Click here to switch to the map view.

The map label for this gene is ygdH [H]

Identifier: 194734921

GI number: 194734921

Start: 3023119

End: 3024483

Strand: Direct

Name: ygdH [H]

Synonym: SeSA_A3129

Alternate gene names: 194734921

Gene position: 3023119-3024483 (Clockwise)

Preceding gene: 194735727

Following gene: 194736684

Centisome position: 64.2

GC content: 55.16

Gene sequence:

>1365_bases
TTGATTACACATATTAGCCCGCTTGGCTCAATGGATATGTTGTCGCAACTGGAAGTGGACATGCTGAAACGCACGGCCAG
TAGCGACCTGTATCAACTGTTTCGTAACTGTTCACTTGCCGTTCTTAACTCCGGCAGCCTGACCGACAACAGCAAAGAGC
TGCTGTCCCGCTTTGAAAATTTCGATATTAACGTGCTGCGCCGCGAGCGCGGCGTGAAGCTGGAATTGATTAATCCGCCT
GAAGACGCCTTTGTTGACGGGCGGATTATTCGTGCGCTACAGGCTAACCTGTTCGCGGTGCTGCGCGACATTCTCTTTGT
GAATGGGCAGATCCATAATGCCGGTCGTTTCCAGCATCTGGATCTTGAAAGCTCAACACATATCACCAATCTGGTGTTCT
CCATTTTGCGCAACGCCCGGGCGCTGCACGTCGGCGAAGCGCCAAACATGGTGGTATGCTGGGGCGGCCACTCAATTAAC
GAAAACGAGTACCTGTATGCCCGTCGCGTCGGCACACAGTTGGGATTACGCGAGCTGAACATCTGCACCGGCTGCGGCCC
TGGGGCGATGGAAGCCCCCATGAAGGGCGCGGCGGTCGGTCACGCGCAACAGCGTTATAAAGACAGCCGCTTTATCGGCA
TGACTGAACCTTCCATTATTGCGGCTGAACCGCCTAACCCGCTGGTGAACGAACTGATCATCATGCCGGATATCGAAAAA
CGCCTGGAAGCGTTCGTCCGTATCGCACACGGAATCATCATCTTCCCGGGCGGCGTGGGTACGGCGGAAGAGCTGCTTTA
TTTGCTGGGGATTCTGATGAATCCAGCCAATAAAAATCAGGTGCTGCCGCTGATCCTGACCGGACCAAAAGAGAGCGCCG
ATTACTTCCGCGTGCTGGATGAGTTTATTACCCATACGCTGGGCGAAGCGGCCCGCCGTCATTACCGCATCATCATTGAC
GATGCGGCGGAGGTAGCGCGGCTGATGAAGAAAGCGATGCCGCAAGTGAAAGAGAATCGCCGCGATACCGGCGACGCCTA
TAGTTTTAACTGGTCGATGCGTATTGCACCGGATCTGCAGGTGCCGTTTGAGCCGTCGCATGAGAATATGGCCAACCTGA
AACTGTACCCGGATCAGCCGGTTGAAATTCTGGCGGCGGATCTGCGGCGCGCCTTCTCCGGTATTGTCGCGGGGAACGTG
AAGGAGGTCGGGATACGCGCCATTGAAGCTAATGGTCCGTATAAAATCCACGGCGATCGAGAGATGATGCGTCGCATGGA
CGATCTGCTGCAGGGATTCGTCGCGCAGCATCGTATGAAATTGCCAGGTTCCGCCTACATCCCCTGTTACGAGATCTGCG
CTTAG

Upstream 100 bases:

>100_bases
TTTTGCGTGCCGGATTGCGCATGTAAGGTTGTGAAAGGTCATCAGCCAGGGCTATTGTAATCAACAGGGAATGGCGTGTT
GCGTCCCATAAGGAGTTTAC

Downstream 100 bases:

>100_bases
CGCTTATGCCCGGTTGCCGCCAGCAGCCGGGCGCTTCCCCCATTCCTTTCATTGCGGTATGGCGATTAACGTATGCCTTC
ATTTTTTATGATGATCATCA

Product: lysine decarboxylase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 454; Mature: 454

Protein sequence:

>454_residues
MITHISPLGSMDMLSQLEVDMLKRTASSDLYQLFRNCSLAVLNSGSLTDNSKELLSRFENFDINVLRRERGVKLELINPP
EDAFVDGRIIRALQANLFAVLRDILFVNGQIHNAGRFQHLDLESSTHITNLVFSILRNARALHVGEAPNMVVCWGGHSIN
ENEYLYARRVGTQLGLRELNICTGCGPGAMEAPMKGAAVGHAQQRYKDSRFIGMTEPSIIAAEPPNPLVNELIIMPDIEK
RLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMNPANKNQVLPLILTGPKESADYFRVLDEFITHTLGEAARRHYRIIID
DAAEVARLMKKAMPQVKENRRDTGDAYSFNWSMRIAPDLQVPFEPSHENMANLKLYPDQPVEILAADLRRAFSGIVAGNV
KEVGIRAIEANGPYKIHGDREMMRRMDDLLQGFVAQHRMKLPGSAYIPCYEICA

Sequences:

>Translated_454_residues
MITHISPLGSMDMLSQLEVDMLKRTASSDLYQLFRNCSLAVLNSGSLTDNSKELLSRFENFDINVLRRERGVKLELINPP
EDAFVDGRIIRALQANLFAVLRDILFVNGQIHNAGRFQHLDLESSTHITNLVFSILRNARALHVGEAPNMVVCWGGHSIN
ENEYLYARRVGTQLGLRELNICTGCGPGAMEAPMKGAAVGHAQQRYKDSRFIGMTEPSIIAAEPPNPLVNELIIMPDIEK
RLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMNPANKNQVLPLILTGPKESADYFRVLDEFITHTLGEAARRHYRIIID
DAAEVARLMKKAMPQVKENRRDTGDAYSFNWSMRIAPDLQVPFEPSHENMANLKLYPDQPVEILAADLRRAFSGIVAGNV
KEVGIRAIEANGPYKIHGDREMMRRMDDLLQGFVAQHRMKLPGSAYIPCYEICA
>Mature_454_residues
MITHISPLGSMDMLSQLEVDMLKRTASSDLYQLFRNCSLAVLNSGSLTDNSKELLSRFENFDINVLRRERGVKLELINPP
EDAFVDGRIIRALQANLFAVLRDILFVNGQIHNAGRFQHLDLESSTHITNLVFSILRNARALHVGEAPNMVVCWGGHSIN
ENEYLYARRVGTQLGLRELNICTGCGPGAMEAPMKGAAVGHAQQRYKDSRFIGMTEPSIIAAEPPNPLVNELIIMPDIEK
RLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMNPANKNQVLPLILTGPKESADYFRVLDEFITHTLGEAARRHYRIIID
DAAEVARLMKKAMPQVKENRRDTGDAYSFNWSMRIAPDLQVPFEPSHENMANLKLYPDQPVEILAADLRRAFSGIVAGNV
KEVGIRAIEANGPYKIHGDREMMRRMDDLLQGFVAQHRMKLPGSAYIPCYEICA

Specific function: Unknown

COG id: COG1611

COG function: function code R; Predicted Rossmann fold nucleotide-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LOG family [H]

Homologues:

Organism=Escherichia coli, GI1789159, Length=454, Percent_Identity=94.273127753304, Blast_Score=884, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021826
- InterPro:   IPR005269 [H]

Pfam domain/function: PF11892 DUF3412; PF03641 Lysine_decarbox [H]

EC number: NA

Molecular weight: Translated: 50754; Mature: 50754

Theoretical pI: Translated: 6.70; Mature: 6.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITHISPLGSMDMLSQLEVDMLKRTASSDLYQLFRNCSLAVLNSGSLTDNSKELLSRFEN
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHC
FDINVLRRERGVKLELINPPEDAFVDGRIIRALQANLFAVLRDILFVNGQIHNAGRFQHL
CCEEEEECCCCCEEEEECCCCCHHHCHHHHHHHHHHHHHHHHHHHHHCCEEECCCCEEEE
DLESSTHITNLVFSILRNARALHVGEAPNMVVCWGGHSINENEYLYARRVGTQLGLRELN
CCCCCHHHHHHHHHHHHCCCEEEECCCCCEEEEECCCCCCCCCEEEHHHHHHHHCHHHEE
ICTGCGPGAMEAPMKGAAVGHAQQRYKDSRFIGMTEPSIIAAEPPNPLVNELIIMPDIEK
EECCCCCCCCCCCCCCCHHCHHHHHHCCCCEEECCCCCEEEECCCCHHHHHEEECCCHHH
RLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMNPANKNQVLPLILTGPKESADYFRVLD
HHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHH
EFITHTLGEAARRHYRIIIDDAAEVARLMKKAMPQVKENRRDTGDAYSFNWSMRIAPDLQ
HHHHHHHHHHHHHCEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCC
VPFEPSHENMANLKLYPDQPVEILAADLRRAFSGIVAGNVKEVGIRAIEANGPYKIHGDR
CCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHCEEEEECCCCEEECCCH
EMMRRMDDLLQGFVAQHRMKLPGSAYIPCYEICA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCC
>Mature Secondary Structure
MITHISPLGSMDMLSQLEVDMLKRTASSDLYQLFRNCSLAVLNSGSLTDNSKELLSRFEN
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHC
FDINVLRRERGVKLELINPPEDAFVDGRIIRALQANLFAVLRDILFVNGQIHNAGRFQHL
CCEEEEECCCCCEEEEECCCCCHHHCHHHHHHHHHHHHHHHHHHHHHCCEEECCCCEEEE
DLESSTHITNLVFSILRNARALHVGEAPNMVVCWGGHSINENEYLYARRVGTQLGLRELN
CCCCCHHHHHHHHHHHHCCCEEEECCCCCEEEEECCCCCCCCCEEEHHHHHHHHCHHHEE
ICTGCGPGAMEAPMKGAAVGHAQQRYKDSRFIGMTEPSIIAAEPPNPLVNELIIMPDIEK
EECCCCCCCCCCCCCCCHHCHHHHHHCCCCEEECCCCCEEEECCCCHHHHHEEECCCHHH
RLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMNPANKNQVLPLILTGPKESADYFRVLD
HHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHH
EFITHTLGEAARRHYRIIIDDAAEVARLMKKAMPQVKENRRDTGDAYSFNWSMRIAPDLQ
HHHHHHHHHHHHHCEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCC
VPFEPSHENMANLKLYPDQPVEILAADLRRAFSGIVAGNVKEVGIRAIEANGPYKIHGDR
CCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHCEEEEECCCCEEECCCH
EMMRRMDDLLQGFVAQHRMKLPGSAYIPCYEICA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]