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The map label for this gene is ydcF [H]

Identifier: 194734172

GI number: 194734172

Start: 1701210

End: 1702010

Strand: Reverse

Name: ydcF [H]

Synonym: SeSA_A1760

Alternate gene names: 194734172

Gene position: 1702010-1701210 (Counterclockwise)

Preceding gene: 194734661

Following gene: 194735628

Centisome position: 36.14

GC content: 54.06

Gene sequence:

>801_bases
ATGAATACAACGCCATTTCCGGCGCTCTCTGCGGAAACATTGCTGGCGGTGAATACCGTCGGACAGTGGCTGGCGCAAAA
TGATTTTTCCGGCGAACAACCTTATTCGTCGGATTGCGTCGTCCTGGCGGGCAATGCGGTGATCCCCACTATCGACGCGG
CCTGTCGCATCGCCAAAGCGCAAGGCGTTCCTTTACTGATTAGCGGCGGTATAGGTCATTCAACGCCGTTTTTGTACGCC
GTGATTGCCCGGCATCCGCGCTACCACACTATTCGCACAACCGGACGCGCTGAAGCCGCGATCCTCGCGGATATCGCGAA
CCAGTTCTGGCATATTCCGGCTGAGAAAATTTGGCTGGAAGATCGGTCAACTAATTGCGGCGAAAATGCCCGTTTCTCCT
GCGCACTGATCCGTCAGGCGAAAGAAAACATTAACACGGCTATTGTTGTGCAAGACCCCACCATGCAGCGGCGCACTATC
GCGGCGTTTCGGCGCGTGACAAACGACGACACCGATGCGCCACGCTGGCTGAGTTTTCCTGGCTTTGTTCCGGTACTGCG
CCACCTTAATGACGGTACACGTTTTGCCAATGTTGAAGAGGGCATCTGGACGGTGGAGCGTTATCTGTCTCTGATTGCCG
GCGAACTGCCACGTTTGCGTGACGATGAAACAGGGTATGGACCGCGTGGTAAAGATTTTATCATTCACGTTGATATCCCA
CGTGATATTGAAAACGCATGGCAGGTATTGCAGGCAGATACTACGCTGCGCAGTGCGTTAGAACAGAGAGCTTTACGCTA
A

Upstream 100 bases:

>100_bases
GCGTATTTTACAGGCCATGGATCAGATTACGGCCTAAAAAGCCAGGCGACGACGTCTTTCAAAGAGATCCGGTACAAGTT
CGGAACAAAAAGGAGGAATT

Downstream 100 bases:

>100_bases
AAATCGCCCGTTTGCGAGGGTGAACGGGCAAGTGCGACCACCATCTCATAAATTTGATGAATTATTTATAAAAGCTGGTT
ATGTTGTCGCTTTACGGTTT

Product: protein YdcF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MNTTPFPALSAETLLAVNTVGQWLAQNDFSGEQPYSSDCVVLAGNAVIPTIDAACRIAKAQGVPLLISGGIGHSTPFLYA
VIARHPRYHTIRTTGRAEAAILADIANQFWHIPAEKIWLEDRSTNCGENARFSCALIRQAKENINTAIVVQDPTMQRRTI
AAFRRVTNDDTDAPRWLSFPGFVPVLRHLNDGTRFANVEEGIWTVERYLSLIAGELPRLRDDETGYGPRGKDFIIHVDIP
RDIENAWQVLQADTTLRSALEQRALR

Sequences:

>Translated_266_residues
MNTTPFPALSAETLLAVNTVGQWLAQNDFSGEQPYSSDCVVLAGNAVIPTIDAACRIAKAQGVPLLISGGIGHSTPFLYA
VIARHPRYHTIRTTGRAEAAILADIANQFWHIPAEKIWLEDRSTNCGENARFSCALIRQAKENINTAIVVQDPTMQRRTI
AAFRRVTNDDTDAPRWLSFPGFVPVLRHLNDGTRFANVEEGIWTVERYLSLIAGELPRLRDDETGYGPRGKDFIIHVDIP
RDIENAWQVLQADTTLRSALEQRALR
>Mature_266_residues
MNTTPFPALSAETLLAVNTVGQWLAQNDFSGEQPYSSDCVVLAGNAVIPTIDAACRIAKAQGVPLLISGGIGHSTPFLYA
VIARHPRYHTIRTTGRAEAAILADIANQFWHIPAEKIWLEDRSTNCGENARFSCALIRQAKENINTAIVVQDPTMQRRTI
AAFRRVTNDDTDAPRWLSFPGFVPVLRHLNDGTRFANVEEGIWTVERYLSLIAGELPRLRDDETGYGPRGKDFIIHVDIP
RDIENAWQVLQADTTLRSALEQRALR

Specific function: Binds S-adenosyl-L-methionine (AdoMet) [H]

COG id: COG1434

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To S.coelicolor SCO4629 [H]

Homologues:

Organism=Escherichia coli, GI1787683, Length=266, Percent_Identity=69.5488721804511, Blast_Score=399, Evalue=1e-112,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003848
- InterPro:   IPR014729 [H]

Pfam domain/function: PF02698 DUF218 [H]

EC number: NA

Molecular weight: Translated: 29573; Mature: 29573

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTTPFPALSAETLLAVNTVGQWLAQNDFSGEQPYSSDCVVLAGNAVIPTIDAACRIAKA
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCEECCCHHHHHHHHHC
QGVPLLISGGIGHSTPFLYAVIARHPRYHTIRTTGRAEAAILADIANQFWHIPAEKIWLE
CCCCEEEECCCCCCCHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCHHHEEEE
DRSTNCGENARFSCALIRQAKENINTAIVVQDPTMQRRTIAAFRRVTNDDTDAPRWLSFP
CCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCEECCC
GFVPVLRHLNDGTRFANVEEGIWTVERYLSLIAGELPRLRDDETGYGPRGKDFIIHVDIP
CHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECC
RDIENAWQVLQADTTLRSALEQRALR
CCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNTTPFPALSAETLLAVNTVGQWLAQNDFSGEQPYSSDCVVLAGNAVIPTIDAACRIAKA
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCEECCCHHHHHHHHHC
QGVPLLISGGIGHSTPFLYAVIARHPRYHTIRTTGRAEAAILADIANQFWHIPAEKIWLE
CCCCEEEECCCCCCCHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCHHHEEEE
DRSTNCGENARFSCALIRQAKENINTAIVVQDPTMQRRTIAAFRRVTNDDTDAPRWLSFP
CCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCEECCC
GFVPVLRHLNDGTRFANVEEGIWTVERYLSLIAGELPRLRDDETGYGPRGKDFIIHVDIP
CHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECC
RDIENAWQVLQADTTLRSALEQRALR
CCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 10493123 [H]