Click here to switch to the map view.

The map label for this gene is insF1 [H]

Identifier: 194734545

GI number: 194734545

Start: 2625377

End: 2625733

Strand: Reverse

Name: insF1 [H]

Synonym: SeSA_A2743

Alternate gene names: 194734545

Gene position: 2625733-2625377 (Counterclockwise)

Preceding gene: 194735323

Following gene: 194736785

Centisome position: 55.76

GC content: 48.74

Gene sequence:

>357_bases
TTGTATCTTGCCGTGGTCGTTGATTTGTTCTCGCGCAAAGTTATCGGTTGGTCAATGCAACCACGAATGACAAAAGACAT
TGTTCTGAATGCGCTTCTGATGGCCGTGTGGCGACGCCATCCCCAAAAACAGGTGCTGGTTCATTCTGATCCGGGTAGTC
AGTACACCCGCTATGAATGGCTGAAATCGCACGGACTGGAGGGCAGTATGAGCCGTCGTGGCAACTGTCATGACAATGCG
GTTGCAGAAAGCTTTTTCCAGCTACTGAAGCGTGAACGGATAAAGAAAAAGATCTACCAACGACTCAGAAGTGCCCTGGT
TATCCGTGGCTATACAACCCAAATAAGGGGCATTTAA

Upstream 100 bases:

>100_bases
TTTTGCAGAGGGTTTTTATTTATGTGCATAGATGAGTTTTCTGTGTAGTGCACAGCTTCTGGCGGTAAATTTGACGTAAT
TACGAACCCACGAAGGTTGG

Downstream 100 bases:

>100_bases
AATATAGTAACTTTATTCTTCAACTATATAACCAACGTCCAGCTTTAGCACTTTCAACGAGCATACCAACCGTTAGTGGC
TTACGCGGATCAGTCTCTTT

Product: putative transposase B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 118; Mature: 118

Protein sequence:

>118_residues
MYLAVVVDLFSRKVIGWSMQPRMTKDIVLNALLMAVWRRHPQKQVLVHSDPGSQYTRYEWLKSHGLEGSMSRRGNCHDNA
VAESFFQLLKRERIKKKIYQRLRSALVIRGYTTQIRGI

Sequences:

>Translated_118_residues
MYLAVVVDLFSRKVIGWSMQPRMTKDIVLNALLMAVWRRHPQKQVLVHSDPGSQYTRYEWLKSHGLEGSMSRRGNCHDNA
VAESFFQLLKRERIKKKIYQRLRSALVIRGYTTQIRGI
>Mature_118_residues
MYLAVVVDLFSRKVIGWSMQPRMTKDIVLNALLMAVWRRHPQKQVLVHSDPGSQYTRYEWLKSHGLEGSMSRRGNCHDNA
VAESFFQLLKRERIKKKIYQRLRSALVIRGYTTQIRGI

Specific function: Involved in the transposition of the insertion sequence IS3 [H]

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Homo sapiens, GI310129419, Length=98, Percent_Identity=39.7959183673469, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1788405, Length=97, Percent_Identity=55.6701030927835, Blast_Score=110, Evalue=2e-26,
Organism=Escherichia coli, GI1787263, Length=97, Percent_Identity=55.6701030927835, Blast_Score=110, Evalue=2e-26,
Organism=Escherichia coli, GI1786753, Length=97, Percent_Identity=55.6701030927835, Blast_Score=110, Evalue=2e-26,
Organism=Escherichia coli, GI1786570, Length=97, Percent_Identity=55.6701030927835, Blast_Score=110, Evalue=2e-26,
Organism=Escherichia coli, GI1786490, Length=97, Percent_Identity=55.6701030927835, Blast_Score=110, Evalue=2e-26,
Organism=Escherichia coli, GI1789981, Length=95, Percent_Identity=46.3157894736842, Blast_Score=84, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 13861; Mature: 13861

Theoretical pI: Translated: 11.20; Mature: 11.20

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLAVVVDLFSRKVIGWSMQPRMTKDIVLNALLMAVWRRHPQKQVLVHSDPGSQYTRYEW
CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHH
LKSHGLEGSMSRRGNCHDNAVAESFFQLLKRERIKKKIYQRLRSALVIRGYTTQIRGI
HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCC
>Mature Secondary Structure
MYLAVVVDLFSRKVIGWSMQPRMTKDIVLNALLMAVWRRHPQKQVLVHSDPGSQYTRYEW
CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHH
LKSHGLEGSMSRRGNCHDNAVAESFFQLLKRERIKKKIYQRLRSALVIRGYTTQIRGI
HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2987844; 9278503 [H]