| Definition | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 chromosome, complete genome. |
|---|---|
| Accession | NC_011094 |
| Length | 4,709,075 |
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The map label for this gene is licR [H]
Identifier: 194736571
GI number: 194736571
Start: 4565375
End: 4567288
Strand: Direct
Name: licR [H]
Synonym: SeSA_A4699
Alternate gene names: 194736571
Gene position: 4565375-4567288 (Clockwise)
Preceding gene: 194735522
Following gene: 194737059
Centisome position: 96.95
GC content: 53.5
Gene sequence:
>1914_bases GTGCGATTCCCCAACCAACGTTTAGCGCAGCTATTTGCGATGCTGCAAAACGAGACGCTGCCGCAGGACGAGCTGGCGCA GCGGTTGTCGGTCTCCACGCGTACTGTTCGGGCGGATATCGCCGCGCTGAACATGTTGCTGACGCCGCATGGCGCGCAAT TTACTCTCAGCCGCGGCAATGGGTATCAGCTCAAAATTGATGATCCGGCACGTTATCAATCCCTGCAAACGCAGCAATCT CCCACGCTGGCGCGCGGTCCGCGCACCAGCCAGGAGCGGATACACTATTTGCTGGCGCGTTTTTTAACCTCCGCTTTCTC GCTGAAGCTGGAGGATTTAGCAGATGAATGGTTTGTCAGCCGTGCGACGTTGCAGAACGATATGGCGGACGTGCGCGAGC ATTTGCTGCGTTATCATCTGACGCTGGAAACGCGTCCGCGTCATGGCATGAAACTGTTTGGCGGAGAGATGGCGATTCGC GCCTGTCTGACCGACCTTTTATGGACGCTGGCGCAGCAGGAGCCCTCCCATCCGTTAATTGTTAGTACCACGCTGAACAC CGAGGTGTCTCAACGGCTGCAGTCTCTTTTGCCGGATATTTTCTCTCATTGTCAAATCCGCCTGACCGATGAGGGCGAGC TGTTTCTGCGTTTATACTGCGCGGTGGCGGTACGGCGTATTCGCGAGGGGTATCCGTTATCGGAATGCGTGGCGGAGGAG GTCGATGAAAAGGTGCGCCATGCGGCGCATGAAATTGCGGAGCTACTACAACAGCTGGCCGACAAGCCGCTGTCGGAGCC GGAAGTAAGCTGGCTGAAGGTGCATATTGCCGCCCGCCAGGTACAGGAGATTGCCCCCAGCGCCATTAATGCCGATGATG AAGAGGCGCTGGTGCGCTATATCCTCAATTTTATTAATACCCAGTACAACTATAACCTATTGAATGATAAACAGCTTCAC GCGGACTTGCTGACCCACATCAAAACGATGATCACCCGCGTGCGCTACCAGATCATGATCCCCAACCCACTACTGGAAAA TATTAAGCAGCACTATCCGATGGCGTGGGATATGACATTGGCGGCGATATCGAGTTGGGGAAAATACACGCCGTATACCA TTAGCGAAAACGAAATCGGTTTTCTGGTGCTGCATATTGGCGTTGGGCTGGAACGTAGTTACAACATTGGCTACCAGCGG CAGCCGCAGGTACTGCTGGTGTGTGATGCTGGTAATGCGATGGTGCGGATGATTGAAGCGGTACTGGCGCGGAAATACCC GCAGATTGAGATAGCCCGCACTTTGACGCTACGCGACTATGAGGCGCGGGACAGTATTGTGGAGGATTTTGTGATTTCCA CGGCGCGGATCGGTGAAAAAGATAAACCGGTCATCATGATCGCGCCCTTTCCTACCGACTATCAATTGGAGCAGATCGGT AAGCTGGTGCTGGTGGACAGAACCCGTCCGTGGATGCTGGATAAATATTTCGATGCCTCGCATTTTCGCATTGTGGAAGG GGAAATAGATCAACAGACGCTGTTTAAAACGCTGTGCGATCAGTTGCATGAGGAAGGCTTTGTTGATGCGGCGTTTCTCG ATTCGGTTATTGAACGTGAAGCTATCGTCAGTACGTTATTAGGCGACGGGATTGCCTTGCCACACGCGCTGGGGCTGCTG GCGAAGAAAACGGTGGTTTATACGGTGCTCGCGCCACAGGGGATTGCCTGGGGTGATGAAACGGCGCACGTTATTTTTTT ACTCGCCATCAGCAAAAGTGAATATGAAGAGGCGATGGCCATCTACGATATTTTCGTCACTTTCCTGCGCGAACGCGCCA TGACGCGCCTCTGCGCATGTCAGAATTTTACGCAATTTAAAACGGTCGCGATGGAGTGCGTGAGTCGTTTTTGA
Upstream 100 bases:
>100_bases TCGATTATTGATAAGGTGAGCGGCAACACCCGTGCGGACGATGTGCGTCAGTTACTCGCTATCGTCCGGTCGCGTGTCGG CTAATCATGAGGAGAGAGAC
Downstream 100 bases:
>100_bases GAGGCGTTATCCAGAATTCGATGTAATGCGAATGTAATGCTAAACTGCATTACACATTCGATTTTACTGGAGGCATAATG GCCACGCTGAACGTCCGTCT
Product: transcriptional antiterminator, BglG
Products: NA
Alternate protein names: Putative phosphotransferase enzyme IIB component; Putative PTS system EIIB component; Putative phosphotransferase enzyme IIA component; Putative PTS system EIIA component [H]
Number of amino acids: Translated: 637; Mature: 637
Protein sequence:
>637_residues MRFPNQRLAQLFAMLQNETLPQDELAQRLSVSTRTVRADIAALNMLLTPHGAQFTLSRGNGYQLKIDDPARYQSLQTQQS PTLARGPRTSQERIHYLLARFLTSAFSLKLEDLADEWFVSRATLQNDMADVREHLLRYHLTLETRPRHGMKLFGGEMAIR ACLTDLLWTLAQQEPSHPLIVSTTLNTEVSQRLQSLLPDIFSHCQIRLTDEGELFLRLYCAVAVRRIREGYPLSECVAEE VDEKVRHAAHEIAELLQQLADKPLSEPEVSWLKVHIAARQVQEIAPSAINADDEEALVRYILNFINTQYNYNLLNDKQLH ADLLTHIKTMITRVRYQIMIPNPLLENIKQHYPMAWDMTLAAISSWGKYTPYTISENEIGFLVLHIGVGLERSYNIGYQR QPQVLLVCDAGNAMVRMIEAVLARKYPQIEIARTLTLRDYEARDSIVEDFVISTARIGEKDKPVIMIAPFPTDYQLEQIG KLVLVDRTRPWMLDKYFDASHFRIVEGEIDQQTLFKTLCDQLHEEGFVDAAFLDSVIEREAIVSTLLGDGIALPHALGLL AKKTVVYTVLAPQGIAWGDETAHVIFLLAISKSEYEEAMAIYDIFVTFLRERAMTRLCACQNFTQFKTVAMECVSRF
Sequences:
>Translated_637_residues MRFPNQRLAQLFAMLQNETLPQDELAQRLSVSTRTVRADIAALNMLLTPHGAQFTLSRGNGYQLKIDDPARYQSLQTQQS PTLARGPRTSQERIHYLLARFLTSAFSLKLEDLADEWFVSRATLQNDMADVREHLLRYHLTLETRPRHGMKLFGGEMAIR ACLTDLLWTLAQQEPSHPLIVSTTLNTEVSQRLQSLLPDIFSHCQIRLTDEGELFLRLYCAVAVRRIREGYPLSECVAEE VDEKVRHAAHEIAELLQQLADKPLSEPEVSWLKVHIAARQVQEIAPSAINADDEEALVRYILNFINTQYNYNLLNDKQLH ADLLTHIKTMITRVRYQIMIPNPLLENIKQHYPMAWDMTLAAISSWGKYTPYTISENEIGFLVLHIGVGLERSYNIGYQR QPQVLLVCDAGNAMVRMIEAVLARKYPQIEIARTLTLRDYEARDSIVEDFVISTARIGEKDKPVIMIAPFPTDYQLEQIG KLVLVDRTRPWMLDKYFDASHFRIVEGEIDQQTLFKTLCDQLHEEGFVDAAFLDSVIEREAIVSTLLGDGIALPHALGLL AKKTVVYTVLAPQGIAWGDETAHVIFLLAISKSEYEEAMAIYDIFVTFLRERAMTRLCACQNFTQFKTVAMECVSRF >Mature_637_residues MRFPNQRLAQLFAMLQNETLPQDELAQRLSVSTRTVRADIAALNMLLTPHGAQFTLSRGNGYQLKIDDPARYQSLQTQQS PTLARGPRTSQERIHYLLARFLTSAFSLKLEDLADEWFVSRATLQNDMADVREHLLRYHLTLETRPRHGMKLFGGEMAIR ACLTDLLWTLAQQEPSHPLIVSTTLNTEVSQRLQSLLPDIFSHCQIRLTDEGELFLRLYCAVAVRRIREGYPLSECVAEE VDEKVRHAAHEIAELLQQLADKPLSEPEVSWLKVHIAARQVQEIAPSAINADDEEALVRYILNFINTQYNYNLLNDKQLH ADLLTHIKTMITRVRYQIMIPNPLLENIKQHYPMAWDMTLAAISSWGKYTPYTISENEIGFLVLHIGVGLERSYNIGYQR QPQVLLVCDAGNAMVRMIEAVLARKYPQIEIARTLTLRDYEARDSIVEDFVISTARIGEKDKPVIMIAPFPTDYQLEQIG KLVLVDRTRPWMLDKYFDASHFRIVEGEIDQQTLFKTLCDQLHEEGFVDAAFLDSVIEREAIVSTLLGDGIALPHALGLL AKKTVVYTVLAPQGIAWGDETAHVIFLLAISKSEYEEAMAIYDIFVTFLRERAMTRLCACQNFTQFKTVAMECVSRF
Specific function: Positive regulator of the licABCH operon [H]
COG id: COG3711
COG function: function code K; Transcriptional antiterminator
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PTS EIIB type-2 domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013196 - InterPro: IPR007737 - InterPro: IPR011608 - InterPro: IPR016152 - InterPro: IPR002178 - InterPro: IPR013011 - InterPro: IPR003501 - InterPro: IPR011991 [H]
Pfam domain/function: PF08279 HTH_11; PF05043 Mga; PF00874 PRD; PF00359 PTS_EIIA_2; PF02302 PTS_IIB [H]
EC number: =2.7.1.69 [H]
Molecular weight: Translated: 72755; Mature: 72755
Theoretical pI: Translated: 5.84; Mature: 5.84
Prosite motif: PS00894 HTH_DEOR_1 ; PS00372 PTS_EIIA_TYPE_2_HIS ; PS51094 PTS_EIIA_TYPE_2 ; PS51099 PTS_EIIB_TYPE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRFPNQRLAQLFAMLQNETLPQDELAQRLSVSTRTVRADIAALNMLLTPHGAQFTLSRGN CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCC GYQLKIDDPARYQSLQTQQSPTLARGPRTSQERIHYLLARFLTSAFSLKLEDLADEWFVS CEEEEECCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RATLQNDMADVREHLLRYHLTLETRPRHGMKLFGGEMAIRACLTDLLWTLAQQEPSHPLI HHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEE VSTTLNTEVSQRLQSLLPDIFSHCQIRLTDEGELFLRLYCAVAVRRIREGYPLSECVAEE EEEECCHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH VDEKVRHAAHEIAELLQQLADKPLSEPEVSWLKVHIAARQVQEIAPSAINADDEEALVRY HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH ILNFINTQYNYNLLNDKQLHADLLTHIKTMITRVRYQIMIPNPLLENIKQHYPMAWDMTL HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHCCCHHHHHH AAISSWGKYTPYTISENEIGFLVLHIGVGLERSYNIGYQRQPQVLLVCDAGNAMVRMIEA HHHHHCCCCCCEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHH VLARKYPQIEIARTLTLRDYEARDSIVEDFVISTARIGEKDKPVIMIAPFPTDYQLEQIG HHHCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHCC KLVLVDRTRPWMLDKYFDASHFRIVEGEIDQQTLFKTLCDQLHEEGFVDAAFLDSVIERE CEEEEECCCCCHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH AIVSTLLGDGIALPHALGLLAKKTVVYTVLAPQGIAWGDETAHVIFLLAISKSEYEEAMA HHHHHHHCCCCHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCEEEEEEEECHHHHHHHHH IYDIFVTFLRERAMTRLCACQNFTQFKTVAMECVSRF HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC >Mature Secondary Structure MRFPNQRLAQLFAMLQNETLPQDELAQRLSVSTRTVRADIAALNMLLTPHGAQFTLSRGN CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCC GYQLKIDDPARYQSLQTQQSPTLARGPRTSQERIHYLLARFLTSAFSLKLEDLADEWFVS CEEEEECCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RATLQNDMADVREHLLRYHLTLETRPRHGMKLFGGEMAIRACLTDLLWTLAQQEPSHPLI HHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEE VSTTLNTEVSQRLQSLLPDIFSHCQIRLTDEGELFLRLYCAVAVRRIREGYPLSECVAEE EEEECCHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH VDEKVRHAAHEIAELLQQLADKPLSEPEVSWLKVHIAARQVQEIAPSAINADDEEALVRY HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH ILNFINTQYNYNLLNDKQLHADLLTHIKTMITRVRYQIMIPNPLLENIKQHYPMAWDMTL HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHCCCHHHHHH AAISSWGKYTPYTISENEIGFLVLHIGVGLERSYNIGYQRQPQVLLVCDAGNAMVRMIEA HHHHHCCCCCCEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHH VLARKYPQIEIARTLTLRDYEARDSIVEDFVISTARIGEKDKPVIMIAPFPTDYQLEQIG HHHCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHCC KLVLVDRTRPWMLDKYFDASHFRIVEGEIDQQTLFKTLCDQLHEEGFVDAAFLDSVIERE CEEEEECCCCCHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH AIVSTLLGDGIALPHALGLLAKKTVVYTVLAPQGIAWGDETAHVIFLLAISKSEYEEAMA HHHHHHHCCCCHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCEEEEEEEECHHHHHHHHH IYDIFVTFLRERAMTRLCACQNFTQFKTVAMECVSRF HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8990303; 8969509; 9384377; 10438772 [H]