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The map label for this gene is ybbD [H]

Identifier: 193213634

GI number: 193213634

Start: 2198457

End: 2199578

Strand: Direct

Name: ybbD [H]

Synonym: Cpar_1998

Alternate gene names: 193213634

Gene position: 2198457-2199578 (Clockwise)

Preceding gene: 193213633

Following gene: 193213635

Centisome position: 96.03

GC content: 61.05

Gene sequence:

>1122_bases
ATGAAAAAGAGCCTCCTCGCGGCGCTGCTGCTTTTGCTGAGCTTCACCACCGCGCTGGCCGCGCCATCGACGCCCGACAG
CCTGTCAATCAAGATCGGCCAGATGCTCATGGTCGGCTTCAGGGGGCTCGACGCCAGCAGCGATCCGGCATTCGAGAAGG
CGCTTCGAGCTGGCCAGATCGGCGGCGTGGTGCTCTTCGATTACGACGTCCCCTCCAAATCTCCCGTGCGCAACATCGAG
TCGCCGAAGCAGGTTCGTCGGCTTACCGAAGAGCTGCAAAGCCTCGCGCCAATGCCGCTCTTCATCGCTGTCGATCAGGA
GGGCGGACGCGTCTGTCGCCTCAAACCGTCGCGCGGCTTTCCGCCAACCGTCTCCGCCGCTTACCTTGGCAGGCTGGACA
ACGCCGACAGCACCCGGCAGGCCGCTGGAACCACGGCGAAGCTGCTCAAGAGCCTCGGTATCAACATGAACCTCGCACCG
GTGGTCGATCTGAACGTCAATCCGGAAAACCCGGTTATCGGCAAGCTCGACCGGAGCTTCTCCAGCAATCCGGCGGTGGT
CGCCCGGCAGGCAAGAATCTTCGTCGATACGTTCCACCAGCAAGGAATCATCGCTGCCTTGAAGCACTTTCCTGGCCACG
GCAGTTCGACAACCGACACCCACAAAGACTTCACCGACGTTACCACCACCTGGTCAAAAACCGAACTCGAACCCTACCGG
ACGCTAATCGGCAACGGCTACAGCGACCCGGTCATGACCGCCCACGTCTTCAACGCAAAGCTCGACAGCAGCTACCCGGC
GACGCTCTCGAAAGCCACGATTGACGGCCTCCTGCGCAAGCAGCTCGGCTTCCGGGGCGTGGTCATCAGCGATGACATGC
AGATGAAAGCCATCGCCGACCGCTACGGCCTCGAACAGGCGATCCGGCTGGCGATTGACGCAGGCGTCGATGTGCTGCTC
TTCGGCAACAACGTAGGCATCTATGATCCTGAAATCGCCGAAAAAGCCAACGCCATCATCCGCCGTCTCGTTGAAAAAGG
CGACGTCACGCCCGAACGGATCGACGCCTCGTACCGGCGGATCATAGCCCTGAAACAACGAACCATCACCCCAGCACCAT
GA

Upstream 100 bases:

>100_bases
TTGAAAACGACACCATCGTGATGAAGAAACGATAACACCGAACCGCAAGCCGGACGGGGCTTTCCGAAGTTCCATCCGGC
TTGTCACTTTCCCACCCACC

Downstream 100 bases:

>100_bases
AAACCCTTTACCTCGTCCGCCACGCAAAAGCCGGCTGGCACGACCCGGCGATGGCCGACTTCGACCGCATGCTCACCAAA
CGTGGCCACAAGCAGGCTGA

Product: glycoside hydrolase family 3 domain-containing protein

Products: N-acetylglucosamin; anhydro-N-acetylmuramic acid [C]

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MKKSLLAALLLLLSFTTALAAPSTPDSLSIKIGQMLMVGFRGLDASSDPAFEKALRAGQIGGVVLFDYDVPSKSPVRNIE
SPKQVRRLTEELQSLAPMPLFIAVDQEGGRVCRLKPSRGFPPTVSAAYLGRLDNADSTRQAAGTTAKLLKSLGINMNLAP
VVDLNVNPENPVIGKLDRSFSSNPAVVARQARIFVDTFHQQGIIAALKHFPGHGSSTTDTHKDFTDVTTTWSKTELEPYR
TLIGNGYSDPVMTAHVFNAKLDSSYPATLSKATIDGLLRKQLGFRGVVISDDMQMKAIADRYGLEQAIRLAIDAGVDVLL
FGNNVGIYDPEIAEKANAIIRRLVEKGDVTPERIDASYRRIIALKQRTITPAP

Sequences:

>Translated_373_residues
MKKSLLAALLLLLSFTTALAAPSTPDSLSIKIGQMLMVGFRGLDASSDPAFEKALRAGQIGGVVLFDYDVPSKSPVRNIE
SPKQVRRLTEELQSLAPMPLFIAVDQEGGRVCRLKPSRGFPPTVSAAYLGRLDNADSTRQAAGTTAKLLKSLGINMNLAP
VVDLNVNPENPVIGKLDRSFSSNPAVVARQARIFVDTFHQQGIIAALKHFPGHGSSTTDTHKDFTDVTTTWSKTELEPYR
TLIGNGYSDPVMTAHVFNAKLDSSYPATLSKATIDGLLRKQLGFRGVVISDDMQMKAIADRYGLEQAIRLAIDAGVDVLL
FGNNVGIYDPEIAEKANAIIRRLVEKGDVTPERIDASYRRIIALKQRTITPAP
>Mature_373_residues
MKKSLLAALLLLLSFTTALAAPSTPDSLSIKIGQMLMVGFRGLDASSDPAFEKALRAGQIGGVVLFDYDVPSKSPVRNIE
SPKQVRRLTEELQSLAPMPLFIAVDQEGGRVCRLKPSRGFPPTVSAAYLGRLDNADSTRQAAGTTAKLLKSLGINMNLAP
VVDLNVNPENPVIGKLDRSFSSNPAVVARQARIFVDTFHQQGIIAALKHFPGHGSSTTDTHKDFTDVTTTWSKTELEPYR
TLIGNGYSDPVMTAHVFNAKLDSSYPATLSKATIDGLLRKQLGFRGVVISDDMQMKAIADRYGLEQAIRLAIDAGVDVLL
FGNNVGIYDPEIAEKANAIIRRLVEKGDVTPERIDASYRRIIALKQRTITPAP

Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1787350, Length=314, Percent_Identity=31.5286624203822, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1788453, Length=367, Percent_Identity=20.9809264305177, Blast_Score=68, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: NA

Molecular weight: Translated: 40441; Mature: 40441

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSLLAALLLLLSFTTALAAPSTPDSLSIKIGQMLMVGFRGLDASSDPAFEKALRAGQI
CCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHCCCCCCCCHHHHHHHHCCCC
GGVVLFDYDVPSKSPVRNIESPKQVRRLTEELQSLAPMPLFIAVDQEGGRVCRLKPSRGF
CCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEECCCCCC
PPTVSAAYLGRLDNADSTRQAAGTTAKLLKSLGINMNLAPVVDLNVNPENPVIGKLDRSF
CCCHHHHHHHCCCCCCCHHHHCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCEECCCCCC
SSNPAVVARQARIFVDTFHQQGIIAALKHFPGHGSSTTDTHKDFTDVTTTWSKTELEPYR
CCCCCEEHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHH
TLIGNGYSDPVMTAHVFNAKLDSSYPATLSKATIDGLLRKQLGFRGVVISDDMQMKAIAD
HHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHH
RYGLEQAIRLAIDAGVDVLLFGNNVGIYDPEIAEKANAIIRRLVEKGDVTPERIDASYRR
HHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
IIALKQRTITPAP
HHHHHHCCCCCCC
>Mature Secondary Structure
MKKSLLAALLLLLSFTTALAAPSTPDSLSIKIGQMLMVGFRGLDASSDPAFEKALRAGQI
CCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHCCCCCCCCHHHHHHHHCCCC
GGVVLFDYDVPSKSPVRNIESPKQVRRLTEELQSLAPMPLFIAVDQEGGRVCRLKPSRGF
CCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEECCCCCC
PPTVSAAYLGRLDNADSTRQAAGTTAKLLKSLGINMNLAPVVDLNVNPENPVIGKLDRSF
CCCHHHHHHHCCCCCCCHHHHCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCEECCCCCC
SSNPAVVARQARIFVDTFHQQGIIAALKHFPGHGSSTTDTHKDFTDVTTTWSKTELEPYR
CCCCCEEHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHH
TLIGNGYSDPVMTAHVFNAKLDSSYPATLSKATIDGLLRKQLGFRGVVISDDMQMKAIAD
HHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHH
RYGLEQAIRLAIDAGVDVLLFGNNVGIYDPEIAEKANAIIRRLVEKGDVTPERIDASYRR
HHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
IIALKQRTITPAP
HHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Cell Wall [C]

Specific reaction: Cell Wall = N-acetylglucosamin + anhydro-N-acetylmuramic acid [C]

General reaction: Hydrolyse [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]