| Definition | Chlorobaculum parvum NCIB 8327 chromosome, complete genome. |
|---|---|
| Accession | NC_011027 |
| Length | 2,289,249 |
Click here to switch to the map view.
The map label for this gene is 193213675
Identifier: 193213675
GI number: 193213675
Start: 2242812
End: 2243831
Strand: Direct
Name: 193213675
Synonym: Cpar_2041
Alternate gene names: NA
Gene position: 2242812-2243831 (Clockwise)
Preceding gene: 193213668
Following gene: 193213678
Centisome position: 97.97
GC content: 52.94
Gene sequence:
>1020_bases ATGAAACGAAACTCTCACCTTTCATCCGCTTTCCTCTGGGCTTTTTTTCTGGCCTCGTTTTCGCTCTTCATGACCTCCTG CACCACCAAAACACAAGAGAGCAGCAAAGAAACAACCGAAGGGAAAGAAGCTGCGCCCGTCGAGGAAAAAACTGCTGAAA ATGAGAATCCTCATCCTCTGGCAGGCTCAAAATGGCGTCTTGTTGAATTCACGTCGATGGATGACGCTCAAGGGGTTCAA CGCCCGAGCGATCCGCTGCTCTATACCATGGAACTCAAGGCGGACAGCACGGTTCACATGCGCCTGAACTGTAATGTCGC AAACGGCACCTGGAAGTTCGAGCCCTCTGCCGATCCGTCGAATGGCAGTTTTGAATTCGGGCCACTCGCAACGACAAAAG CGCTGTGCCCGCCGCCGAGCATGGACGAGCTGGTTGCATCACAGGCGCAATGGGTGCGCGGTTACCTGCTGAACGATGGC AAGCTCTACCTGAGCCTCATGGCTGACGGCGGAATTTTCACCTGGGAGCCACAGGTTGAAGCCCCGTATCTGGCGAAAGC TGATGCGGCAATCGAACAGGCAGTTTTGCAGGCCTCTCCCGATTATAAAAAAGATGTTATCGGCAATGCCAAAGCCACCT ATGTCTACAGCCTTGTTGATCTCAACGATGACGGCACAGATGAAGCGATCGTCTACCTGATGGGCTCCATTTTCTGCGGT ACAGGCGGCTGCAACATGATGGTGTTTACCAAAGGGGATGACGGATACCGGCTTGTCAACGACTTTTCATTAGCTCGAAC TCCCGTGGTTATCTCTCCGGCCATGAACAACGGCTGGAATGACATCTGGAAGATGGAATCGGGCGGCGGAGAACCGTCAA ACTATGTCCGGTATGCCTTCAACGGCAAGAAGTACACCGAGAAAGAACGCAAAGGAACCGAAAGCATTCCCGAAGGCGTC GTCTGTCTGGCGGGAGATTTCGACTTTCAGAAAGGGATTCCGCTCGAACCAATTGACTGA
Upstream 100 bases:
>100_bases ATAAACATAAGACCTGCGGAATATGCAGGAACCCGGGAAGTTCATCTATCGTTCTATCAAGTACTTTACAGTTTTTGAAT GTCTGTAAAAACTTTGAAGC
Downstream 100 bases:
>100_bases GAGGCAAAAAGACCGGGGGGGTTGAAATGAAAAAAGCCGGACATGCAGCACACATCCGGCTTTTTAAACATATGATGCCT CTGCGCCTTACGGCTTCATC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 339; Mature: 339
Protein sequence:
>339_residues MKRNSHLSSAFLWAFFLASFSLFMTSCTTKTQESSKETTEGKEAAPVEEKTAENENPHPLAGSKWRLVEFTSMDDAQGVQ RPSDPLLYTMELKADSTVHMRLNCNVANGTWKFEPSADPSNGSFEFGPLATTKALCPPPSMDELVASQAQWVRGYLLNDG KLYLSLMADGGIFTWEPQVEAPYLAKADAAIEQAVLQASPDYKKDVIGNAKATYVYSLVDLNDDGTDEAIVYLMGSIFCG TGGCNMMVFTKGDDGYRLVNDFSLARTPVVISPAMNNGWNDIWKMESGGGEPSNYVRYAFNGKKYTEKERKGTESIPEGV VCLAGDFDFQKGIPLEPID
Sequences:
>Translated_339_residues MKRNSHLSSAFLWAFFLASFSLFMTSCTTKTQESSKETTEGKEAAPVEEKTAENENPHPLAGSKWRLVEFTSMDDAQGVQ RPSDPLLYTMELKADSTVHMRLNCNVANGTWKFEPSADPSNGSFEFGPLATTKALCPPPSMDELVASQAQWVRGYLLNDG KLYLSLMADGGIFTWEPQVEAPYLAKADAAIEQAVLQASPDYKKDVIGNAKATYVYSLVDLNDDGTDEAIVYLMGSIFCG TGGCNMMVFTKGDDGYRLVNDFSLARTPVVISPAMNNGWNDIWKMESGGGEPSNYVRYAFNGKKYTEKERKGTESIPEGV VCLAGDFDFQKGIPLEPID >Mature_339_residues MKRNSHLSSAFLWAFFLASFSLFMTSCTTKTQESSKETTEGKEAAPVEEKTAENENPHPLAGSKWRLVEFTSMDDAQGVQ RPSDPLLYTMELKADSTVHMRLNCNVANGTWKFEPSADPSNGSFEFGPLATTKALCPPPSMDELVASQAQWVRGYLLNDG KLYLSLMADGGIFTWEPQVEAPYLAKADAAIEQAVLQASPDYKKDVIGNAKATYVYSLVDLNDDGTDEAIVYLMGSIFCG TGGCNMMVFTKGDDGYRLVNDFSLARTPVVISPAMNNGWNDIWKMESGGGEPSNYVRYAFNGKKYTEKERKGTESIPEGV VCLAGDFDFQKGIPLEPID
Specific function: Unknown
COG id: COG3650
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37232; Mature: 37232
Theoretical pI: Translated: 4.42; Mature: 4.42
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRNSHLSSAFLWAFFLASFSLFMTSCTTKTQESSKETTEGKEAAPVEEKTAENENPHPL CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHCCCCCCCCCHHHHCCCCCCCCC AGSKWRLVEFTSMDDAQGVQRPSDPLLYTMELKADSTVHMRLNCNVANGTWKFEPSADPS CCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEEEECCEEEECCCCCCC NGSFEFGPLATTKALCPPPSMDELVASQAQWVRGYLLNDGKLYLSLMADGGIFTWEPQVE CCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHEEEEECCCEEEEEEEECCCEEEECCCCC APYLAKADAAIEQAVLQASPDYKKDVIGNAKATYVYSLVDLNDDGTDEAIVYLMGSIFCG CCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHCC TGGCNMMVFTKGDDGYRLVNDFSLARTPVVISPAMNNGWNDIWKMESGGGEPSNYVRYAF CCCCEEEEEEECCCCEEEEECCHHCCCCEEEECCCCCCCCHHEEECCCCCCCCCEEEEEE NGKKYTEKERKGTESIPEGVVCLAGDFDFQKGIPLEPID CCCCCCHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCC >Mature Secondary Structure MKRNSHLSSAFLWAFFLASFSLFMTSCTTKTQESSKETTEGKEAAPVEEKTAENENPHPL CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHCCCCCCCCCHHHHCCCCCCCCC AGSKWRLVEFTSMDDAQGVQRPSDPLLYTMELKADSTVHMRLNCNVANGTWKFEPSADPS CCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEEEECCEEEECCCCCCC NGSFEFGPLATTKALCPPPSMDELVASQAQWVRGYLLNDGKLYLSLMADGGIFTWEPQVE CCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHEEEEECCCEEEEEEEECCCEEEECCCCC APYLAKADAAIEQAVLQASPDYKKDVIGNAKATYVYSLVDLNDDGTDEAIVYLMGSIFCG CCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHCC TGGCNMMVFTKGDDGYRLVNDFSLARTPVVISPAMNNGWNDIWKMESGGGEPSNYVRYAF CCCCEEEEEEECCCCEEEEECCHHCCCCEEEECCCCCCCCHHEEECCCCCCCCCEEEEEE NGKKYTEKERKGTESIPEGVVCLAGDFDFQKGIPLEPID CCCCCCHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA