| Definition | Chloroherpeton thalassium ATCC 35110 chromosome, complete genome. |
|---|---|
| Accession | NC_011026 |
| Length | 3,293,456 |
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The map label for this gene is comEC [H]
Identifier: 193213810
GI number: 193213810
Start: 106438
End: 108648
Strand: Direct
Name: comEC [H]
Synonym: Ctha_0091
Alternate gene names: 193213810
Gene position: 106438-108648 (Clockwise)
Preceding gene: 193213807
Following gene: 193213811
Centisome position: 3.23
GC content: 42.97
Gene sequence:
>2211_bases ATGCAAGCTTATCCCTCCGTGCGGCTGCTCTTTTTGAGCATCGCTGGCATTTTGCTTGGCGAAGCGTTTCCCGCTTATGC CAAAATTTATTTATGCGCCGCTGCTGGACTTGGCGCATTGTCGTTTTTTCTTGCCGTTTTTGACTTGTTTTTTAAGCGTT ATGTTTTTCTAAAAAGTTGGCCAGCGAGCTATATTTTTTCTGTGATATTTTCGTTTGCAGCGCTCATTTCTTTCCAAGAA ACCCGCGTTTCGCACAATTCCATTTTGCACTATCTCAATGACGAGCACTGGATAAAAGGGAAAATTTTGGGCAAACCGAA CATCTCGGAAAACCATGCTTATTGGGACATGGAAGTTCGGGAAATCATCGTTGAAATTGATACGCTTCCGGTTTCGGGAA AAGTGCGCGTGTGGCAAAGTTCGCCGCGAAAGCTTGATATAGCGCTTCAAGATGGCGAGTTCGTTTGGGCTTTTGGCAAA CTCAAATTGCCTGAGCCCACCCAAAATAAAGGCGAAATTGACTTTGCGAAATATTTAGCGTCAAAAGGAATTTACGCCGA ACTAAAAAGCTACGGAGAAGGAAATCTTCAGCAAATAAATGAAGTGGATTTATCCATATTTGAGCAGTTTTTGGTAAAGC CAACTTATGATTTTATCGATCATTCGATTGAAAAATTGATTCCTTTCGGCGACGAAAAATCGTTCATCAAAGCGATTTTA CTTGGCGATAAAAGTGGCCTTTCCGATGAGATAAAACTGGCTTTTCAGCGCACAGGAACATTTCACGTGTTGGCGATTTC CGGTCTCCATGTTGGATTATTTGTGCTCGTTTTGGGCGCATTTTCGCAGCGATTTAAGCAATCGCGGAGTGGAAAATGGG TGGTTTTTCTCATTTCCACTTTTGTGCTTTTGCTTTACGCCGCGGTGACAGGCGCTGCGCCGCCAGTGAAACGCGCCGTT TTAATGGCGATTGTCTTTTTAGGCACAACGCTTTACGAAAAAAAGACTTACGCATTAAACACGCTCGCCTTTGCGGATTT CCTCATCCTTCTAATTTCGCCAAAAGATTTGTTTTCGCTCAGCTTTTTGCTCTCAAACGCGGCGGTGATTTCAATCATTT TACTTTACCCAAAACTCATTTCTCTTGCCATTTTTGACAACATCGAAAGCTCAAAATATTGGCTCTTGCCGCAGATTGGG GGAATTGTAAAAAATATTTGGCAAGCCATTGCTTTGACAATTTCGGCAAGTCTCGGGGTTTCGCCGATTTTGGGTTTGAC CTTTGGCAGCGTTCCGTTGCTTGGTTTGCTCGCAAATTTGCCGGTCACGTTTCTCGTGTCGTTGGCGGTTTATGCCATGC TTCCCGCGCTATTTTTCAATTTGTGTTGCGCCGAGTTCGCCGCGCTTTACGCGCTTTGCGCATGGTTTTTCATCCGCGTG AGCATTCAGATTAGCAATTGGTTCAGCCAGTTTTCCTTTGCAGCAATTTCCATAAATGCAAGTTGGCTAAGCGCCCTGTC GTTTTACCTTTTTATCGGATTCTTGTTTAACCTTTATAACCAAAAAAGCAGAGCAAAATGGACGATATTTTTACTCATTA GTTTGAATTTTATTCTGTTTGGTAAACTCTTTTTTGAGAAAAATAAAGAAGAAAAGTTAATCATAAATGATCTCAGAAAA GGCGTTTCCGTTCTGTGTAAAACCCAAACAGAATCAATCGTGATCGATGTTGGCATGAGCGATTATGACGCGACGCGAAC CCTGAAACAAGTTCAAGTTTTTCACGCTTTGCCGAGCGCATTTTTGCAATTTGCTTCATCTGACCGAATCATCACGGAGG CTGCGACTGCTCCGATTTTTTCAAGAAAAGAACATCAGCTTCGGCTAAAAACCATCGGCGTTTTTCGCCCAAATAAAAAT GTGATGAAAGTGATGACGAAAACGCAGCAAGTACTTTTCGTGAAAAAAGTGGGCGTATTAAAACCCGAGCCATTTTATCG AGTAAGCACATTGATTTTGCATTTGCGAAAATTTTCTGACGCAGACGAAGTGCGTTTGCGCGAATGGGTGAATTTTGCAA AGCCCGAACGGGTTGTTTTTTCAACGAGCCCGTTTATGCGAAAATCGGAGCGGCAAAAACTACACAAGCTGATTTTTGCC GAAGCGCGCTATTTTTCGCCGCAAATCAATGGGCAGCTCGTGTTTGATTAA
Upstream 100 bases:
>100_bases ACCCCGCTTAAAACGCGCCGGCTTTTGTTGCACGATTTTCAGGTGTTTTTCCTAATTTTCAGAAACATTGTTCTGATAAC GCAACGCATCCCCCAAAACC
Downstream 100 bases:
>100_bases CCTGAAAAAAACAGAATGCAAATGATTGACATCAAAATAACGAAGGCCGCCGAAGAAAAAATACACGATTTAACAACTTC CGGCGAAGTGGAGCAAGGGA
Product: ComEC/Rec2-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 736; Mature: 736
Protein sequence:
>736_residues MQAYPSVRLLFLSIAGILLGEAFPAYAKIYLCAAAGLGALSFFLAVFDLFFKRYVFLKSWPASYIFSVIFSFAALISFQE TRVSHNSILHYLNDEHWIKGKILGKPNISENHAYWDMEVREIIVEIDTLPVSGKVRVWQSSPRKLDIALQDGEFVWAFGK LKLPEPTQNKGEIDFAKYLASKGIYAELKSYGEGNLQQINEVDLSIFEQFLVKPTYDFIDHSIEKLIPFGDEKSFIKAIL LGDKSGLSDEIKLAFQRTGTFHVLAISGLHVGLFVLVLGAFSQRFKQSRSGKWVVFLISTFVLLLYAAVTGAAPPVKRAV LMAIVFLGTTLYEKKTYALNTLAFADFLILLISPKDLFSLSFLLSNAAVISIILLYPKLISLAIFDNIESSKYWLLPQIG GIVKNIWQAIALTISASLGVSPILGLTFGSVPLLGLLANLPVTFLVSLAVYAMLPALFFNLCCAEFAALYALCAWFFIRV SIQISNWFSQFSFAAISINASWLSALSFYLFIGFLFNLYNQKSRAKWTIFLLISLNFILFGKLFFEKNKEEKLIINDLRK GVSVLCKTQTESIVIDVGMSDYDATRTLKQVQVFHALPSAFLQFASSDRIITEAATAPIFSRKEHQLRLKTIGVFRPNKN VMKVMTKTQQVLFVKKVGVLKPEPFYRVSTLILHLRKFSDADEVRLREWVNFAKPERVVFSTSPFMRKSERQKLHKLIFA EARYFSPQINGQLVFD
Sequences:
>Translated_736_residues MQAYPSVRLLFLSIAGILLGEAFPAYAKIYLCAAAGLGALSFFLAVFDLFFKRYVFLKSWPASYIFSVIFSFAALISFQE TRVSHNSILHYLNDEHWIKGKILGKPNISENHAYWDMEVREIIVEIDTLPVSGKVRVWQSSPRKLDIALQDGEFVWAFGK LKLPEPTQNKGEIDFAKYLASKGIYAELKSYGEGNLQQINEVDLSIFEQFLVKPTYDFIDHSIEKLIPFGDEKSFIKAIL LGDKSGLSDEIKLAFQRTGTFHVLAISGLHVGLFVLVLGAFSQRFKQSRSGKWVVFLISTFVLLLYAAVTGAAPPVKRAV LMAIVFLGTTLYEKKTYALNTLAFADFLILLISPKDLFSLSFLLSNAAVISIILLYPKLISLAIFDNIESSKYWLLPQIG GIVKNIWQAIALTISASLGVSPILGLTFGSVPLLGLLANLPVTFLVSLAVYAMLPALFFNLCCAEFAALYALCAWFFIRV SIQISNWFSQFSFAAISINASWLSALSFYLFIGFLFNLYNQKSRAKWTIFLLISLNFILFGKLFFEKNKEEKLIINDLRK GVSVLCKTQTESIVIDVGMSDYDATRTLKQVQVFHALPSAFLQFASSDRIITEAATAPIFSRKEHQLRLKTIGVFRPNKN VMKVMTKTQQVLFVKKVGVLKPEPFYRVSTLILHLRKFSDADEVRLREWVNFAKPERVVFSTSPFMRKSERQKLHKLIFA EARYFSPQINGQLVFD >Mature_736_residues MQAYPSVRLLFLSIAGILLGEAFPAYAKIYLCAAAGLGALSFFLAVFDLFFKRYVFLKSWPASYIFSVIFSFAALISFQE TRVSHNSILHYLNDEHWIKGKILGKPNISENHAYWDMEVREIIVEIDTLPVSGKVRVWQSSPRKLDIALQDGEFVWAFGK LKLPEPTQNKGEIDFAKYLASKGIYAELKSYGEGNLQQINEVDLSIFEQFLVKPTYDFIDHSIEKLIPFGDEKSFIKAIL LGDKSGLSDEIKLAFQRTGTFHVLAISGLHVGLFVLVLGAFSQRFKQSRSGKWVVFLISTFVLLLYAAVTGAAPPVKRAV LMAIVFLGTTLYEKKTYALNTLAFADFLILLISPKDLFSLSFLLSNAAVISIILLYPKLISLAIFDNIESSKYWLLPQIG GIVKNIWQAIALTISASLGVSPILGLTFGSVPLLGLLANLPVTFLVSLAVYAMLPALFFNLCCAEFAALYALCAWFFIRV SIQISNWFSQFSFAAISINASWLSALSFYLFIGFLFNLYNQKSRAKWTIFLLISLNFILFGKLFFEKNKEEKLIINDLRK GVSVLCKTQTESIVIDVGMSDYDATRTLKQVQVFHALPSAFLQFASSDRIITEAATAPIFSRKEHQLRLKTIGVFRPNKN VMKVMTKTQQVLFVKKVGVLKPEPFYRVSTLILHLRKFSDADEVRLREWVNFAKPERVVFSTSPFMRKSERQKLHKLIFA EARYFSPQINGQLVFD
Specific function: The comE operon is required for the binding and uptake of transforming DNA. ComEC is required for internalization but is dispensable for DNA binding [H]
COG id: COG0658
COG function: function code R; Predicted membrane metal-binding protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae REC2, N.gonorrhoeae ComA and E.coli YcaI [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 - InterPro: IPR004477 - InterPro: IPR004797 [H]
Pfam domain/function: PF03772 Competence; PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 83099; Mature: 83099
Theoretical pI: Translated: 9.92; Mature: 9.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQAYPSVRLLFLSIAGILLGEAFPAYAKIYLCAAAGLGALSFFLAVFDLFFKRYVFLKSW CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PASYIFSVIFSFAALISFQETRVSHNSILHYLNDEHWIKGKILGKPNISENHAYWDMEVR CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCEECHHHH EIIVEIDTLPVSGKVRVWQSSPRKLDIALQDGEFVWAFGKLKLPEPTQNKGEIDFAKYLA HHHHHHCCCCCCCEEEEECCCCCEEEEEEECCCEEEEECEEECCCCCCCCCCHHHHHHHH SKGIYAELKSYGEGNLQQINEVDLSIFEQFLVKPTYDFIDHSIEKLIPFGDEKSFIKAIL CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHE LGDKSGLSDEIKLAFQRTGTFHVLAISGLHVGLFVLVLGAFSQRFKQSRSGKWVVFLIST ECCCCCCCHHHHHHEECCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHH FVLLLYAAVTGAAPPVKRAVLMAIVFLGTTLYEKKTYALNTLAFADFLILLISPKDLFSL HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHH SFLLSNAAVISIILLYPKLISLAIFDNIESSKYWLLPQIGGIVKNIWQAIALTISASLGV HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCC SPILGLTFGSVPLLGLLANLPVTFLVSLAVYAMLPALFFNLCCAEFAALYALCAWFFIRV CHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SIQISNWFSQFSFAAISINASWLSALSFYLFIGFLFNLYNQKSRAKWTIFLLISLNFILF EEEHHHHHHHHEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHH GKLFFEKNKEEKLIINDLRKGVSVLCKTQTESIVIDVGMSDYDATRTLKQVQVFHALPSA HHHHHHCCCCCHHHHHHHHHHHHHEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHH FLQFASSDRIITEAATAPIFSRKEHQLRLKTIGVFRPNKNVMKVMTKTQQVLFVKKVGVL HHHHCCCCCEEEHHHCCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCC KPEPFYRVSTLILHLRKFSDADEVRLREWVNFAKPERVVFSTSPFMRKSERQKLHKLIFA CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHH EARYFSPQINGQLVFD HHHHCCCCCCCEEEEC >Mature Secondary Structure MQAYPSVRLLFLSIAGILLGEAFPAYAKIYLCAAAGLGALSFFLAVFDLFFKRYVFLKSW CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PASYIFSVIFSFAALISFQETRVSHNSILHYLNDEHWIKGKILGKPNISENHAYWDMEVR CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCEECHHHH EIIVEIDTLPVSGKVRVWQSSPRKLDIALQDGEFVWAFGKLKLPEPTQNKGEIDFAKYLA HHHHHHCCCCCCCEEEEECCCCCEEEEEEECCCEEEEECEEECCCCCCCCCCHHHHHHHH SKGIYAELKSYGEGNLQQINEVDLSIFEQFLVKPTYDFIDHSIEKLIPFGDEKSFIKAIL CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHE LGDKSGLSDEIKLAFQRTGTFHVLAISGLHVGLFVLVLGAFSQRFKQSRSGKWVVFLIST ECCCCCCCHHHHHHEECCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHH FVLLLYAAVTGAAPPVKRAVLMAIVFLGTTLYEKKTYALNTLAFADFLILLISPKDLFSL HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHH SFLLSNAAVISIILLYPKLISLAIFDNIESSKYWLLPQIGGIVKNIWQAIALTISASLGV HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCC SPILGLTFGSVPLLGLLANLPVTFLVSLAVYAMLPALFFNLCCAEFAALYALCAWFFIRV CHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SIQISNWFSQFSFAAISINASWLSALSFYLFIGFLFNLYNQKSRAKWTIFLLISLNFILF EEEHHHHHHHHEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHH GKLFFEKNKEEKLIINDLRKGVSVLCKTQTESIVIDVGMSDYDATRTLKQVQVFHALPSA HHHHHHCCCCCHHHHHHHHHHHHHEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHH FLQFASSDRIITEAATAPIFSRKEHQLRLKTIGVFRPNKNVMKVMTKTQQVLFVKKVGVL HHHHCCCCCEEEHHHCCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCC KPEPFYRVSTLILHLRKFSDADEVRLREWVNFAKPERVVFSTSPFMRKSERQKLHKLIFA CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHH EARYFSPQINGQLVFD HHHHCCCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7968523; 8969508; 9384377 [H]