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The map label for this gene is intA [H]

Identifier: 194736662

GI number: 194736662

Start: 2797034

End: 2798305

Strand: Direct

Name: intA [H]

Synonym: SeSA_A2892

Alternate gene names: 194736662

Gene position: 2797034-2798305 (Clockwise)

Preceding gene: 194735786

Following gene: 194734002

Centisome position: 59.4

GC content: 44.5

Gene sequence:

>1272_bases
ATGGGACCCACTAAGAAGGGTCCAAAAACCGAGGGTCCCCAAATGGCAAAAATCGCTAAGAAGCTCACTGACACTGAAAT
CAAAAGCACCAAGCCAGCCGACAAAGAAATCAACTTGTTTGACGGAGATGGTTTGATACTACGAATCGCTCCCCTCTCGA
AAGGAGGAAAGAAGAATTGGTATTTCAGGTATGCAGTGCCAGTCAGTAAAAAAAGAACCAAAATGAGCCTTGGGACCTAT
CCTCACCTTACACTTGCAAGAGCCAGAGCCTTACGAGATGAATATCTTTCCTTGCTTGCTAATGGCATTGATCCCCAAGT
TCATAACAACGATAAAGCTAATGCCTTAAAGAATGCTACTGAACACACTCTCCAGGCCGTGGCAAGGAAATGGTTGGATG
AGAAGGTAAAGACCTCAGGTATCTCACAAGACCATGCAGAAGACATCTGGCGGAGCCTTGAACGAAATATTTTACCCGGT
CTGGGTAATGTGCCAATCAATGAGATCCGTCCCAAGCTCTTAAAACAGCATCTTGATCCAATTGAACAACGAGGAGTACT
GGAAACTTTGCGACGGCTCATTTCCAGGTTGAATGAAATTTTCCGTTGGGCGGCTACAGAAGAGCTGATTGAATTTAACC
CCGCAGATAATCTGAGCCAACGTTTCAGTAAGCCTAAAAAGCAGAATATGCCTGCCCTACCCCCCTCTGAACTCCCTCGC
TTTCTGGCAGCACTGAACAATGCATCTGTCCGTTTAGAAACAAGACTACTGATTGAATGGCAACTTCTCACATGGGTTCG
CCCCGGTGAAGCTGTCCGCGCAAGATGGTCTGATATAGATATGGATAACAGCATGTGGAACATCCCGGCTGAATTTATGA
AGATGAAAAAACCTCATAAGGTTCCATTAAGCAAAGAATCTCTTCGGATACTTAAATCTATGGAATCAATCAGTGGGCAT
CGCGAATGGGTATTTCCCAGTATAAAAGCCCCACTCAATCATATGCATGAACAGACAGCTAACGCAGCAATTATCCGTAT
GGGATTTGGTGGTGAGCTTGTGGCACATGGAATGCGATCTATAGCAAGAACGGCAGCAGAAGAATCAGGAAAATTCAGGA
CCGAGGTGCTCGAAGCAGCACTTGCCCACTCTAAAAAGGACGAAATCATTGCAGCATATAATCGTGCGGAATATATTTCA
GAAAGAGAAAAACTTATGCAATGGTGGAGTAATTATATTCAGTCACAACGACTTAAAACTATCGCAGCCTAA

Upstream 100 bases:

>100_bases
TGAAGTCTACTAAGCCCGCACAGCACAAGCTCTGCGGGCTTTTTTACGTCTATTGTCGTCCAGTGAGAATTGCTGAGAAC
TATCACTTATGGCACCCTGA

Downstream 100 bases:

>100_bases
ATGGACGAAAGGCTACTCCAAAAGTAGCCTTTCCAATATCCCCATAACATGGGGCAATTAGCAAACTATATACAGTACAG
GATACATGTCATAAAACCAT

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 423; Mature: 422

Protein sequence:

>423_residues
MGPTKKGPKTEGPQMAKIAKKLTDTEIKSTKPADKEINLFDGDGLILRIAPLSKGGKKNWYFRYAVPVSKKRTKMSLGTY
PHLTLARARALRDEYLSLLANGIDPQVHNNDKANALKNATEHTLQAVARKWLDEKVKTSGISQDHAEDIWRSLERNILPG
LGNVPINEIRPKLLKQHLDPIEQRGVLETLRRLISRLNEIFRWAATEELIEFNPADNLSQRFSKPKKQNMPALPPSELPR
FLAALNNASVRLETRLLIEWQLLTWVRPGEAVRARWSDIDMDNSMWNIPAEFMKMKKPHKVPLSKESLRILKSMESISGH
REWVFPSIKAPLNHMHEQTANAAIIRMGFGGELVAHGMRSIARTAAEESGKFRTEVLEAALAHSKKDEIIAAYNRAEYIS
EREKLMQWWSNYIQSQRLKTIAA

Sequences:

>Translated_423_residues
MGPTKKGPKTEGPQMAKIAKKLTDTEIKSTKPADKEINLFDGDGLILRIAPLSKGGKKNWYFRYAVPVSKKRTKMSLGTY
PHLTLARARALRDEYLSLLANGIDPQVHNNDKANALKNATEHTLQAVARKWLDEKVKTSGISQDHAEDIWRSLERNILPG
LGNVPINEIRPKLLKQHLDPIEQRGVLETLRRLISRLNEIFRWAATEELIEFNPADNLSQRFSKPKKQNMPALPPSELPR
FLAALNNASVRLETRLLIEWQLLTWVRPGEAVRARWSDIDMDNSMWNIPAEFMKMKKPHKVPLSKESLRILKSMESISGH
REWVFPSIKAPLNHMHEQTANAAIIRMGFGGELVAHGMRSIARTAAEESGKFRTEVLEAALAHSKKDEIIAAYNRAEYIS
EREKLMQWWSNYIQSQRLKTIAA
>Mature_422_residues
GPTKKGPKTEGPQMAKIAKKLTDTEIKSTKPADKEINLFDGDGLILRIAPLSKGGKKNWYFRYAVPVSKKRTKMSLGTYP
HLTLARARALRDEYLSLLANGIDPQVHNNDKANALKNATEHTLQAVARKWLDEKVKTSGISQDHAEDIWRSLERNILPGL
GNVPINEIRPKLLKQHLDPIEQRGVLETLRRLISRLNEIFRWAATEELIEFNPADNLSQRFSKPKKQNMPALPPSELPRF
LAALNNASVRLETRLLIEWQLLTWVRPGEAVRARWSDIDMDNSMWNIPAEFMKMKKPHKVPLSKESLRILKSMESISGHR
EWVFPSIKAPLNHMHEQTANAAIIRMGFGGELVAHGMRSIARTAAEESGKFRTEVLEAALAHSKKDEIIAAYNRAEYISE
REKLMQWWSNYIQSQRLKTIAA

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1788974, Length=401, Percent_Identity=46.6334164588529, Blast_Score=378, Evalue=1e-106,
Organism=Escherichia coli, GI145693166, Length=405, Percent_Identity=33.0864197530864, Blast_Score=180, Evalue=2e-46,
Organism=Escherichia coli, GI1788690, Length=396, Percent_Identity=28.030303030303, Blast_Score=167, Evalue=1e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 48177; Mature: 48046

Theoretical pI: Translated: 10.52; Mature: 10.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGPTKKGPKTEGPQMAKIAKKLTDTEIKSTKPADKEINLFDGDGLILRIAPLSKGGKKNW
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEEECCCCCCCCCC
YFRYAVPVSKKRTKMSLGTYPHLTLARARALRDEYLSLLANGIDPQVHNNDKANALKNAT
EEEEECCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
EHTLQAVARKWLDEKVKTSGISQDHAEDIWRSLERNILPGLGNVPINEIRPKLLKQHLDP
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCH
IEQRGVLETLRRLISRLNEIFRWAATEELIEFNPADNLSQRFSKPKKQNMPALPPSELPR
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHCCCCCCCHHHHHH
FLAALNNASVRLETRLLIEWQLLTWVRPGEAVRARWSDIDMDNSMWNIPAEFMKMKKPHK
HHHHHCCCCEEEEEEEEEEEHHHHHCCCCHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCC
VPLSKESLRILKSMESISGHREWVFPSIKAPLNHMHEQTANAAIIRMGFGGELVAHGMRS
CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHH
IARTAAEESGKFRTEVLEAALAHSKKDEIIAAYNRAEYISEREKLMQWWSNYIQSQRLKT
HHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAA
HCC
>Mature Secondary Structure 
GPTKKGPKTEGPQMAKIAKKLTDTEIKSTKPADKEINLFDGDGLILRIAPLSKGGKKNW
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEEECCCCCCCCCC
YFRYAVPVSKKRTKMSLGTYPHLTLARARALRDEYLSLLANGIDPQVHNNDKANALKNAT
EEEEECCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
EHTLQAVARKWLDEKVKTSGISQDHAEDIWRSLERNILPGLGNVPINEIRPKLLKQHLDP
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCH
IEQRGVLETLRRLISRLNEIFRWAATEELIEFNPADNLSQRFSKPKKQNMPALPPSELPR
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHCCCCCCCHHHHHH
FLAALNNASVRLETRLLIEWQLLTWVRPGEAVRARWSDIDMDNSMWNIPAEFMKMKKPHK
HHHHHCCCCEEEEEEEEEEEHHHHHCCCCHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCC
VPLSKESLRILKSMESISGHREWVFPSIKAPLNHMHEQTANAAIIRMGFGGELVAHGMRS
CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHH
IARTAAEESGKFRTEVLEAALAHSKKDEIIAAYNRAEYISEREKLMQWWSNYIQSQRLKT
HHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAA
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7511583; 9278503; 9205837; 7524073 [H]