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The map label for this gene is ompS2 [H]

Identifier: 194737249

GI number: 194737249

Start: 1517129

End: 1518271

Strand: Reverse

Name: ompS2 [H]

Synonym: SeSA_A1572

Alternate gene names: 194737249

Gene position: 1518271-1517129 (Counterclockwise)

Preceding gene: 194736480

Following gene: 194737712

Centisome position: 32.24

GC content: 46.46

Gene sequence:

>1143_bases
ATGAAAAGAAAAGTATTGGCACTTGTCATCCCGGCTCTGCTGGCTGCTGGCGCGGCACACGCCGCTGAAGTCTATAACAA
AGACGGCAATAAGCTGGACCTTTACGGGAAAGTAGACGGCCTGCACTATTTCTCTGACAATAGTGGCTCTGACGGCGACC
AAACCTATGTTCGTTTCGGTTTTAAAGGCGAAACGCAGATTAACGACCAACTGACCGGTTACGGCCAGTGGGAATATAAC
GTTCAGGCTAACACTACCGAAGGCGAAGGCGCTAATTCCTGGACTCGTCTGGCATTCGCCGGCCTGAAATTCGGCGACTA
CGGCTCATTCGACTATGGTCGTAACTACGGCGTCCTGTACGACGTGGAAGGTTGGACCGATATGCTGCCTGAGTTCGGCG
GCGACTCCTATACTTACGCAGACAACTACATGACCGGTCGTGCTAACGGCGTGGCCACCTACCGTAACACTGATTTCTTC
GGTCTGGTAGACGGTCTGAGTTTTGCTCTACAATACCAGGGCAATAATGAAAATAGCGGTAACGGTAATGAAGGTACAAA
TAACCGTACTGATGATGACGATTTCCGTAGAGAAAACGGAGATGGTTTTGGTATTTCTACCACTTACGATTTTGGCATGG
GCTTTAGCGCAGGTGCTGCTTACACAACATCTGACCGTACAAACGATCAGGTTTCGCGTGGCGAACAGTATGCAAAAGGC
GATAAAGCAGATGCATGGACTGCTGGCTTGAAATATGATGCCAACAACATCTATTTAGCCACTATGTATTCTGAAACCCG
GAATATGACGCCATATGGCTCTTTGGATTCTTATGCTCATGGTGGTGTGGCTAATAAAACACAAAACTTTGAAGTTACTG
CGCAGTACCAATTTGATTTCGGTTTACGTCCGGCAGTTTCCTTCCTGATGTCTAAAGGTAAAGACCTTGTCAATAACGGC
GTAAATGATGACAAAGATTTGGTTAAATATGCTGATGTAGGTGCTACCTACTATTTCAACAAAAACTTCTCCACCTATGT
TGATTATAAAATCAACCTGCTGGATGACGACGATAACTTCTATGCAGATAACGGCATTAATACCGATGACGTTGTCGCGC
TGGGTATGGTTTACCAGTTCTAA

Upstream 100 bases:

>100_bases
TTTGCTGAAATAATATTATTCAGATTAGGATGCCTTTGATTCAACGAATCTGTAGAAGTTCAATCTTTTGCAAATAAGTT
AAGTTTTTAAGGATAAAAAA

Downstream 100 bases:

>100_bases
TTATTCATTAATTCTTCTCAAGCCTGCCGTTTCGGCGGGCTTTTCTTTTTTCATCACCACCGTTCTAAAAACAGAACGCA
CTGTTCCCTGGGCACAGATT

Product: outer membrane protein N

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 380; Mature: 380

Protein sequence:

>380_residues
MKRKVLALVIPALLAAGAAHAAEVYNKDGNKLDLYGKVDGLHYFSDNSGSDGDQTYVRFGFKGETQINDQLTGYGQWEYN
VQANTTEGEGANSWTRLAFAGLKFGDYGSFDYGRNYGVLYDVEGWTDMLPEFGGDSYTYADNYMTGRANGVATYRNTDFF
GLVDGLSFALQYQGNNENSGNGNEGTNNRTDDDDFRRENGDGFGISTTYDFGMGFSAGAAYTTSDRTNDQVSRGEQYAKG
DKADAWTAGLKYDANNIYLATMYSETRNMTPYGSLDSYAHGGVANKTQNFEVTAQYQFDFGLRPAVSFLMSKGKDLVNNG
VNDDKDLVKYADVGATYYFNKNFSTYVDYKINLLDDDDNFYADNGINTDDVVALGMVYQF

Sequences:

>Translated_380_residues
MKRKVLALVIPALLAAGAAHAAEVYNKDGNKLDLYGKVDGLHYFSDNSGSDGDQTYVRFGFKGETQINDQLTGYGQWEYN
VQANTTEGEGANSWTRLAFAGLKFGDYGSFDYGRNYGVLYDVEGWTDMLPEFGGDSYTYADNYMTGRANGVATYRNTDFF
GLVDGLSFALQYQGNNENSGNGNEGTNNRTDDDDFRRENGDGFGISTTYDFGMGFSAGAAYTTSDRTNDQVSRGEQYAKG
DKADAWTAGLKYDANNIYLATMYSETRNMTPYGSLDSYAHGGVANKTQNFEVTAQYQFDFGLRPAVSFLMSKGKDLVNNG
VNDDKDLVKYADVGATYYFNKNFSTYVDYKINLLDDDDNFYADNGINTDDVVALGMVYQF
>Mature_380_residues
MKRKVLALVIPALLAAGAAHAAEVYNKDGNKLDLYGKVDGLHYFSDNSGSDGDQTYVRFGFKGETQINDQLTGYGQWEYN
VQANTTEGEGANSWTRLAFAGLKFGDYGSFDYGRNYGVLYDVEGWTDMLPEFGGDSYTYADNYMTGRANGVATYRNTDFF
GLVDGLSFALQYQGNNENSGNGNEGTNNRTDDDDFRRENGDGFGISTTYDFGMGFSAGAAYTTSDRTNDQVSRGEQYAKG
DKADAWTAGLKYDANNIYLATMYSETRNMTPYGSLDSYAHGGVANKTQNFEVTAQYQFDFGLRPAVSFLMSKGKDLVNNG
VNDDKDLVKYADVGATYYFNKNFSTYVDYKINLLDDDDNFYADNGINTDDVVALGMVYQF

Specific function: Non-Specific Porin. [C]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1787641, Length=386, Percent_Identity=81.6062176165803, Blast_Score=573, Evalue=1e-165,
Organism=Escherichia coli, GI1788544, Length=382, Percent_Identity=66.2303664921466, Blast_Score=461, Evalue=1e-131,
Organism=Escherichia coli, GI1786436, Length=383, Percent_Identity=61.0966057441253, Blast_Score=451, Evalue=1e-128,
Organism=Escherichia coli, GI1787160, Length=387, Percent_Identity=57.8811369509044, Blast_Score=401, Evalue=1e-113,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 42017; Mature: 42017

Theoretical pI: Translated: 4.15; Mature: 4.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRKVLALVIPALLAAGAAHAAEVYNKDGNKLDLYGKVDGLHYFSDNSGSDGDQTYVRFG
CCCHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEEEEECCEEEECCCCCCCCCCEEEEEE
FKGETQINDQLTGYGQWEYNVQANTTEGEGANSWTRLAFAGLKFGDYGSFDYGRNYGVLY
CCCCCEECCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEE
DVEGWTDMLPEFGGDSYTYADNYMTGRANGVATYRNTDFFGLVDGLSFALQYQGNNENSG
ECCCHHHHHHHHCCCCEEEECCEEECCCCCEEEEECCCEEEECCCEEEEEEECCCCCCCC
NGNEGTNNRTDDDDFRRENGDGFGISTTYDFGMGFSAGAAYTTSDRTNDQVSRGEQYAKG
CCCCCCCCCCCCHHHHHCCCCCCCEEEEEECCCCCCCCCEEECCCCCCHHHHHCHHHCCC
DKADAWTAGLKYDANNIYLATMYSETRNMTPYGSLDSYAHGGVANKTQNFEVTAQYQFDF
CCCCEEECCEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECC
GLRPAVSFLMSKGKDLVNNGVNDDKDLVKYADVGATYYFNKNFSTYVDYKINLLDDDDNF
CCHHHHHHHHHCCHHHHHCCCCCCHHHHHHHCCCEEEEECCCCCEEEEEEEEEEECCCCE
YADNGINTDDVVALGMVYQF
EECCCCCHHHHEEEEEEECC
>Mature Secondary Structure
MKRKVLALVIPALLAAGAAHAAEVYNKDGNKLDLYGKVDGLHYFSDNSGSDGDQTYVRFG
CCCHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEEEEECCEEEECCCCCCCCCCEEEEEE
FKGETQINDQLTGYGQWEYNVQANTTEGEGANSWTRLAFAGLKFGDYGSFDYGRNYGVLY
CCCCCEECCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEE
DVEGWTDMLPEFGGDSYTYADNYMTGRANGVATYRNTDFFGLVDGLSFALQYQGNNENSG
ECCCHHHHHHHHCCCCEEEECCEEECCCCCEEEEECCCEEEECCCEEEEEEECCCCCCCC
NGNEGTNNRTDDDDFRRENGDGFGISTTYDFGMGFSAGAAYTTSDRTNDQVSRGEQYAKG
CCCCCCCCCCCCHHHHHCCCCCCCEEEEEECCCCCCCCCEEECCCCCCHHHHHCHHHCCC
DKADAWTAGLKYDANNIYLATMYSETRNMTPYGSLDSYAHGGVANKTQNFEVTAQYQFDF
CCCCEEECCEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECC
GLRPAVSFLMSKGKDLVNNGVNDDKDLVKYADVGATYYFNKNFSTYVDYKINLLDDDDNF
CCHHHHHHHHHCCHHHHHCCCCCCHHHHHHHCCCEEEEECCCCCEEEEEEEEEEECCCCE
YADNGINTDDVVALGMVYQF
EECCCCCHHHHEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]