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The map label for this gene is yjcF [C]

Identifier: 193214429

GI number: 193214429

Start: 836108

End: 838192

Strand: Direct

Name: yjcF [C]

Synonym: Ctha_0712

Alternate gene names: 193214429

Gene position: 836108-838192 (Clockwise)

Preceding gene: 193214427

Following gene: 193214432

Centisome position: 25.39

GC content: 50.98

Gene sequence:

>2085_bases
ATGGATTTCCTCTTTGCCGTACTTGCCGCGCTTTTTGCCGTATTTGGGGACATTATTTTTGCTTTTCTGCTTGTTTGGCT
CAGCGGTGCGTGGGGTTTAAAGCTGCGTGAAGTCCCTTTGCCCGAAGGTCATGTTAAAAGTCCGCGTCGGTTTTTATTTC
ATCTGCTATGGCGAGCGGGCTTGCTTACCTCGATGCCGCTTTTCGTTTTAACCGCCGCTTGGCAGTTTCCCATCCTTATT
TGGATTTTCGGCGCGCTATTGCTTCTCTTTTCGGTCGCCCTGCTGCTGGTTTGGCTGACTTTGGGAAGTGAGCCGATAAA
AGAAGCAACCCGAAAAGTCATTTCTTTCCTTGAACATCTTTGGCTGTGGAAAATAGGCGACGAGCAGAAAGAATTATATG
AAACGCATATTCGTTGGCGATTTGCTTGGTGGGGCGTGCGCACCCGTCGCAGCCGGAGAAACTTTAGCTTTTTTAAGCTG
CTTGCCCGAATGCGCCCGCTTTGGCTCATGCTTTCCGTCTTCATCATACCGTTATTATTATGGTTGCTCTGGTGGTTTTT
TATCCCTGACGCATTGAATCAGGCGTTTTTCCTGTCGGAAAAAGACATCGCCCGCGTTGTTATGGAAATTTTAAAACACA
ACACGGGCGTTTGGACGCTTATTGCCGTTTTGCTCGGCGCTTTTCCCGCTTGGGTGATTTGGGCGTTTCGAGACCGCAAC
AACCTGATGCAAATTGAAAACCAACGCAAAGACATTAACCTCAAGGACTTCCAAAAACTTTCCGAATGGGCTTCCGGCGC
ACATTTGCCGGAAAAAAAACGCATTGAAACGCGCTCCGATTCGGAAGAAAACAAAGGCAAATCGGTTACAACCGAATCCT
TTGAGCGGATGGAGGGGATTTTACACAGCCATCCCACACGGCGCGACGGCGCGGCCTCGCTGCAAATTGCCGCCGTCTAC
CAGCTTGAAGCCTTTTTGCGCGGCGATTACGGCGAGTTTTTCCGCCGCCCGGCCTTTCAATTGCTCAAAAGCCTTTGGCT
CTCGCTCATGCAGCCGCATGTAGAAGCATGGCGCGAAGTAGAAAAAGCAATGGAAGAGGCTTTAAATGTTGAGGCAAAGG
AAAAACGGGAAAGGTTAAACAAATGGAAAGAGAATCACTTTTGGCCTTGGCGAAATAAACTGCGAGAAACCATCGGCAGC
CCTTTGGGGCAGGCGCTCACGACGGTGCTTGCCGCCGAAGCGGGAAAAATTTTCCGCGACCATGCCCCCGATTTGCCCGG
CGCCTGTTTCGCCGGCCTGAACCACTCGTTGCCAAGCCTAAAACCGCTTGAATTGGATGCCCTAAATCTTAACGGCATCA
TCTTTCAGGGCGCAGACCTCCGTGCTGCAAATCTTCAGGGCGCAGACCTCATTTCTGCAAATCTTCAGGGCGCAGACCTC
ATTTCTGCAAATCTTCAGGGCGCAGACCTCCGTGCTGCAAATCTTCAGGGCGCAGACCTCAGTTCTGCAAATCTTCAGGG
CGCAGACCTCAGTTCTGCAAATCTTCAGGGCGCAGTCCTCTGGCTGGCAAATCTTCAGGGCGCAGTCCTCTGGCTGGCAA
ATCTTCAGGGCGCAGACCTCAGTGATGCAAAACTTCAGGGCGCAGTCCTCAGTTTTGCAAATCTTCAGGGCGCAGACCTC
CGTTCTGCAAAACTTCAGGGCGCAGACCTCCGTTCTGCAAATCTTCAGGGCGCAGACCTCCGTTCTGCAAATCTTCAGGG
CGCATACCTCCGTTCTGCAAATCTTCAGGGCGCATACCTCCGTTCTGCAAAACTTCAGGGCGCAGACCTCAGTGAGGCAA
ATCTTCAGGGCGCAGACCTCGATTCTGCAAAGCTTCAGGGCGCATACCTCAGAAATATTGAAATTGATGAGAAAACGGAT
TTCAACGGCGCGACAGCCGATGGCAAAACGAAAATTCAAGCTGGAAAATGGGAAATCGATATACTAAACATCGGTGAATT
CACTCTTGATGAGGAAAAAAGCCGTGCCTTGCGGGAGCAAGTGGTAAAGCAGGGGGTATGGTTTGTGGAAGATGAGGAGA
CATGA

Upstream 100 bases:

>100_bases
GCTCACGAAGCACAACAGGAAAGCTTGCCAGCGCGCCTTGCGCCCTTCTTAACCGATGGTTATCTTCAAAGACTTTCTCT
CATAAAACGAACAACGGATC

Downstream 100 bases:

>100_bases
GCGTGGGCAAACACTTTGTCATGCTGAACGACTCGTCTCGCGTCAGTGAAGCATCCACCATCTCCGCCACGCTGGATTCT
TCGCCTAAGAAAGGCTCAGA

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 694; Mature: 694

Protein sequence:

>694_residues
MDFLFAVLAALFAVFGDIIFAFLLVWLSGAWGLKLREVPLPEGHVKSPRRFLFHLLWRAGLLTSMPLFVLTAAWQFPILI
WIFGALLLLFSVALLLVWLTLGSEPIKEATRKVISFLEHLWLWKIGDEQKELYETHIRWRFAWWGVRTRRSRRNFSFFKL
LARMRPLWLMLSVFIIPLLLWLLWWFFIPDALNQAFFLSEKDIARVVMEILKHNTGVWTLIAVLLGAFPAWVIWAFRDRN
NLMQIENQRKDINLKDFQKLSEWASGAHLPEKKRIETRSDSEENKGKSVTTESFERMEGILHSHPTRRDGAASLQIAAVY
QLEAFLRGDYGEFFRRPAFQLLKSLWLSLMQPHVEAWREVEKAMEEALNVEAKEKRERLNKWKENHFWPWRNKLRETIGS
PLGQALTTVLAAEAGKIFRDHAPDLPGACFAGLNHSLPSLKPLELDALNLNGIIFQGADLRAANLQGADLISANLQGADL
ISANLQGADLRAANLQGADLSSANLQGADLSSANLQGAVLWLANLQGAVLWLANLQGADLSDAKLQGAVLSFANLQGADL
RSAKLQGADLRSANLQGADLRSANLQGAYLRSANLQGAYLRSAKLQGADLSEANLQGADLDSAKLQGAYLRNIEIDEKTD
FNGATADGKTKIQAGKWEIDILNIGEFTLDEEKSRALREQVVKQGVWFVEDEET

Sequences:

>Translated_694_residues
MDFLFAVLAALFAVFGDIIFAFLLVWLSGAWGLKLREVPLPEGHVKSPRRFLFHLLWRAGLLTSMPLFVLTAAWQFPILI
WIFGALLLLFSVALLLVWLTLGSEPIKEATRKVISFLEHLWLWKIGDEQKELYETHIRWRFAWWGVRTRRSRRNFSFFKL
LARMRPLWLMLSVFIIPLLLWLLWWFFIPDALNQAFFLSEKDIARVVMEILKHNTGVWTLIAVLLGAFPAWVIWAFRDRN
NLMQIENQRKDINLKDFQKLSEWASGAHLPEKKRIETRSDSEENKGKSVTTESFERMEGILHSHPTRRDGAASLQIAAVY
QLEAFLRGDYGEFFRRPAFQLLKSLWLSLMQPHVEAWREVEKAMEEALNVEAKEKRERLNKWKENHFWPWRNKLRETIGS
PLGQALTTVLAAEAGKIFRDHAPDLPGACFAGLNHSLPSLKPLELDALNLNGIIFQGADLRAANLQGADLISANLQGADL
ISANLQGADLRAANLQGADLSSANLQGADLSSANLQGAVLWLANLQGAVLWLANLQGADLSDAKLQGAVLSFANLQGADL
RSAKLQGADLRSANLQGADLRSANLQGAYLRSANLQGAYLRSAKLQGADLSEANLQGADLDSAKLQGAYLRNIEIDEKTD
FNGATADGKTKIQAGKWEIDILNIGEFTLDEEKSRALREQVVKQGVWFVEDEET
>Mature_694_residues
MDFLFAVLAALFAVFGDIIFAFLLVWLSGAWGLKLREVPLPEGHVKSPRRFLFHLLWRAGLLTSMPLFVLTAAWQFPILI
WIFGALLLLFSVALLLVWLTLGSEPIKEATRKVISFLEHLWLWKIGDEQKELYETHIRWRFAWWGVRTRRSRRNFSFFKL
LARMRPLWLMLSVFIIPLLLWLLWWFFIPDALNQAFFLSEKDIARVVMEILKHNTGVWTLIAVLLGAFPAWVIWAFRDRN
NLMQIENQRKDINLKDFQKLSEWASGAHLPEKKRIETRSDSEENKGKSVTTESFERMEGILHSHPTRRDGAASLQIAAVY
QLEAFLRGDYGEFFRRPAFQLLKSLWLSLMQPHVEAWREVEKAMEEALNVEAKEKRERLNKWKENHFWPWRNKLRETIGS
PLGQALTTVLAAEAGKIFRDHAPDLPGACFAGLNHSLPSLKPLELDALNLNGIIFQGADLRAANLQGADLISANLQGADL
ISANLQGADLRAANLQGADLSSANLQGADLSSANLQGAVLWLANLQGAVLWLANLQGADLSDAKLQGAVLSFANLQGADL
RSAKLQGADLRSANLQGADLRSANLQGAYLRSANLQGAYLRSAKLQGADLSEANLQGADLDSAKLQGAYLRNIEIDEKTD
FNGATADGKTKIQAGKWEIDILNIGEFTLDEEKSRALREQVVKQGVWFVEDEET

Specific function: Unknown

COG id: COG1357

COG function: function code S; Uncharacterized low-complexity proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 5 pentapeptide repeat domains [H]

Homologues:

Organism=Homo sapiens, GI39753959, Length=156, Percent_Identity=39.1025641025641, Blast_Score=104, Evalue=2e-22,
Organism=Drosophila melanogaster, GI221377802, Length=172, Percent_Identity=35.4651162790698, Blast_Score=95, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 78221; Mature: 78221

Theoretical pI: Translated: 7.47; Mature: 7.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFLFAVLAALFAVFGDIIFAFLLVWLSGAWGLKLREVPLPEGHVKSPRRFLFHLLWRAG
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHH
LLTSMPLFVLTAAWQFPILIWIFGALLLLFSVALLLVWLTLGSEPIKEATRKVISFLEHL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
WLWKIGDEQKELYETHIRWRFAWWGVRTRRSRRNFSFFKLLARMRPLWLMLSVFIIPLLL
HHHCCCCHHHHHHHHHHHEEEEEECHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
WLLWWFFIPDALNQAFFLSEKDIARVVMEILKHNTGVWTLIAVLLGAFPAWVIWAFRDRN
HHHHHHHHHHHHCHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEEECCCC
NLMQIENQRKDINLKDFQKLSEWASGAHLPEKKRIETRSDSEENKGKSVTTESFERMEGI
CCHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
LHSHPTRRDGAASLQIAAVYQLEAFLRGDYGEFFRRPAFQLLKSLWLSLMQPHVEAWREV
HHCCCCCCCCCCCEEHHHHHHHHHHHCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
EKAMEEALNVEAKEKRERLNKWKENHFWPWRNKLRETIGSPLGQALTTVLAAEAGKIFRD
HHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
HAPDLPGACFAGLNHSLPSLKPLELDALNLNGIIFQGADLRAANLQGADLISANLQGADL
CCCCCCCHHHHCCCCCCCCCCCCEEEEECCCEEEEECCCCEECCCCCCCEEECCCCCCCE
ISANLQGADLRAANLQGADLSSANLQGADLSSANLQGAVLWLANLQGAVLWLANLQGADL
EECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCC
SDAKLQGAVLSFANLQGADLRSAKLQGADLRSANLQGADLRSANLQGAYLRSANLQGAYL
CHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHH
RSAKLQGADLSEANLQGADLDSAKLQGAYLRNIEIDEKTDFNGATADGKTKIQAGKWEID
HHCCCCCCCCCCCCCCCCCCCHHHHCCHHEECCCCCCCCCCCCCCCCCCCEEECCCEEEE
ILNIGEFTLDEEKSRALREQVVKQGVWFVEDEET
EEECCCCCCCHHHHHHHHHHHHHCCCEEEECCCC
>Mature Secondary Structure
MDFLFAVLAALFAVFGDIIFAFLLVWLSGAWGLKLREVPLPEGHVKSPRRFLFHLLWRAG
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHH
LLTSMPLFVLTAAWQFPILIWIFGALLLLFSVALLLVWLTLGSEPIKEATRKVISFLEHL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
WLWKIGDEQKELYETHIRWRFAWWGVRTRRSRRNFSFFKLLARMRPLWLMLSVFIIPLLL
HHHCCCCHHHHHHHHHHHEEEEEECHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
WLLWWFFIPDALNQAFFLSEKDIARVVMEILKHNTGVWTLIAVLLGAFPAWVIWAFRDRN
HHHHHHHHHHHHCHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEEECCCC
NLMQIENQRKDINLKDFQKLSEWASGAHLPEKKRIETRSDSEENKGKSVTTESFERMEGI
CCHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
LHSHPTRRDGAASLQIAAVYQLEAFLRGDYGEFFRRPAFQLLKSLWLSLMQPHVEAWREV
HHCCCCCCCCCCCEEHHHHHHHHHHHCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
EKAMEEALNVEAKEKRERLNKWKENHFWPWRNKLRETIGSPLGQALTTVLAAEAGKIFRD
HHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
HAPDLPGACFAGLNHSLPSLKPLELDALNLNGIIFQGADLRAANLQGADLISANLQGADL
CCCCCCCHHHHCCCCCCCCCCCCEEEEECCCEEEEECCCCEECCCCCCCEEECCCCCCCE
ISANLQGADLRAANLQGADLSSANLQGADLSSANLQGAVLWLANLQGAVLWLANLQGADL
EECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCC
SDAKLQGAVLSFANLQGADLRSAKLQGADLRSANLQGADLRSANLQGAYLRSANLQGAYL
CHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHH
RSAKLQGADLSEANLQGADLDSAKLQGAYLRNIEIDEKTDFNGATADGKTKIQAGKWEID
HHCCCCCCCCCCCCCCCCCCCHHHHCCHHEECCCCCCCCCCCCCCCCCCCEEECCCEEEE
ILNIGEFTLDEEKSRALREQVVKQGVWFVEDEET
EEECCCCCCCHHHHHHHHHHHHHCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA