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The map label for this gene is hypD [H]

Identifier: 194334446

GI number: 194334446

Start: 1785950

End: 1787044

Strand: Reverse

Name: hypD [H]

Synonym: Paes_1641

Alternate gene names: 194334446

Gene position: 1787044-1785950 (Counterclockwise)

Preceding gene: 194334447

Following gene: 194334445

Centisome position: 71.11

GC content: 54.98

Gene sequence:

>1095_bases
GTGAAATATATCGATGAGTACCGTAATCCGGATCTTGTTCGGCTTCTGCTCGAACAGATCGACAACGCGGTAAGCCGGCC
ATGGACGATTATGGAAATCTGCGGAGGGCAGACCCATGCAATTGTACGGCACGGGCTTGATCAGCTTCTTCCTTCATCGA
TTCGCCTTGTTCATGGTCCAGGGTGCCCGGTTTGTGTTACTCCTCTTGAGATGATTGACCGGGCCCATGCAATAGCCGCT
ATGCCCGGTGTTATTTTTACAACGTTTGGCGATATGCTTCGTGTGCCGGGCAGTCATCAGGACTTTTTTTCCGTACGCAG
CCGGGGCGCCGATGTGCGTTTTGTTTTTTCGCCCCTTGAGGCGCTTCAGATTGCGCGAGATAATCCCCGGCATGAAGTGG
TTTTTCTTGCGGTCGGCTTTGAAACGACAGCTCCGGGCAATGCTATGGCCATTAAACAGGCTGCAACGGAGGGGCTGGGG
AATTTCAGTGCGTTGTCGAGCCAGGTGCTTGTACCTCCGGCGATGCGTGCTATTCTCTCTTCTCCCGATAACCTCGTCCA
GGGCTTTCTTGCGGCCGGCCATGTGTGTACGATAACCGGGCTTTGCGACTATTTCCCTGTTGCTGAAACATATGGTGTTC
CGATTGTTCCCGCGGGGTTCGAACCTGTCGATCTCCTGAACGCTGTTTTGAAGGTTGTCGAGATGCTTGAAGCCGGTGAG
ACGGGTGTTGTCAATGCCTATGAGCGCGTGGTGAGCCGGGATGGCAATGCCGGGGCGTTACGGGTGATGGACGACGTGTT
TGAAATTGCCGACCGGACGTGGCGGGGGATTGGCGTTATTGCCCGGAGCGGTTTGAGGATCCGCGAAAAATATGCTGCTT
TTGATGCTGAACGCAAGTTTGATGTCGGTCATATCGAACCGAAGGAGTCTTCTCTTTGCATGAGCGGAGATGTTCTCAGG
GGTATCCTGCAGCCGGAAGCGTGCCCTGCATTCGGCAAGCAATGTACGCCCCTTTCTCCCCTTGGTGCCCCGATGGTATC
GGGAGAGGGCGCTTGTGCGGCATACTATCGATATCAGCGGGCCTGGGGAGCCTGA

Upstream 100 bases:

>100_bases
GAGGCTGAAGAGCGGTCGGCAAGAGAGCGGCGGTGAGCCATTTTCTGAATGGTTTTATAGCGGGCGGATTTGATACGAGA
ACTTTTTCCATACTACTACT

Downstream 100 bases:

>100_bases
TTATTCAACATTTACCACGCACCAATTATGCAGTTTGAATGTCCTTTGCCTCAAGCGGATCATGATCGTGTTCAGATCGC
TCATGGCGCTGGCGGGAGAT

Product: hydrogenase expression/formation protein HypD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 364; Mature: 364

Protein sequence:

>364_residues
MKYIDEYRNPDLVRLLLEQIDNAVSRPWTIMEICGGQTHAIVRHGLDQLLPSSIRLVHGPGCPVCVTPLEMIDRAHAIAA
MPGVIFTTFGDMLRVPGSHQDFFSVRSRGADVRFVFSPLEALQIARDNPRHEVVFLAVGFETTAPGNAMAIKQAATEGLG
NFSALSSQVLVPPAMRAILSSPDNLVQGFLAAGHVCTITGLCDYFPVAETYGVPIVPAGFEPVDLLNAVLKVVEMLEAGE
TGVVNAYERVVSRDGNAGALRVMDDVFEIADRTWRGIGVIARSGLRIREKYAAFDAERKFDVGHIEPKESSLCMSGDVLR
GILQPEACPAFGKQCTPLSPLGAPMVSGEGACAAYYRYQRAWGA

Sequences:

>Translated_364_residues
MKYIDEYRNPDLVRLLLEQIDNAVSRPWTIMEICGGQTHAIVRHGLDQLLPSSIRLVHGPGCPVCVTPLEMIDRAHAIAA
MPGVIFTTFGDMLRVPGSHQDFFSVRSRGADVRFVFSPLEALQIARDNPRHEVVFLAVGFETTAPGNAMAIKQAATEGLG
NFSALSSQVLVPPAMRAILSSPDNLVQGFLAAGHVCTITGLCDYFPVAETYGVPIVPAGFEPVDLLNAVLKVVEMLEAGE
TGVVNAYERVVSRDGNAGALRVMDDVFEIADRTWRGIGVIARSGLRIREKYAAFDAERKFDVGHIEPKESSLCMSGDVLR
GILQPEACPAFGKQCTPLSPLGAPMVSGEGACAAYYRYQRAWGA
>Mature_364_residues
MKYIDEYRNPDLVRLLLEQIDNAVSRPWTIMEICGGQTHAIVRHGLDQLLPSSIRLVHGPGCPVCVTPLEMIDRAHAIAA
MPGVIFTTFGDMLRVPGSHQDFFSVRSRGADVRFVFSPLEALQIARDNPRHEVVFLAVGFETTAPGNAMAIKQAATEGLG
NFSALSSQVLVPPAMRAILSSPDNLVQGFLAAGHVCTITGLCDYFPVAETYGVPIVPAGFEPVDLLNAVLKVVEMLEAGE
TGVVNAYERVVSRDGNAGALRVMDDVFEIADRTWRGIGVIARSGLRIREKYAAFDAERKFDVGHIEPKESSLCMSGDVLR
GILQPEACPAFGKQCTPLSPLGAPMVSGEGACAAYYRYQRAWGA

Specific function: Required For The Formation Of All Three Hydrogenase Isoenzymes. [C]

COG id: COG0409

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypD family [H]

Homologues:

Organism=Escherichia coli, GI1789084, Length=373, Percent_Identity=43.9678284182306, Blast_Score=324, Evalue=6e-90,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002780 [H]

Pfam domain/function: PF01924 HypD [H]

EC number: NA

Molecular weight: Translated: 39373; Mature: 39373

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYIDEYRNPDLVRLLLEQIDNAVSRPWTIMEICGGQTHAIVRHGLDQLLPSSIRLVHGP
CCCHHHHCCCHHHHHHHHHHHHHHHCCEEEEHHCCCCHHHHHHHHHHHHCCHHEEEEECC
GCPVCVTPLEMIDRAHAIAAMPGVIFTTFGDMLRVPGSHQDFFSVRSRGADVRFVFSPLE
CCCEEECHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEEECHHH
ALQIARDNPRHEVVFLAVGFETTAPGNAMAIKQAATEGLGNFSALSSQVLVPPAMRAILS
HHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHC
SPDNLVQGFLAAGHVCTITGLCDYFPVAETYGVPIVPAGFEPVDLLNAVLKVVEMLEAGE
CCHHHHHHHHHCCCCEEEHHHHHHCCCHHHCCCCEEECCCCHHHHHHHHHHHHHHHHCCC
TGVVNAYERVVSRDGNAGALRVMDDVFEIADRTWRGIGVIARSGLRIREKYAAFDAERKF
CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC
DVGHIEPKESSLCMSGDVLRGILQPEACPAFGKQCTPLSPLGAPMVSGEGACAAYYRYQR
CCCCCCCCCCCEECCHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
AWGA
HCCC
>Mature Secondary Structure
MKYIDEYRNPDLVRLLLEQIDNAVSRPWTIMEICGGQTHAIVRHGLDQLLPSSIRLVHGP
CCCHHHHCCCHHHHHHHHHHHHHHHCCEEEEHHCCCCHHHHHHHHHHHHCCHHEEEEECC
GCPVCVTPLEMIDRAHAIAAMPGVIFTTFGDMLRVPGSHQDFFSVRSRGADVRFVFSPLE
CCCEEECHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEEECHHH
ALQIARDNPRHEVVFLAVGFETTAPGNAMAIKQAATEGLGNFSALSSQVLVPPAMRAILS
HHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHC
SPDNLVQGFLAAGHVCTITGLCDYFPVAETYGVPIVPAGFEPVDLLNAVLKVVEMLEAGE
CCHHHHHHHHHCCCCEEEHHHHHHCCCHHHCCCCEEECCCCHHHHHHHHHHHHHHHHCCC
TGVVNAYERVVSRDGNAGALRVMDDVFEIADRTWRGIGVIARSGLRIREKYAAFDAERKF
CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC
DVGHIEPKESSLCMSGDVLRGILQPEACPAFGKQCTPLSPLGAPMVSGEGACAAYYRYQR
CCCCCCCCCCCEECCHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
AWGA
HCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8497190 [H]