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The map label for this gene is ybjS [C]

Identifier: 193213939

GI number: 193213939

Start: 259080

End: 260099

Strand: Direct

Name: ybjS [C]

Synonym: Ctha_0220

Alternate gene names: 193213939

Gene position: 259080-260099 (Clockwise)

Preceding gene: 193213936

Following gene: 193213942

Centisome position: 7.87

GC content: 45.29

Gene sequence:

>1020_bases
ATGGCTGAAACAGCACTTGTCACTGGTGCAACCGGATTTATCGGTAGCTGGCTGACTGAAAAATTACTTGAAAAAGGCTA
TAAAGTTCGGGCGCTTGTTCGCCAGTCAAGCAATCGGGCTAATTTGCAAGGGCTTGATGTCGAGTATGTTGTGGGTGACT
ACAAAGATTTTAATTCCCTCAAAAAAGCGGTTCAAGGCGTGTCGTATGTTTTTCATACCGCCGGTGTCACGAAGGCAAAG
GCGGAAATGGAATATATCGATGGTAACGTAAGAGCCACCGAAAGTTTGCTGAAAGCAACCTACGAGGCAAACCCAAACAT
TACACGATTTTTGCATGTTTCGTCGCTTGCTTCCGTTGGCCCTGCCAAATCACCCAATGAACCGGTCAATGAGAAAACAA
CTGCCAAACCAATTACGATGTATGGCAGCAGCAAAAATATCACCGAACAGGCTTGCCAACGCTATATCTTTTTCCCGACC
GGAAAAGTTCAAACGCGCCTGCCCGTCACGATTGTTCGCCCGCCTGCTGTTTATGGCCCACGCGACAAAGACGTTCTGGA
ATTTTTCAAAACCGTGAATAGCGGCATTTTGCCCATCGTCGGTTTTGGGCCCAAAAAGCTTGTTAGTTTGATTCATGTTA
AAGACTTGGTTCGTGGCATCATTGATGCTGCTGAAGCAGAACAGGCAAAAGGGGAAACTTATTTTATTTCATCCGAGAAG
TTTTATTCGTGGGAAGAAGTCGGCGAAGTCACCAAAAAGGCGCTGGGCAAAGGCTTTGTGCTGAAATTGCCGATTCCGCA
TTTTGCCGTTTCTATTGCAGCTGCCATTTCTGAAGCAACCAGCAAATCAGGCAACACGCCGCCACCTTTGAATCGCGAAA
AAGTTAAGGACATCGTTCAAAATTATTGGATTTGCTCAGTTGATAAAGCCAAGAAGGAACTTGGATTTAAGGAACAAATC
AGCCTTGAGCAAGGCATTAAAGAAACGGTGGATTGGTATAAATCCAAAGGTTGGCTTTAA

Upstream 100 bases:

>100_bases
GGCTCAGAAAATTATGTCGAAACCGTGGGAGGCACTTAAAACTTAAATTGTTTGGAACATTCAGCGCAGCCTCCTAAAAA
ACTAAAAACCTAATTGAAAG

Downstream 100 bases:

>100_bases
TCAACTTTGCTGTTAGGCACAACGTGTAAGTCTCGTTTTCTGTGCCAAGTTGAACCACTGAGAAATAAAAAAGCCTCGCG
CAAAGCGAGGCTTTTGAGTT

Product: NAD-dependent epimerase/dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 338

Protein sequence:

>339_residues
MAETALVTGATGFIGSWLTEKLLEKGYKVRALVRQSSNRANLQGLDVEYVVGDYKDFNSLKKAVQGVSYVFHTAGVTKAK
AEMEYIDGNVRATESLLKATYEANPNITRFLHVSSLASVGPAKSPNEPVNEKTTAKPITMYGSSKNITEQACQRYIFFPT
GKVQTRLPVTIVRPPAVYGPRDKDVLEFFKTVNSGILPIVGFGPKKLVSLIHVKDLVRGIIDAAEAEQAKGETYFISSEK
FYSWEEVGEVTKKALGKGFVLKLPIPHFAVSIAAAISEATSKSGNTPPPLNREKVKDIVQNYWICSVDKAKKELGFKEQI
SLEQGIKETVDWYKSKGWL

Sequences:

>Translated_339_residues
MAETALVTGATGFIGSWLTEKLLEKGYKVRALVRQSSNRANLQGLDVEYVVGDYKDFNSLKKAVQGVSYVFHTAGVTKAK
AEMEYIDGNVRATESLLKATYEANPNITRFLHVSSLASVGPAKSPNEPVNEKTTAKPITMYGSSKNITEQACQRYIFFPT
GKVQTRLPVTIVRPPAVYGPRDKDVLEFFKTVNSGILPIVGFGPKKLVSLIHVKDLVRGIIDAAEAEQAKGETYFISSEK
FYSWEEVGEVTKKALGKGFVLKLPIPHFAVSIAAAISEATSKSGNTPPPLNREKVKDIVQNYWICSVDKAKKELGFKEQI
SLEQGIKETVDWYKSKGWL
>Mature_338_residues
AETALVTGATGFIGSWLTEKLLEKGYKVRALVRQSSNRANLQGLDVEYVVGDYKDFNSLKKAVQGVSYVFHTAGVTKAKA
EMEYIDGNVRATESLLKATYEANPNITRFLHVSSLASVGPAKSPNEPVNEKTTAKPITMYGSSKNITEQACQRYIFFPTG
KVQTRLPVTIVRPPAVYGPRDKDVLEFFKTVNSGILPIVGFGPKKLVSLIHVKDLVRGIIDAAEAEQAKGETYFISSEKF
YSWEEVGEVTKKALGKGFVLKLPIPHFAVSIAAAISEATSKSGNTPPPLNREKVKDIVQNYWICSVDKAKKELGFKEQIS
LEQGIKETVDWYKSKGWL

Specific function: Putative nucleotide sugar epimerase/dehydrogenase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI116268111, Length=356, Percent_Identity=26.123595505618, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI193211614, Length=351, Percent_Identity=22.5071225071225, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI8393516, Length=351, Percent_Identity=22.5071225071225, Blast_Score=66, Evalue=4e-11,
Organism=Escherichia coli, GI87081792, Length=344, Percent_Identity=23.546511627907, Blast_Score=79, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI71987463, Length=296, Percent_Identity=26.0135135135135, Blast_Score=93, Evalue=2e-19,
Organism=Saccharomyces cerevisiae, GI6321437, Length=368, Percent_Identity=21.7391304347826, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001509
- InterPro:   IPR016040 [H]

Pfam domain/function: PF01370 Epimerase [H]

EC number: NA

Molecular weight: Translated: 37388; Mature: 37257

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAETALVTGATGFIGSWLTEKLLEKGYKVRALVRQSSNRANLQGLDVEYVVGDYKDFNSL
CCCCEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHH
KKAVQGVSYVFHTAGVTKAKAEMEYIDGNVRATESLLKATYEANPNITRFLHVSSLASVG
HHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEHHHHHHCC
PAKSPNEPVNEKTTAKPITMYGSSKNITEQACQRYIFFPTGKVQTRLPVTIVRPPAVYGP
CCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHCCEEECCCCCCCCCCCEEEECCCCCCCC
RDKDVLEFFKTVNSGILPIVGFGPKKLVSLIHVKDLVRGIIDAAEAEQAKGETYFISSEK
CCHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC
FYSWEEVGEVTKKALGKGFVLKLPIPHFAVSIAAAISEATSKSGNTPPPLNREKVKDIVQ
CCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
NYWICSVDKAKKELGFKEQISLEQGIKETVDWYKSKGWL
HCEEEECHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AETALVTGATGFIGSWLTEKLLEKGYKVRALVRQSSNRANLQGLDVEYVVGDYKDFNSL
CCCEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHH
KKAVQGVSYVFHTAGVTKAKAEMEYIDGNVRATESLLKATYEANPNITRFLHVSSLASVG
HHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEHHHHHHCC
PAKSPNEPVNEKTTAKPITMYGSSKNITEQACQRYIFFPTGKVQTRLPVTIVRPPAVYGP
CCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHCCEEECCCCCCCCCCCEEEECCCCCCCC
RDKDVLEFFKTVNSGILPIVGFGPKKLVSLIHVKDLVRGIIDAAEAEQAKGETYFISSEK
CCHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC
FYSWEEVGEVTKKALGKGFVLKLPIPHFAVSIAAAISEATSKSGNTPPPLNREKVKDIVQ
CCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
NYWICSVDKAKKELGFKEQISLEQGIKETVDWYKSKGWL
HCEEEECHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]