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The map label for this gene is rarA [H]

Identifier: 194734760

GI number: 194734760

Start: 1050700

End: 1052043

Strand: Direct

Name: rarA [H]

Synonym: SeSA_A1076

Alternate gene names: 194734760

Gene position: 1050700-1052043 (Clockwise)

Preceding gene: 194735424

Following gene: 194735850

Centisome position: 22.31

GC content: 56.92

Gene sequence:

>1344_bases
GTGAGCAATCTGTCGCTCGATTTTTCTGATAATACGTTTCAACCGCTGGCCGCGCGAATGCGGCCGGAAAATTTAGCGCA
GTATATCGGCCAGCAGCATTTGCTGGCCGCAGGTAAGCCGTTGCCTCGCGCTATTGAGGCCGGGCATCTGCACTCCATGA
TTTTATGGGGGCCGCCAGGGACGGGGAAAACCACGCTCGCTGAAGTGATCGCCCGCTACGCCAGCGCCGATGTCGAGCGT
ATTTCCGCCGTCACTTCTGGGGTAAAAGAGATTCGCGAAGCTATCGAGCGCGCCCGCCAGAATCGTAATGCCGGTCGCCG
TACCATCCTGTTTGTCGATGAAGTGCATCGCTTTAACAAAAGCCAGCAGGACGCCTTTTTACCGCATATCGAAGATGGCA
CTATCACCTTTATCGGCGCGACCACGGAAAATCCCTCTTTTGAGCTGAACTCGGCGCTCTTGTCGCGAGCGCGGGTCTAT
TTGCTGAAATCGTTGACCACTGACGATATTGAGCAAGTACTGGACCAGGCGATGCAGGACAAAACGCGTGGTTACGGCGA
TCAGGATATCGTGTTACCGGATGAGACACGGCGAGCGATTGCTGAGCTGGTCAATGGCGACGCGCGGCGCGCCTTAAATA
CGCTGGAAATGATGGCCGATATGGCGGAGGCGGATGATAGCGGCAAACGCGTTTTATTGCCCTCCTTGTTGACCGAGATC
GCCGGCGAGCGCAGCGCGCGTTTTGATAACAAAGGCGATCGCTTCTACGATCTTATTTCCGCCTTACATAAATCAGTGCG
CGGCAGCGCGCCGGATGCCGCCCTCTATTGGTATGCCCGTATCATTACCGCGGGAGGCGATCCGCTGTACGTGGCGCGTC
GCTGCCTGGCGATTGCCTCGGAAGATGTGGGTAATGCCGATCCGCGCGCGATGCAGGTCGCTATTGCCGCGTGGGATTGT
TTCACCCGCGTTGGTCCGGCTGAAGGCGAAAGGGCGATCGCGCAGGCTATCGTTTATCTCGCCTGCGCGCCGAAGAGCAA
CGCCGTCTATACCGCCTTTAAGGCTGCGCTGGCCGACGCGCGCGAACGTCCTGATTATGACGTTCCTGTCCATCTGCGTA
ATGCGCCAACCAAACTGATGAAAGAGATGGGTTATGGCCAGGAGTACCGCTATGCCCACGATGAGCCCAATGCCTATGCT
GCGGGTGAAGTGTACTTCCCGCCGGAAATCGCGCAAACGCGCTATTATCATCCGACAAATCGTGGTCTGGAAGGCAAGAT
TGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCAAAATAGCCCCACAAAACGCTACCGCTAG

Upstream 100 bases:

>100_bases
GCTAAAATCCCAGCAAAACGGCGCTGTTGATCCGTCAAAATTTACGTTTACTCCGCCGCAAGGGGTAACGATAGACGACC
AACGTAAGTAGAGGCGATGA

Downstream 100 bases:

>100_bases
TGTAAACGTTGCGGTAAGGTTATCTCTAAATATGATGCTCCAGGTATCATGGCGTTGATGATGAATCTCGTTATGCCTGA
TAGCACGTTGCTTATGAGGT

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 447; Mature: 446

Protein sequence:

>447_residues
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYASADVER
ISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVY
LLKSLTTDDIEQVLDQAMQDKTRGYGDQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEADDSGKRVLLPSLLTEI
AGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDC
FTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYA
AGEVYFPPEIAQTRYYHPTNRGLEGKIGEKLAWLAEQDQNSPTKRYR

Sequences:

>Translated_447_residues
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYASADVER
ISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVY
LLKSLTTDDIEQVLDQAMQDKTRGYGDQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEADDSGKRVLLPSLLTEI
AGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDC
FTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYA
AGEVYFPPEIAQTRYYHPTNRGLEGKIGEKLAWLAEQDQNSPTKRYR
>Mature_446_residues
SNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYASADVERI
SAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYL
LKSLTTDDIEQVLDQAMQDKTRGYGDQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEADDSGKRVLLPSLLTEIA
GERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCF
TRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYAA
GEVYFPPEIAQTRYYHPTNRGLEGKIGEKLAWLAEQDQNSPTKRYR

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=440, Percent_Identity=40.9090909090909, Blast_Score=302, Evalue=3e-82,
Organism=Homo sapiens, GI18426904, Length=440, Percent_Identity=36.3636363636364, Blast_Score=243, Evalue=3e-64,
Organism=Escherichia coli, GI1787119, Length=447, Percent_Identity=97.3154362416107, Blast_Score=895, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6324111, Length=448, Percent_Identity=40.625, Blast_Score=306, Evalue=6e-84,
Organism=Saccharomyces cerevisiae, GI6324039, Length=211, Percent_Identity=27.0142180094787, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 49589; Mature: 49458

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPG
CCCCEECCCCCCHHHHHHHCCHHHHHHHHCHHHHHHCCCCCCHHHHCCCCCEEEEECCCC
TGKTTLAEVIARYASADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHCCC
SQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLTTDDIEQVLDQAMQD
CCCCCCCCEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
KTRGYGDQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEADDSGKRVLLPSLLTEI
HHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHH
AGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIAS
HCCHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
EDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADA
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEECCCCCCHHHHHHHHHHHH
RERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYAAGEVYFPPEIAQTRYYHPTN
HHCCCCCCCEEECCCHHHHHHHCCCCCCCCCCCCCCCCEECCEEECCCHHHHCCCCCCCC
RGLEGKIGEKLAWLAEQDQNSPTKRYR
CCCCCCHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPG
CCCEECCCCCCHHHHHHHCCHHHHHHHHCHHHHHHCCCCCCHHHHCCCCCEEEEECCCC
TGKTTLAEVIARYASADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHCCC
SQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLTTDDIEQVLDQAMQD
CCCCCCCCEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
KTRGYGDQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEADDSGKRVLLPSLLTEI
HHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHH
AGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIAS
HCCHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
EDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADA
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEECCCCCCHHHHHHHHHHHH
RERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYAAGEVYFPPEIAQTRYYHPTN
HHCCCCCCCEEECCCHHHHHHHCCCCCCCCCCCCCCCCEECCEEECCCHHHHCCCCCCCC
RGLEGKIGEKLAWLAEQDQNSPTKRYR
CCCCCCHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]