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The map label for this gene is ydgA [H]

Identifier: 194737139

GI number: 194737139

Start: 1506652

End: 1508160

Strand: Reverse

Name: ydgA [H]

Synonym: SeSA_A1565

Alternate gene names: 194737139

Gene position: 1508160-1506652 (Counterclockwise)

Preceding gene: 194735502

Following gene: 194738396

Centisome position: 32.03

GC content: 52.15

Gene sequence:

>1509_bases
ATGAAAAAAACACTGGTAGCTGCAGGTGTAGTAATTGCACTTGGCATCGTCTGGACAGGCGGCGCCTGGTATACGGGGAA
AAAGCTGGAGAACCATCTTTCAGAAATGGTGACTCAGGCCAATGAACAGCTCAAGCGTACTGCGCCGGAGGCCGGTGTCG
AATTAAGTTATCAAAACTACCAGCGTGGCGTGTTCAGTAGCCATCTGCAACTGGTTGTCAAACCGGTTGCCGGCGCAGAC
ACTACCTGGTTGAAACCCGGGCAAAGCATTGTGCTGGACGAGTCCGTTTCACATGGTCCCTTCCCGCTCGCCCAGCTCAA
AACGCTCAATCTGATCCCTTCTATGGCGTCGGTAAAAACCACCCTGGTGAATAACGATGCGGCAAAACCCCTCTTTGATA
TCGCGAAAGGCGACACGCCCTTTGTTATCAATACCCGCATTGGTTATGGCGGCGATACCCGCTCCGATATCTCTCTCAAG
CCGTTAAACTACGAGAATGCCGGTGAAAAGGTCGCCTTTAGCGGCGGCGAGTTCCAGCTTAACGCCGATAAAGACGGTAA
TGTGGTTTCGCTGTCGGGCGAAGCGCAGAGCGGCCTGGTCGATGCCGTTAACGAATATAATCAGAAGGTCCAACTCACCT
TTAATAATTTGAAAACAGACGGTACCAGTAAGCTGGCAAGCTTTGGCGAGCGTGTAGGCGACCAAAAGTTAACGCTGGAT
AAACTGTCCATCGCCATTGAGGGTAAAGAGATGGCGGTGCTGGAAGGGATGGAAATTGCCGGCAAGTCCGATCTCGTCAA
CGACGGAAAAACCATTAACAGCCAGTTGGATTACTCGCTTAACAGCCTGAAAGTGCAGAATCAGGATTTGGGCAGCGGTA
AATTAACGCTGAAAGTCGGTCAAATCGACGGCGAAGCCTGGCACCAGTTTAGTCAGCAATATCATGCGCAAACGCAGGCG
CTGTTGAATCAGCCGGACGTGGCGCAGAATCCTGAGCTTTATCAGCAAAAAGTTACTGAAGCGTTCTTTAGCGCTCTCCC
CGTGCTGTTAAAAGGCGATCCGGTACTGACTCTGGCGCCGCTTAGCTGGAAAAACGCCAAAGGGGAAACCACGCTGAATC
TGTCGCTGTTCCTCAAAGATCCGGCAACCACAACGGCACAACCGCAAACGCTGGCGCAGGAAGTCGACCGCTCCGTGAAA
TCGCTGGATGCGAAACTGGCAATTCCAATGGACATGGCGGTCGAGTTTATGACGCAGATAGCAAAGCTGGAAGGCTATCA
GCAGGATGATGCGGAAAAACTGGCAAAACAACAGGTGCAGGGGCTGTCCGCAATGGGTCAGATGTTCCGACTGACAACGC
TGAAGGATAATACTATCGCCTCCAGTTTGCAGTACGCCAATGGCCAGATCACGCTCAACGGACAAAAAATGCCGTTGGAA
GACTTTGTCGGCCTGTTTGGAATGCCAGCGCTTTCCGTACCGGACGTTCCGGCGCTGCCTCAACAATAA

Upstream 100 bases:

>100_bases
ACGTACTGAATTTTTTAACAACTCTTGCTAAGCTTATAACAGACGTAAAACTCCTCCAGGCGGTTTAATCCGCCTGGTTT
CATTTTTATGGACAATTGAT

Downstream 100 bases:

>100_bases
TCGCCTTGCCGGGTGTCGCGACGCTGCACCCGGTCTGCGCCGAACGACGCGCAGCCTCTACTTTTGCGTTACCAGGCGAG
CGGCTATCGTTTGACTCCGC

Product: protein YdgA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 502; Mature: 502

Protein sequence:

>502_residues
MKKTLVAAGVVIALGIVWTGGAWYTGKKLENHLSEMVTQANEQLKRTAPEAGVELSYQNYQRGVFSSHLQLVVKPVAGAD
TTWLKPGQSIVLDESVSHGPFPLAQLKTLNLIPSMASVKTTLVNNDAAKPLFDIAKGDTPFVINTRIGYGGDTRSDISLK
PLNYENAGEKVAFSGGEFQLNADKDGNVVSLSGEAQSGLVDAVNEYNQKVQLTFNNLKTDGTSKLASFGERVGDQKLTLD
KLSIAIEGKEMAVLEGMEIAGKSDLVNDGKTINSQLDYSLNSLKVQNQDLGSGKLTLKVGQIDGEAWHQFSQQYHAQTQA
LLNQPDVAQNPELYQQKVTEAFFSALPVLLKGDPVLTLAPLSWKNAKGETTLNLSLFLKDPATTTAQPQTLAQEVDRSVK
SLDAKLAIPMDMAVEFMTQIAKLEGYQQDDAEKLAKQQVQGLSAMGQMFRLTTLKDNTIASSLQYANGQITLNGQKMPLE
DFVGLFGMPALSVPDVPALPQQ

Sequences:

>Translated_502_residues
MKKTLVAAGVVIALGIVWTGGAWYTGKKLENHLSEMVTQANEQLKRTAPEAGVELSYQNYQRGVFSSHLQLVVKPVAGAD
TTWLKPGQSIVLDESVSHGPFPLAQLKTLNLIPSMASVKTTLVNNDAAKPLFDIAKGDTPFVINTRIGYGGDTRSDISLK
PLNYENAGEKVAFSGGEFQLNADKDGNVVSLSGEAQSGLVDAVNEYNQKVQLTFNNLKTDGTSKLASFGERVGDQKLTLD
KLSIAIEGKEMAVLEGMEIAGKSDLVNDGKTINSQLDYSLNSLKVQNQDLGSGKLTLKVGQIDGEAWHQFSQQYHAQTQA
LLNQPDVAQNPELYQQKVTEAFFSALPVLLKGDPVLTLAPLSWKNAKGETTLNLSLFLKDPATTTAQPQTLAQEVDRSVK
SLDAKLAIPMDMAVEFMTQIAKLEGYQQDDAEKLAKQQVQGLSAMGQMFRLTTLKDNTIASSLQYANGQITLNGQKMPLE
DFVGLFGMPALSVPDVPALPQQ
>Mature_502_residues
MKKTLVAAGVVIALGIVWTGGAWYTGKKLENHLSEMVTQANEQLKRTAPEAGVELSYQNYQRGVFSSHLQLVVKPVAGAD
TTWLKPGQSIVLDESVSHGPFPLAQLKTLNLIPSMASVKTTLVNNDAAKPLFDIAKGDTPFVINTRIGYGGDTRSDISLK
PLNYENAGEKVAFSGGEFQLNADKDGNVVSLSGEAQSGLVDAVNEYNQKVQLTFNNLKTDGTSKLASFGERVGDQKLTLD
KLSIAIEGKEMAVLEGMEIAGKSDLVNDGKTINSQLDYSLNSLKVQNQDLGSGKLTLKVGQIDGEAWHQFSQQYHAQTQA
LLNQPDVAQNPELYQQKVTEAFFSALPVLLKGDPVLTLAPLSWKNAKGETTLNLSLFLKDPATTTAQPQTLAQEVDRSVK
SLDAKLAIPMDMAVEFMTQIAKLEGYQQDDAEKLAKQQVQGLSAMGQMFRLTTLKDNTIASSLQYANGQITLNGQKMPLE
DFVGLFGMPALSVPDVPALPQQ

Specific function: Unknown

COG id: COG5339

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Periplasmic side. Note=Has been isolated in association with the inner membrane, suggesting it may be tethered to the membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yihF and H.influenzae HI_1236 [H]

Homologues:

Organism=Escherichia coli, GI1787900, Length=502, Percent_Identity=79.8804780876494, Blast_Score=854, Evalue=0.0,
Organism=Escherichia coli, GI87082339, Length=484, Percent_Identity=32.8512396694215, Blast_Score=259, Evalue=4e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010352 [H]

Pfam domain/function: PF06097 DUF945 [H]

EC number: NA

Molecular weight: Translated: 54287; Mature: 54287

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTLVAAGVVIALGIVWTGGAWYTGKKLENHLSEMVTQANEQLKRTAPEAGVELSYQNY
CCCHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHH
QRGVFSSHLQLVVKPVAGADTTWLKPGQSIVLDESVSHGPFPLAQLKTLNLIPSMASVKT
HHHHHHHHHHEEEEECCCCCCCEECCCCEEEEECCCCCCCCCHHHHHHHHHCCCHHHHHH
TLVNNDAAKPLFDIAKGDTPFVINTRIGYGGDTRSDISLKPLNYENAGEKVAFSGGEFQL
EEECCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCEECCCCCCCCCCEEEECCCEEEE
NADKDGNVVSLSGEAQSGLVDAVNEYNQKVQLTFNNLKTDGTSKLASFGERVGDQKLTLD
ECCCCCCEEEECCCCCCHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEE
KLSIAIEGKEMAVLEGMEIAGKSDLVNDGKTINSQLDYSLNSLKVQNQDLGSGKLTLKVG
EEEEEECCCEEEEECCCCCCCCCCCCCCCCEECCHHCCCHHHEEEECCCCCCCEEEEEEE
QIDGEAWHQFSQQYHAQTQALLNQPDVAQNPELYQQKVTEAFFSALPVLLKGDPVLTLAP
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEECCCCEEEEEC
LSWKNAKGETTLNLSLFLKDPATTTAQPQTLAQEVDRSVKSLDAKLAIPMDMAVEFMTQI
CCCCCCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHH
AKLEGYQQDDAEKLAKQQVQGLSAMGQMFRLTTLKDNTIASSLQYANGQITLNGQKMPLE
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHEECCCEEEECCCCCCHH
DFVGLFGMPALSVPDVPALPQQ
HHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKKTLVAAGVVIALGIVWTGGAWYTGKKLENHLSEMVTQANEQLKRTAPEAGVELSYQNY
CCCHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHH
QRGVFSSHLQLVVKPVAGADTTWLKPGQSIVLDESVSHGPFPLAQLKTLNLIPSMASVKT
HHHHHHHHHHEEEEECCCCCCCEECCCCEEEEECCCCCCCCCHHHHHHHHHCCCHHHHHH
TLVNNDAAKPLFDIAKGDTPFVINTRIGYGGDTRSDISLKPLNYENAGEKVAFSGGEFQL
EEECCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCEECCCCCCCCCCEEEECCCEEEE
NADKDGNVVSLSGEAQSGLVDAVNEYNQKVQLTFNNLKTDGTSKLASFGERVGDQKLTLD
ECCCCCCEEEECCCCCCHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEE
KLSIAIEGKEMAVLEGMEIAGKSDLVNDGKTINSQLDYSLNSLKVQNQDLGSGKLTLKVG
EEEEEECCCEEEEECCCCCCCCCCCCCCCCEECCHHCCCHHHEEEECCCCCCCEEEEEEE
QIDGEAWHQFSQQYHAQTQALLNQPDVAQNPELYQQKVTEAFFSALPVLLKGDPVLTLAP
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEECCCCEEEEEC
LSWKNAKGETTLNLSLFLKDPATTTAQPQTLAQEVDRSVKSLDAKLAIPMDMAVEFMTQI
CCCCCCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHH
AKLEGYQQDDAEKLAKQQVQGLSAMGQMFRLTTLKDNTIASSLQYANGQITLNGQKMPLE
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHEECCCEEEECCCCCCHH
DFVGLFGMPALSVPDVPALPQQ
HHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]