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The map label for this gene is yddE [C]

Identifier: 193214434

GI number: 193214434

Start: 843590

End: 844495

Strand: Direct

Name: yddE [C]

Synonym: Ctha_0717

Alternate gene names: 193214434

Gene position: 843590-844495 (Clockwise)

Preceding gene: 193214433

Following gene: 193214435

Centisome position: 25.61

GC content: 48.9

Gene sequence:

>906_bases
ATGAGAAGGTTTAAAATCAAACAAGTTGATGCGTTCACCGACCGCGCTTTTACAGGGAATCCTGCGGCGGTACTTCCTTA
CGCTGATGGCCTAACTGATGATCAAATGCAGGCAATTGCCCGCGAAATGAACCTTTCTGAAACCGCGTACATCTTTAAAG
CACAAGATGGCGTTCATGACATGGAAATTCGCTGGATGACGCCCGTTGTGGAAGTGAGCGCGTGTGGACATGGTACCATC
GCGGCTTTTCATGCGCTTGACGAGGAAGGTCTGTTTGGCCTTGATAAAAAAGAACCCGTCCGGCATTTTAAGGTTAAAAC
CAAAGGCGGCACCCTGCCCGTTGAAATTAACCGCGAAACCGGGCGAACGATGATTAGTTTTGGCATGCCGATTCCAAAAT
TTGAAGAATATCTTGGTATGCGATTTGAGCTTTGCAACGCGTTGGGCATTTCGGCTGAACTGATAGACAAAAGGCTGCCC
GTTTGGATTTCTGAGCTTGGCTATGTTTTTATTCCCTTCGTTGACCGCGAATCGCTGCTTTCCATGAAACCCAATTTTGA
AGATCTTCGCCATCTTTCTCATCGCACCAAAATCGTGGGCTACTGCGCCTTTACAACTGAGACGGCTCATTCTGCCAGCG
CAGCTCATGCTCGATTTTTCGCACCTCAGCTTGGCATTAACGAAGACCCCGTTACCGGCACAGCGCTCGGACCGCTTGCG
TGCTACTTGTACTTGAACAAAGAGCTTCAAGGCGAAGGAAACATTTGCGCATCGCTGGAGCAAGGCTATGAAATGCACCG
AGGCGGACGCGTTTGGGTGGAAATGGCTGTTGGCAACCACACGCTGAATGATGTAAAAATTAGCGGTTACGCAATAACCG
TGCTTACAGGAGAAATTTTCGTCTGA

Upstream 100 bases:

>100_bases
TCTGCTGCAATCCGTTGCAAAGAATCTTCTTTTAGGCTATACTTAATGTGTGTTAAGCAATAACGCGAAAAAAGCCTGTT
CCATTGCAAATTATCCAACC

Downstream 100 bases:

>100_bases
TCAAAAAATATGCAAGATAGTTTGAATACAAATGCCGGACATTCGCAGCTAACCGCGTTTCTGAAATATTTGGCAAACGA
GCGCAACATGTCGGCCTACA

Product: phenazine biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MRRFKIKQVDAFTDRAFTGNPAAVLPYADGLTDDQMQAIAREMNLSETAYIFKAQDGVHDMEIRWMTPVVEVSACGHGTI
AAFHALDEEGLFGLDKKEPVRHFKVKTKGGTLPVEINRETGRTMISFGMPIPKFEEYLGMRFELCNALGISAELIDKRLP
VWISELGYVFIPFVDRESLLSMKPNFEDLRHLSHRTKIVGYCAFTTETAHSASAAHARFFAPQLGINEDPVTGTALGPLA
CYLYLNKELQGEGNICASLEQGYEMHRGGRVWVEMAVGNHTLNDVKISGYAITVLTGEIFV

Sequences:

>Translated_301_residues
MRRFKIKQVDAFTDRAFTGNPAAVLPYADGLTDDQMQAIAREMNLSETAYIFKAQDGVHDMEIRWMTPVVEVSACGHGTI
AAFHALDEEGLFGLDKKEPVRHFKVKTKGGTLPVEINRETGRTMISFGMPIPKFEEYLGMRFELCNALGISAELIDKRLP
VWISELGYVFIPFVDRESLLSMKPNFEDLRHLSHRTKIVGYCAFTTETAHSASAAHARFFAPQLGINEDPVTGTALGPLA
CYLYLNKELQGEGNICASLEQGYEMHRGGRVWVEMAVGNHTLNDVKISGYAITVLTGEIFV
>Mature_301_residues
MRRFKIKQVDAFTDRAFTGNPAAVLPYADGLTDDQMQAIAREMNLSETAYIFKAQDGVHDMEIRWMTPVVEVSACGHGTI
AAFHALDEEGLFGLDKKEPVRHFKVKTKGGTLPVEINRETGRTMISFGMPIPKFEEYLGMRFELCNALGISAELIDKRLP
VWISELGYVFIPFVDRESLLSMKPNFEDLRHLSHRTKIVGYCAFTTETAHSASAAHARFFAPQLGINEDPVTGTALGPLA
CYLYLNKELQGEGNICASLEQGYEMHRGGRVWVEMAVGNHTLNDVKISGYAITVLTGEIFV

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=317, Percent_Identity=30.2839116719243, Blast_Score=93, Evalue=4e-19,
Organism=Homo sapiens, GI74316009, Length=258, Percent_Identity=31.3953488372093, Blast_Score=91, Evalue=2e-18,
Organism=Escherichia coli, GI1787737, Length=299, Percent_Identity=31.7725752508361, Blast_Score=135, Evalue=5e-33,
Organism=Caenorhabditis elegans, GI17542160, Length=338, Percent_Identity=28.1065088757396, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17542154, Length=338, Percent_Identity=28.1065088757396, Blast_Score=77, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6321818, Length=311, Percent_Identity=28.9389067524116, Blast_Score=111, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 33512; Mature: 33512

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRFKIKQVDAFTDRAFTGNPAAVLPYADGLTDDQMQAIAREMNLSETAYIFKAQDGVHD
CCCEEEEHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCE
MEIRWMTPVVEVSACGHGTIAAFHALDEEGLFGLDKKEPVRHFKVKTKGGTLPVEINRET
EEEEEECCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCC
GRTMISFGMPIPKFEEYLGMRFELCNALGISAELIDKRLPVWISELGYVFIPFVDRESLL
CCEEEEECCCCHHHHHHHCCHHHHHHHHCCCHHHHHCCCCHHHHCCCEEEEEEECCHHHH
SMKPNFEDLRHLSHRTKIVGYCAFTTETAHSASAAHARFFAPQLGINEDPVTGTALGPLA
CCCCCHHHHHHHHHCCEEEEEEEEECCCCCCCCHHHHHEECCCCCCCCCCCCCCCHHHEE
CYLYLNKELQGEGNICASLEQGYEMHRGGRVWVEMAVGNHTLNDVKISGYAITVLTGEIF
EEEEECCEECCCCCEEEEHHHCHHHCCCCEEEEEEEECCCCCCEEEECCEEEEEEECEEE
V
C
>Mature Secondary Structure
MRRFKIKQVDAFTDRAFTGNPAAVLPYADGLTDDQMQAIAREMNLSETAYIFKAQDGVHD
CCCEEEEHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCE
MEIRWMTPVVEVSACGHGTIAAFHALDEEGLFGLDKKEPVRHFKVKTKGGTLPVEINRET
EEEEEECCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCC
GRTMISFGMPIPKFEEYLGMRFELCNALGISAELIDKRLPVWISELGYVFIPFVDRESLL
CCEEEEECCCCHHHHHHHCCHHHHHHHHCCCHHHHHCCCCHHHHCCCEEEEEEECCHHHH
SMKPNFEDLRHLSHRTKIVGYCAFTTETAHSASAAHARFFAPQLGINEDPVTGTALGPLA
CCCCCHHHHHHHHHCCEEEEEEEEECCCCCCCCHHHHHEECCCCCCCCCCCCCCCHHHEE
CYLYLNKELQGEGNICASLEQGYEMHRGGRVWVEMAVGNHTLNDVKISGYAITVLTGEIF
EEEEECCEECCCCCEEEEHHHCHHHCCCCEEEEEEEECCCCCCEEEECCEEEEEEECEEE
V
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11466286 [H]