| Definition | Chloroherpeton thalassium ATCC 35110 chromosome, complete genome. |
|---|---|
| Accession | NC_011026 |
| Length | 3,293,456 |
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The map label for this gene is 193213788
Identifier: 193213788
GI number: 193213788
Start: 81609
End: 83069
Strand: Direct
Name: 193213788
Synonym: Ctha_0069
Alternate gene names: NA
Gene position: 81609-83069 (Clockwise)
Preceding gene: 193213787
Following gene: 193213789
Centisome position: 2.48
GC content: 45.24
Gene sequence:
>1461_bases ATGACACCGTTTAATAGCCATCCCCCCAATAGACTCACCAAAACGCTTGATGCAATTAGCAATGCGGTTGATTGGGACAA AGTGCTAAAATTTTTAGACGAGCATTCTGTTGAAGACTCAATCGTGAAACTTCCACCTGAAAAGCTGCTGCGAAACATGA AGTTCGTGTTCCTACAGCATATTTACGATCTTGCCGACTATGACTTAATCGAACTCATCAACGATCGGATCTCTTTTAAG ATCTTTTTTGGACTTGAGCCTGATGATGATTTTGAAGATGATGAGGCTTCAGCTGCGTTTCGAGAGCTGCTTCTTGAAAA AAGGCTGTACACGCCTCTGATTAATTTTATATGGGCATCTCTTGAAATCAGCGGCTTTTCGATTGAAAAAGGTGTTATTA TGGATGCGCGAATACGCGACACCGAGACACCTGCGCCAAAACCACCCGACACGCCCCACGAACCAGCAAAGCACCCATCA CCTGAATTGCATATTAGTTATGACACCGTTCAAAAGATGATTCGCGGTGAAATTGCGCAGCCATTTGAAACCTATGCGCT ACAAATGCAGTTGCATCAAGCTCAAAAAGATGTTCGCAGCGGCGCGCTTTCTTTGGACGAAGCCACGGAAAATCTGTATA AACTCTGCGCTTTGGTGCTAACGAAAAAAAAGCCGGCGGAAAAAAGCCCTACGCCGCCAGCCAGCCCGGCACCAAAAACA ACCACACCTCATGCTTTACCACAGAAAGTCAACCATGACCTTTTGAGAAAGCTGATTCTGGGCGAAGTTCACTATCACTT CAAGCATTATGCGCTTCAGATGCAACTGCATCAATCCCAAAAAGAAGTCCGCAACGGCGTGATTTCCTTAGACGAAGCAA CAGACAACCTTTATGAGCTTTGCAAGCGCTTGCTGACGAAACAGTTGCCGGCTCATAAACCGCAAGTCGAACACGCCTTG CCACCAGCAAAAGAGCCGCCAGCCACATTCAAAATCAACCGCGAGATCCTTGAAAAAATGATTCGCGGCGAGCTCAACCA AAACTTCAAGCATTATGCACTTCAAATGCAATTGCATCAAGCGAAAAAAGAAGTTGGCTCGGGCAGTTGCTCAATCGACG AAGCCGTTGAAAAGCTCTACGATCTTTGCAAGCATGTACTTGTGCACAAGCCATACGACGAGCTCACGCACGAAACCCAC GACACGCACGAAACGCATCCGCTTCCGCAACATAGAAAATTACCCGACATCAACCGGGTTGAATGGAAAAAGTTAGTTAC GGGGGAATTGGAACATCAATTTAGAAATTATGTTTTGCAGGTGCAGCTACACCAAACTAAAAAAGAAGTTCGCAGCGGAA AGCTCTCGGTTGAACGCGCTGTTCAAAATTTATACAATTTATGCCTAAGGGTTCCCTTAGCGGTTCAAACAGATTTCAAA CAAATTTTTAAAGAGTGGTAA
Upstream 100 bases:
>100_bases CCCGTTTTCACTCACATGTTTTAATAAAAAAGGTATTTTGCGGTTTTCAGATGCGGATACCATTTGTTGCTGGATGCTTT AACTTTTTTATGTAGAAGAT
Downstream 100 bases:
>100_bases GCCATGCAAAAAAAGCTATATACACTTGCAGAAGTGACGGAGTTTATTCTGCAAGGCGCTAAATTAGTCATTTCTGCCGA TGAAAGCTTGTTGGATCAAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 486; Mature: 485
Protein sequence:
>486_residues MTPFNSHPPNRLTKTLDAISNAVDWDKVLKFLDEHSVEDSIVKLPPEKLLRNMKFVFLQHIYDLADYDLIELINDRISFK IFFGLEPDDDFEDDEASAAFRELLLEKRLYTPLINFIWASLEISGFSIEKGVIMDARIRDTETPAPKPPDTPHEPAKHPS PELHISYDTVQKMIRGEIAQPFETYALQMQLHQAQKDVRSGALSLDEATENLYKLCALVLTKKKPAEKSPTPPASPAPKT TTPHALPQKVNHDLLRKLILGEVHYHFKHYALQMQLHQSQKEVRNGVISLDEATDNLYELCKRLLTKQLPAHKPQVEHAL PPAKEPPATFKINREILEKMIRGELNQNFKHYALQMQLHQAKKEVGSGSCSIDEAVEKLYDLCKHVLVHKPYDELTHETH DTHETHPLPQHRKLPDINRVEWKKLVTGELEHQFRNYVLQVQLHQTKKEVRSGKLSVERAVQNLYNLCLRVPLAVQTDFK QIFKEW
Sequences:
>Translated_486_residues MTPFNSHPPNRLTKTLDAISNAVDWDKVLKFLDEHSVEDSIVKLPPEKLLRNMKFVFLQHIYDLADYDLIELINDRISFK IFFGLEPDDDFEDDEASAAFRELLLEKRLYTPLINFIWASLEISGFSIEKGVIMDARIRDTETPAPKPPDTPHEPAKHPS PELHISYDTVQKMIRGEIAQPFETYALQMQLHQAQKDVRSGALSLDEATENLYKLCALVLTKKKPAEKSPTPPASPAPKT TTPHALPQKVNHDLLRKLILGEVHYHFKHYALQMQLHQSQKEVRNGVISLDEATDNLYELCKRLLTKQLPAHKPQVEHAL PPAKEPPATFKINREILEKMIRGELNQNFKHYALQMQLHQAKKEVGSGSCSIDEAVEKLYDLCKHVLVHKPYDELTHETH DTHETHPLPQHRKLPDINRVEWKKLVTGELEHQFRNYVLQVQLHQTKKEVRSGKLSVERAVQNLYNLCLRVPLAVQTDFK QIFKEW >Mature_485_residues TPFNSHPPNRLTKTLDAISNAVDWDKVLKFLDEHSVEDSIVKLPPEKLLRNMKFVFLQHIYDLADYDLIELINDRISFKI FFGLEPDDDFEDDEASAAFRELLLEKRLYTPLINFIWASLEISGFSIEKGVIMDARIRDTETPAPKPPDTPHEPAKHPSP ELHISYDTVQKMIRGEIAQPFETYALQMQLHQAQKDVRSGALSLDEATENLYKLCALVLTKKKPAEKSPTPPASPAPKTT TPHALPQKVNHDLLRKLILGEVHYHFKHYALQMQLHQSQKEVRNGVISLDEATDNLYELCKRLLTKQLPAHKPQVEHALP PAKEPPATFKINREILEKMIRGELNQNFKHYALQMQLHQAKKEVGSGSCSIDEAVEKLYDLCKHVLVHKPYDELTHETHD THETHPLPQHRKLPDINRVEWKKLVTGELEHQFRNYVLQVQLHQTKKEVRSGKLSVERAVQNLYNLCLRVPLAVQTDFKQ IFKEW
Specific function: Unknown
COG id: COG3039
COG function: function code L; Transposase and inactivated derivatives, IS5 family
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56149; Mature: 56018
Theoretical pI: Translated: 7.01; Mature: 7.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPFNSHPPNRLTKTLDAISNAVDWDKVLKFLDEHSVEDSIVKLPPEKLLRNMKFVFLQH CCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHH IYDLADYDLIELINDRISFKIFFGLEPDDDFEDDEASAAFRELLLEKRLYTPLINFIWAS HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH LEISGFSIEKGVIMDARIRDTETPAPKPPDTPHEPAKHPSPELHISYDTVQKMIRGEIAQ HEECCEEECCCCEEECEECCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHCC PFETYALQMQLHQAQKDVRSGALSLDEATENLYKLCALVLTKKKPAEKSPTPPASPAPKT HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC TTPHALPQKVNHDLLRKLILGEVHYHFKHYALQMQLHQSQKEVRNGVISLDEATDNLYEL CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHH CKRLLTKQLPAHKPQVEHALPPAKEPPATFKINREILEKMIRGELNQNFKHYALQMQLHQ HHHHHHHHCCCCCCCHHHCCCCCCCCCCCEEECHHHHHHHHHHHHCCCHHHHHHHHHHHH AKKEVGSGSCSIDEAVEKLYDLCKHVLVHKPYDELTHETHDTHETHPLPQHRKLPDINRV HHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHH EWKKLVTGELEHQFRNYVLQVQLHQTKKEVRSGKLSVERAVQNLYNLCLRVPLAVQTDFK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHH QIFKEW HHHHCC >Mature Secondary Structure TPFNSHPPNRLTKTLDAISNAVDWDKVLKFLDEHSVEDSIVKLPPEKLLRNMKFVFLQH CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHH IYDLADYDLIELINDRISFKIFFGLEPDDDFEDDEASAAFRELLLEKRLYTPLINFIWAS HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH LEISGFSIEKGVIMDARIRDTETPAPKPPDTPHEPAKHPSPELHISYDTVQKMIRGEIAQ HEECCEEECCCCEEECEECCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHCC PFETYALQMQLHQAQKDVRSGALSLDEATENLYKLCALVLTKKKPAEKSPTPPASPAPKT HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC TTPHALPQKVNHDLLRKLILGEVHYHFKHYALQMQLHQSQKEVRNGVISLDEATDNLYEL CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHH CKRLLTKQLPAHKPQVEHALPPAKEPPATFKINREILEKMIRGELNQNFKHYALQMQLHQ HHHHHHHHCCCCCCCHHHCCCCCCCCCCCEEECHHHHHHHHHHHHCCCHHHHHHHHHHHH AKKEVGSGSCSIDEAVEKLYDLCKHVLVHKPYDELTHETHDTHETHPLPQHRKLPDINRV HHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHH EWKKLVTGELEHQFRNYVLQVQLHQTKKEVRSGKLSVERAVQNLYNLCLRVPLAVQTDFK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHH QIFKEW HHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA