVGLNGSALEDNNLNWSLQQSETNHGEGNGGYAS LDYQGAYARMNGAYSYDNDQKRVNYGMEGGIVAHAHGVTLSQSLGETSALVEAPGANGVTISNQTGVKTDFRGYTVVPYV TPYRETAVSLDTETLPDGADVDLTSQMITPTRGAIVRAHFDTRIGKRVLMNLSRTPTEIVPFGALATIEGQPADKSFIVG DHGQVYLTGAPERGTLKVTWGRTANDTCHVTFNLTELNATDGVMETQESCR >Mature_851_residues MNADAYKKIMTLSRIACFIALQCALPAGNTAFAREYFNPALLGIDGPGKELTDLSAFEEGIGQMPGTYRVDVIVNKSSAG VHDVNFVMQKDTAGNTTLQPCFSVDSLREFGIRTDAFPNLAGHGDCANLAAIPQASAEFAFERQQLRLSIPQAAVDSHAR GYVAPERLDEGINALLLNYSFSGANTEARRGDMTDSDSYYLSLRPGLNIGPWRIRNYSTWNRNVNGDSADESWDSLYTYA QRNIIALKSQLTFGDSTAPSELFDSVPFRGAQLASDDDMLPDSLRGYAPVVRGIARTNAQVIIKQNGYTIYQSYVSPGAF EITDMYPTGSSGDLDVTIKEADGSEQHQTVAFASLPILQREGRLKYSVTSGQYRPYESDIDKKMFTQATLIYGLPAGFTV YGGGQFSQHYKSLLTGLGKNLGELGAVSVDGTQAWSTQKDQDKESGQSWRIRYSKNILETGTNISISGYRYSTSGYYTLP EVLDTWRDDESQNNNDRRRNRAELQLNQSIGASLGSLSLNAISEDYWNSDRKMRSLGVGYSNSWGGVTYNINYSYNRNTT DSDDSDKIYDEDQVFSLSINIPLDRWLSHSYATYNLNTSKRGNTNHTVGLNGSALEDNNLNWSLQQSETNHGEGNGGYAS LDYQGAYARMNGAYSYDNDQKRVNYGMEGGIVAHAHGVTLSQSLGETSALVEAPGANGVTISNQTGVKTDFRGYTVVPYV TPYRETAVSLDTETLPDGADVDLTSQMITPTRGAIVRAHFDTRIGKRVLMNLSRTPTEIVPFGALATIEGQPADKSFIVG DHGQVYLTGAPERGTLKVTWGRTANDTCHVTFNLTELNATDGVMETQESCR
Specific function: Involved in the export and assembly of lpfA fimbrial subunits across the outer membrane [H]
COG id: COG3188
COG function: function code NU; P pilus assembly protein, porin PapC
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fimbrial export usher family [H]
Homologues:
Organism=Escherichia coli, GI1787172, Length=871, Percent_Identity=43.0539609644087, Blast_Score=683, Evalue=0.0, Organism=Escherichia coli, GI1790772, Length=870, Percent_Identity=41.6091954022989, Blast_Score=637, Evalue=0.0, Organism=Escherichia coli, GI1786744, Length=865, Percent_Identity=41.6184971098266, Blast_Score=636, Evalue=0.0, Organism=Escherichia coli, GI1789533, Length=831, Percent_Identity=42.4789410348977, Blast_Score=612, Evalue=1e-176, Organism=Escherichia coli, GI1786332, Length=862, Percent_Identity=32.7146171693735, Blast_Score=369, Evalue=1e-103, Organism=Escherichia coli, GI1788427, Length=791, Percent_Identity=29.456384323641, Blast_Score=322, Evalue=9e-89, Organism=Escherichia coli, GI87081778, Length=826, Percent_Identity=30.1452784503632, Blast_Score=277, Evalue=2e-75, Organism=Escherichia coli, GI1789610, Length=800, Percent_Identity=24.875, Blast_Score=146, Evalue=7e-36,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000015 - InterPro: IPR018030 [H]
Pfam domain/function: PF00577 Usher [H]
EC number: NA
Molecular weight: Translated: 93273; Mature: 93273
Theoretical pI: Translated: 4.80; Mature: 4.80
Prosite motif: PS01151 FIMBRIAL_USHER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNADAYKKIMTLSRIACFIALQCALPAGNTAFAREYFNPALLGIDGPGKELTDLSAFEEG CCHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHCCCEEEECCCCCCHHHHHHHHHHH IGQMPGTYRVDVIVNKSSAGVHDVNFVMQKDTAGNTTLQPCFSVDSLREFGIRTDAFPNL HHCCCCCEEEEEEEECCCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCC AGHGDCANLAAIPQASAEFAFERQQLRLSIPQAAVDSHARGYVAPERLDEGINALLLNYS CCCCCCCCCEECCCCHHHHHHHHHHHEEECCHHHHCCCCCCCCCHHHHHCCCEEEEEEEE FSGANTEARRGDMTDSDSYYLSLRPGLNIGPWRIRNYSTWNRNVNGDSADESWDSLYTYA ECCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHH QRNIIALKSQLTFGDSTAPSELFDSVPFRGAQLASDDDMLPDSLRGYAPVVRGIARTNAQ HCCEEEEEEEECCCCCCCHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCEE VIIKQNGYTIYQSYVSPGAFEITDMYPTGSSGDLDVTIKEADGSEQHQTVAFASLPILQR EEEEECCEEEEEECCCCCCEEEEEECCCCCCCCEEEEEECCCCCCCCEEEEEEECCEEEC EGRLKYSVTSGQYRPYESDIDKKMFTQATLIYGLPAGFTVYGGGQFSQHYKSLLTGLGKN CCCEEEEEECCCCCCCHHHHHHHHHHHEEEEEECCCCEEEECCCHHHHHHHHHHHHHCCC LGELGAVSVDGTQAWSTQKDQDKESGQSWRIRYSKNILETGTNISISGYRYSTSGYYTLP HHHHCEEEECCCCCCCCCCCCCHHCCCEEEEEEECHHHHCCCCEEEEEEEEECCCCEECH EVLDTWRDDESQNNNDRRRNRAELQLNQSIGASLGSLSLNAISEDYWNSDRKMRSLGVGY HHHHHHCCCCCCCCCHHHHCHHHEEECHHHCCCCCCEEHHHHHHHHHCCCHHHHHHCCCC SNSWGGVTYNINYSYNRNTTDSDDSDKIYDEDQVFSLSINIPLDRWLSHSYATYNLNTSK CCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHCCCEEEEECCCCC RGNTNHTVGLNGSALEDNNLNWSLQQSETNHGEGNGGYASLDYQGAYARMNGAYSYDNDQ CCCCCCEEECCCCEECCCCCCEEEECCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCCC KRVNYGMEGGIVAHAHGVTLSQSLGETSALVEAPGANGVTISNQTGVKTDFRGYTVVPYV HHEECCCCCCEEEEECCCEEHHHCCCCHHEEECCCCCCEEECCCCCCCCCCCCEEEEEEE TPYRETAVSLDTETLPDGADVDLTSQMITPTRGAIVRAHFDTRIGKRVLMNLSRTPTEIV CCCHHHEEECCCCCCCCCCCCCCHHHHCCCCCCEEEEEEHHHHHHHHHHHHCCCCCCCEE PFGALATIEGQPADKSFIVGDHGQVYLTGAPERGTLKVTWGRTANDTCHVTFNLTELNAT CCCEEEEECCCCCCCEEEEECCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEEEEECCC DGVMETQESCR CCHHHHHHHCC >Mature Secondary Structure MNADAYKKIMTLSRIACFIALQCALPAGNTAFAREYFNPALLGIDGPGKELTDLSAFEEG CCHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHCCCEEEECCCCCCHHHHHHHHHHH IGQMPGTYRVDVIVNKSSAGVHDVNFVMQKDTAGNTTLQPCFSVDSLREFGIRTDAFPNL HHCCCCCEEEEEEEECCCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCC AGHGDCANLAAIPQASAEFAFERQQLRLSIPQAAVDSHARGYVAPERLDEGINALLLNYS CCCCCCCCCEECCCCHHHHHHHHHHHEEECCHHHHCCCCCCCCCHHHHHCCCEEEEEEEE FSGANTEARRGDMTDSDSYYLSLRPGLNIGPWRIRNYSTWNRNVNGDSADESWDSLYTYA ECCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHH QRNIIALKSQLTFGDSTAPSELFDSVPFRGAQLASDDDMLPDSLRGYAPVVRGIARTNAQ HCCEEEEEEEECCCCCCCHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCEE VIIKQNGYTIYQSYVSPGAFEITDMYPTGSSGDLDVTIKEADGSEQHQTVAFASLPILQR EEEEECCEEEEEECCCCCCEEEEEECCCCCCCCEEEEEECCCCCCCCEEEEEEECCEEEC EGRLKYSVTSGQYRPYESDIDKKMFTQATLIYGLPAGFTVYGGGQFSQHYKSLLTGLGKN CCCEEEEEECCCCCCCHHHHHHHHHHHEEEEEECCCCEEEECCCHHHHHHHHHHHHHCCC LGELGAVSVDGTQAWSTQKDQDKESGQSWRIRYSKNILETGTNISISGYRYSTSGYYTLP HHHHCEEEECCCCCCCCCCCCCHHCCCEEEEEEECHHHHCCCCEEEEEEEEECCCCEECH EVLDTWRDDESQNNNDRRRNRAELQLNQSIGASLGSLSLNAISEDYWNSDRKMRSLGVGY HHHHHHCCCCCCCCCHHHHCHHHEEECHHHCCCCCCEEHHHHHHHHHCCCHHHHHHCCCC SNSWGGVTYNINYSYNRNTTDSDDSDKIYDEDQVFSLSINIPLDRWLSHSYATYNLNTSK CCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHCCCEEEEECCCCC RGNTNHTVGLNGSALEDNNLNWSLQQSETNHGEGNGGYASLDYQGAYARMNGAYSYDNDQ CCCCCCEEECCCCEECCCCCCEEEECCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCCC KRVNYGMEGGIVAHAHGVTLSQSLGETSALVEAPGANGVTISNQTGVKTDFRGYTVVPYV HHEECCCCCCEEEEECCCEEHHHCCCCHHEEECCCCCCEEECCCCCCCCCCCCEEEEEEE TPYRETAVSLDTETLPDGADVDLTSQMITPTRGAIVRAHFDTRIGKRVLMNLSRTPTEIV CCCHHHEEECCCCCCCCCCCCCCHHHHCCCCCCEEEEEEHHHHHHHHHHHHCCCCCCCEE PFGALATIEGQPADKSFIVGDHGQVYLTGAPERGTLKVTWGRTANDTCHVTFNLTELNAT CCCEEEEECCCCCCCEEEEECCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEEEEECCC DGVMETQESCR CCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7721701; 11677609 [H]