Click here to switch to the map view.

The map label for this gene is ybhD [H]

Identifier: 194735080

GI number: 194735080

Start: 3918268

End: 3919164

Strand: Direct

Name: ybhD [H]

Synonym: SeSA_A4046

Alternate gene names: 194735080

Gene position: 3918268-3919164 (Clockwise)

Preceding gene: 194736491

Following gene: 194735765

Centisome position: 83.21

GC content: 53.51

Gene sequence:

>897_bases
ATGAATTTAACTATCCGGCAATTTCGCGCGTTTCTGGCCGTCGCGGATTTGCGTAGTTTTACCGCCGCCAGCAAATATCT
GTGCATCACGCAGGGCGCCGTTAGCGGTTTAATCAACGAAATGGAAAGCCAGATGGAGGTTTCCCTTTTCGACCGCACTT
CGCACGTGGTGAAGCTGTCGCCCGACGGCGAAAAATTTTTGCCCTCCGCTATGCGGGTGGTTGAAGAGTTTCAACGGGCC
GAAAATTATGCCCGCGACCTGAAAGAGATCAAAAAATCCCTGGTGCGGGTTGTTGGCGCGCCGCTGATCGCCTGTGCCTT
TTTGCCGAAAATTATCCATGCCTTTAAGCGGCAGCACCCGCATACCCATGTACAGCTTATTGATAAGCCCATGTCGCAAT
TACAAAAAAGCATTATGTTGGGAGAAGCGGATTTCGGTATCGGCCCTGAGCGACCGCTGGAACCGGAAATCGACAAACAA
ACGCTGTTCACAACGGAAATCGCCCTGTACTGCCATCCGGACTATCGGCTGCATAAAAAAACGGTTCGCTGGGAAGAGAT
TCAGAGCGAAGAGCTGATCGCCGTTGGCAACGAATCCATTCCGACGATCTCCGCGACCGCTGGCGTGCGCATTAAGCCCA
AAATGACGGTGGAACATATGGCGACCGCCATGTCGCTGGCGGCGCAGTGTGAAGGCGTGGTGATCGCCGGAACCTTTTCC
CGCCATTACGCCAAAAGCTACCAATTAGCGACCTGTTCGCTCACGCCTCCGCTGCGGCGCAATATGAACCTTTATTTCCA
TGCGTGGCGCGCACAAACGCCCGCCACGCAGCGCTTTAGAGATTTTTTATTTAGCTATGTCGATGAACATCATGATGCCC
CGGCCAACCAGCGGTAG

Upstream 100 bases:

>100_bases
TGCGCCGCAGGCAGACCCCCTGTATTTGCGAGTCGTATCAACACGACCTTATCCAGCCTGAGATAAAATCCTCTCTGTAA
AGGGGTAACACAGGTGGCAA

Downstream 100 bases:

>100_bases
GCCGGGGATTAAGGCAGGTTAAATATCGATATTCGCTGCTTTCAGGGCGTTCTCTTCGATAAAGGCACGACGCGGCTCAA
CGGCGTCGCCCATCAGCGTG

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MNLTIRQFRAFLAVADLRSFTAASKYLCITQGAVSGLINEMESQMEVSLFDRTSHVVKLSPDGEKFLPSAMRVVEEFQRA
ENYARDLKEIKKSLVRVVGAPLIACAFLPKIIHAFKRQHPHTHVQLIDKPMSQLQKSIMLGEADFGIGPERPLEPEIDKQ
TLFTTEIALYCHPDYRLHKKTVRWEEIQSEELIAVGNESIPTISATAGVRIKPKMTVEHMATAMSLAAQCEGVVIAGTFS
RHYAKSYQLATCSLTPPLRRNMNLYFHAWRAQTPATQRFRDFLFSYVDEHHDAPANQR

Sequences:

>Translated_298_residues
MNLTIRQFRAFLAVADLRSFTAASKYLCITQGAVSGLINEMESQMEVSLFDRTSHVVKLSPDGEKFLPSAMRVVEEFQRA
ENYARDLKEIKKSLVRVVGAPLIACAFLPKIIHAFKRQHPHTHVQLIDKPMSQLQKSIMLGEADFGIGPERPLEPEIDKQ
TLFTTEIALYCHPDYRLHKKTVRWEEIQSEELIAVGNESIPTISATAGVRIKPKMTVEHMATAMSLAAQCEGVVIAGTFS
RHYAKSYQLATCSLTPPLRRNMNLYFHAWRAQTPATQRFRDFLFSYVDEHHDAPANQR
>Mature_298_residues
MNLTIRQFRAFLAVADLRSFTAASKYLCITQGAVSGLINEMESQMEVSLFDRTSHVVKLSPDGEKFLPSAMRVVEEFQRA
ENYARDLKEIKKSLVRVVGAPLIACAFLPKIIHAFKRQHPHTHVQLIDKPMSQLQKSIMLGEADFGIGPERPLEPEIDKQ
TLFTTEIALYCHPDYRLHKKTVRWEEIQSEELIAVGNESIPTISATAGVRIKPKMTVEHMATAMSLAAQCEGVVIAGTFS
RHYAKSYQLATCSLTPPLRRNMNLYFHAWRAQTPATQRFRDFLFSYVDEHHDAPANQR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=295, Percent_Identity=26.4406779661017, Blast_Score=114, Evalue=8e-27,
Organism=Escherichia coli, GI1788748, Length=296, Percent_Identity=26.3513513513513, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1787601, Length=176, Percent_Identity=28.4090909090909, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87081904, Length=231, Percent_Identity=26.8398268398268, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788887, Length=182, Percent_Identity=29.6703296703297, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI157672245, Length=195, Percent_Identity=26.1538461538462, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1788481, Length=189, Percent_Identity=24.3386243386243, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI48994962, Length=211, Percent_Identity=26.0663507109005, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1786401, Length=175, Percent_Identity=22.8571428571429, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33801; Mature: 33801

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLTIRQFRAFLAVADLRSFTAASKYLCITQGAVSGLINEMESQMEVSLFDRTSHVVKLS
CCCCHHHHHHHHHHHHHHHHHHHHCEEEEEHHHHHHHHHHHHHHHHHHHEECCCCEEEEC
PDGEKFLPSAMRVVEEFQRAENYARDLKEIKKSLVRVVGAPLIACAFLPKIIHAFKRQHP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
HTHVQLIDKPMSQLQKSIMLGEADFGIGPERPLEPEIDKQTLFTTEIALYCHPDYRLHKK
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHEEEEEEEEEECCCCHHHHH
TVRWEEIQSEELIAVGNESIPTISATAGVRIKPKMTVEHMATAMSLAAQCEGVVIAGTFS
HHHHHHHCCCCEEEECCCCCCEEECCCCEEECCCHHHHHHHHHHHHHHHCCCEEEEECHH
RHYAKSYQLATCSLTPPLRRNMNLYFHAWRAQTPATQRFRDFLFSYVDEHHDAPANQR
HHHHHCEEEEEECCCCHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNLTIRQFRAFLAVADLRSFTAASKYLCITQGAVSGLINEMESQMEVSLFDRTSHVVKLS
CCCCHHHHHHHHHHHHHHHHHHHHCEEEEEHHHHHHHHHHHHHHHHHHHEECCCCEEEEC
PDGEKFLPSAMRVVEEFQRAENYARDLKEIKKSLVRVVGAPLIACAFLPKIIHAFKRQHP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
HTHVQLIDKPMSQLQKSIMLGEADFGIGPERPLEPEIDKQTLFTTEIALYCHPDYRLHKK
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHEEEEEEEEEECCCCHHHHH
TVRWEEIQSEELIAVGNESIPTISATAGVRIKPKMTVEHMATAMSLAAQCEGVVIAGTFS
HHHHHHHCCCCEEEECCCCCCEEECCCCEEECCCHHHHHHHHHHHHHHHCCCEEEEECHH
RHYAKSYQLATCSLTPPLRRNMNLYFHAWRAQTPATQRFRDFLFSYVDEHHDAPANQR
HHHHHCEEEEEECCCCHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]