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The map label for this gene is 193213711

Identifier: 193213711

GI number: 193213711

Start: 2280708

End: 2281535

Strand: Direct

Name: 193213711

Synonym: Cpar_2078

Alternate gene names: NA

Gene position: 2280708-2281535 (Clockwise)

Preceding gene: 193213710

Following gene: 193213712

Centisome position: 99.63

GC content: 56.64

Gene sequence:

>828_bases
ATGACCCGATACGACCAGCCATACATGCCCGGCGGCTTTCAGGTAATGCCCCCGGCGATCAAGACCCTCATCATCGCCAA
CGTGGCGATCTTCCTGTTCCAGCAATCCCAGATCGGCCCGCTGCTTACGATCGTCGGCGCGCTCTGGCCCATCGGCTCCC
ACAACCTTCAGGGCTACTCGTTCCAGCTCTGGCAGCCGATCACCTATCTGTTCCTGCACGGAAGCTTCACCCATATCTTC
TTCAACATGTTCGCCCTGTGGATGTTCGGAACGGAGATCGAGAACTACTGGGGCACGAAAACCTTCGTCACCTACTACTT
CATCTGCGGGATCGGAGCGGCCTTCATCAACCTGCTGGCCACCATGGGCTCGCCCTATCCCACCATCGGCGCTTCGGGAG
CCATTTTCGGCGTGCTGCTGGCCTTTGCCATGATGTTTCCCGACCGCTACATCTTCCTGTACTTCCTGCTTCCGATCAAG
ACTAAGTACTTTGTCGCCGGTTATGCCCTGATCGAATTCATGTCGGGCCTCGGTAACCGGACGATGGGCAGTGGCAGTGA
AGTCGCCCACTTCGCGCATCTCGGCGGCATGCTCGTCGGCTTCATCTACATCACCATCAGGCGAAACGAGTGGACGCTCA
AACGCTTGATGAAGAACGTTTCCCTCCCGAAAAAACCGAAAGGGCCGACGCTCTGGAAAGGGGGAAAAGGGAACGAAGAG
GTTTCGGAAGCCGAAATCGACCGGATTCTCGACAAGATTTCGAGCAGAGGCTACGAATCCCTGACGGAGGAAGAAAAACG
CAAGCTTCTCAACGCAGGCAAACGCTGA

Upstream 100 bases:

>100_bases
GCAAATTCCGAACCGTACGAACAATCTTGGGCGCTTCTGAAAAACAGCTTGATGCAGAGCAACAGGTTTTCAGAAGCGCC
CTCATTGCAAACTCTGCTGA

Downstream 100 bases:

>100_bases
CCCGCCGGCAGCGGCTGCCTGAGAAATCGGCACGAGCAGACCATGAAACAGAAGAAAGAGAACCGCTTTTTCGAGCGTGC
CCGCCAAAAGGCCGAAGAAA

Product: Rhomboid family protein

Products: NA

Alternate protein names: Peptidase; Transmembrane Rhomboid Family Protein; Integral Membrane Protein; Rhomboid-Like Protein; Rhomboid Protein; Cytoplasmic Membrane Protein; Rhomboid Family Membrane Protein; Peptidase Protein; Membrane Serine Protease; GlpG Protein; S54 Family Peptidase; Rhomboid Family Protein/GlpG-Like Protein; Serine Protease; Subfamily; Rhomboid Serine Protease; Regulatory Proteins IclR

Number of amino acids: Translated: 275; Mature: 274

Protein sequence:

>275_residues
MTRYDQPYMPGGFQVMPPAIKTLIIANVAIFLFQQSQIGPLLTIVGALWPIGSHNLQGYSFQLWQPITYLFLHGSFTHIF
FNMFALWMFGTEIENYWGTKTFVTYYFICGIGAAFINLLATMGSPYPTIGASGAIFGVLLAFAMMFPDRYIFLYFLLPIK
TKYFVAGYALIEFMSGLGNRTMGSGSEVAHFAHLGGMLVGFIYITIRRNEWTLKRLMKNVSLPKKPKGPTLWKGGKGNEE
VSEAEIDRILDKISSRGYESLTEEEKRKLLNAGKR

Sequences:

>Translated_275_residues
MTRYDQPYMPGGFQVMPPAIKTLIIANVAIFLFQQSQIGPLLTIVGALWPIGSHNLQGYSFQLWQPITYLFLHGSFTHIF
FNMFALWMFGTEIENYWGTKTFVTYYFICGIGAAFINLLATMGSPYPTIGASGAIFGVLLAFAMMFPDRYIFLYFLLPIK
TKYFVAGYALIEFMSGLGNRTMGSGSEVAHFAHLGGMLVGFIYITIRRNEWTLKRLMKNVSLPKKPKGPTLWKGGKGNEE
VSEAEIDRILDKISSRGYESLTEEEKRKLLNAGKR
>Mature_274_residues
TRYDQPYMPGGFQVMPPAIKTLIIANVAIFLFQQSQIGPLLTIVGALWPIGSHNLQGYSFQLWQPITYLFLHGSFTHIFF
NMFALWMFGTEIENYWGTKTFVTYYFICGIGAAFINLLATMGSPYPTIGASGAIFGVLLAFAMMFPDRYIFLYFLLPIKT
KYFVAGYALIEFMSGLGNRTMGSGSEVAHFAHLGGMLVGFIYITIRRNEWTLKRLMKNVSLPKKPKGPTLWKGGKGNEEV
SEAEIDRILDKISSRGYESLTEEEKRKLLNAGKR

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Saccharomyces cerevisiae, GI6321538, Length=140, Percent_Identity=35, Blast_Score=72, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31031; Mature: 30900

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TRYDQPYMPGGFQVMPPAIKTLIIANVAIFLFQQSQIGPLLTIVGALWPIGSHNLQGYS
CCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCE
FQLWQPITYLFLHGSFTHIFFNMFALWMFGTEIENYWGTKTFVTYYFICGIGAAFINLLA
EEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
TMGSPYPTIGASGAIFGVLLAFAMMFPDRYIFLYFLLPIKTKYFVAGYALIEFMSGLGNR
HHCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
TMGSGSEVAHFAHLGGMLVGFIYITIRRNEWTLKRLMKNVSLPKKPKGPTLWKGGKGNEE
CCCCCHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
VSEAEIDRILDKISSRGYESLTEEEKRKLLNAGKR
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA