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The map label for this gene is lptC [H]

Identifier: 194736180

GI number: 194736180

Start: 3381664

End: 3382239

Strand: Direct

Name: lptC [H]

Synonym: SeSA_A3509

Alternate gene names: 194736180

Gene position: 3381664-3382239 (Clockwise)

Preceding gene: 194735665

Following gene: 194737776

Centisome position: 71.81

GC content: 47.22

Gene sequence:

>576_bases
ATGAGTAAAACCAGACGTTGGGTTATCATTCTACTGTCGCTGGCCATTCTGGTACTGATTGGTATCAATCTGGCGGATAA
AGACGATCCTGCTGCCGTGATGGTCAACAGCAACGATCCCACGTATAAAAGCGAGCATACGGATACCGTCGTGTACAGTC
CGGAAGGCGCGTTGAGCTATCGTCTGATCGCGCAGCACGTTGAATATTTTTCCGATCAGGCGGTCTCATGGTTTACGCAA
CCGGTATTAACCACCTTTGATAAGGATAAAGTGCCGACATGGTCGATCAAGGCCGATAAAGCCAAATTGACTAACGATCG
GATGCTCTATCTGTATGGTCATGTTGAAGTCAACGCCCTGGTGCCTGACGCTCAATTACGCAGAATTACCACCGATAACG
CGCAGATTAATCTGGTGACGCAGGATGTTACCTCGAACGATCTGGTGACGTTATACGGCACAACATTTAACTCCAGCGGA
CTGAAAATGCGCGGTAACTTACGCAGCAAGAACGCCGAGCTGATTGAAAAGGTTAGAACCTCTTATGAAATTCAAAACAA
ACAAACTCAGCCTTAA

Upstream 100 bases:

>100_bases
ATGTGACGCACATTGCCGGCGGGCGCGGCGCGGTACGTGAGGTGTGCGATTTGCTGCTGCTGGCGCAGGGCAAGCTGGAT
GAGGCCAAAGGGCAATCGAT

Downstream 100 bases:

>100_bases
TCTTATGCTTGCCGGCTCGCTGCTGGCCGCCAGCATTCCGGCTTTCGCCGTCACGGGCGATACCGAACAGCCTATTCATA
TTGACTCGGATCAACAGTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 190

Protein sequence:

>191_residues
MSKTRRWVIILLSLAILVLIGINLADKDDPAAVMVNSNDPTYKSEHTDTVVYSPEGALSYRLIAQHVEYFSDQAVSWFTQ
PVLTTFDKDKVPTWSIKADKAKLTNDRMLYLYGHVEVNALVPDAQLRRITTDNAQINLVTQDVTSNDLVTLYGTTFNSSG
LKMRGNLRSKNAELIEKVRTSYEIQNKQTQP

Sequences:

>Translated_191_residues
MSKTRRWVIILLSLAILVLIGINLADKDDPAAVMVNSNDPTYKSEHTDTVVYSPEGALSYRLIAQHVEYFSDQAVSWFTQ
PVLTTFDKDKVPTWSIKADKAKLTNDRMLYLYGHVEVNALVPDAQLRRITTDNAQINLVTQDVTSNDLVTLYGTTFNSSG
LKMRGNLRSKNAELIEKVRTSYEIQNKQTQP
>Mature_190_residues
SKTRRWVIILLSLAILVLIGINLADKDDPAAVMVNSNDPTYKSEHTDTVVYSPEGALSYRLIAQHVEYFSDQAVSWFTQP
VLTTFDKDKVPTWSIKADKAKLTNDRMLYLYGHVEVNALVPDAQLRRITTDNAQINLVTQDVTSNDLVTLYGTTFNSSGL
KMRGNLRSKNAELIEKVRTSYEIQNKQTQP

Specific function: Required for the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG3117

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptC family [H]

Homologues:

Organism=Escherichia coli, GI1789591, Length=191, Percent_Identity=91.0994764397906, Blast_Score=368, Evalue=1e-103,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010664 [H]

Pfam domain/function: PF06835 DUF1239 [H]

EC number: NA

Molecular weight: Translated: 21567; Mature: 21436

Theoretical pI: Translated: 7.74; Mature: 7.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKTRRWVIILLSLAILVLIGINLADKDDPAAVMVNSNDPTYKSEHTDTVVYSPEGALSY
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEECCCCCHHH
RLIAQHVEYFSDQAVSWFTQPVLTTFDKDKVPTWSIKADKAKLTNDRMLYLYGHVEVNAL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEECCCCEEEEEEEEEEEEEE
VPDAQLRRITTDNAQINLVTQDVTSNDLVTLYGTTFNSSGLKMRGNLRSKNAELIEKVRT
CCCHHHEEEECCCCEEEEEEECCCCCCEEEEEEEEECCCCCEEECCCCCCCHHHHHHHHH
SYEIQNKQTQP
HHEECCCCCCC
>Mature Secondary Structure 
SKTRRWVIILLSLAILVLIGINLADKDDPAAVMVNSNDPTYKSEHTDTVVYSPEGALSY
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEECCCCCHHH
RLIAQHVEYFSDQAVSWFTQPVLTTFDKDKVPTWSIKADKAKLTNDRMLYLYGHVEVNAL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEECCCCEEEEEEEEEEEEEE
VPDAQLRRITTDNAQINLVTQDVTSNDLVTLYGTTFNSSGLKMRGNLRSKNAELIEKVRT
CCCHHHEEEECCCCEEEEEEECCCCCCEEEEEEEEECCCCCEEECCCCCCCHHHHHHHHH
SYEIQNKQTQP
HHEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]