Click here to switch to the map view.

The map label for this gene is yicO [C]

Identifier: 193213225

GI number: 193213225

Start: 1729318

End: 1730619

Strand: Direct

Name: yicO [C]

Synonym: Cpar_1580

Alternate gene names: 193213225

Gene position: 1729318-1730619 (Clockwise)

Preceding gene: 193213223

Following gene: 193213226

Centisome position: 75.54

GC content: 61.52

Gene sequence:

>1302_bases
ATGCGGAACTTCTTCGAATTCGAACGGCTCGGAACCGGTTACCGCCAGGAGTTTCTGGCGGGGCTGACCACCTTTTTCAC
CCTTTCCTACATCATCGTGGTCAATCCGGCCATCCTCGAAGCTGCGGGAATGCCGCGTGAGGCTTCGATGACCGCCACCA
TCCTGACGGCCATTTTTGGAACGGTGCTGATGGGCTTGTATGCCAAGCGCCCGTTCGCCGTCGCGCCGTACATGGGTGAG
AACGCCTTCATCGCCTACACGGTGGTCAAGACGCTCGGCTATTCGTGGCAGACGGCGCTCGGCGCGATTCTGATCAGCGG
CGTGCTCTTCACGCTCATTACGCTGACGGGCACGCGCAAATGGCTGGCCGAGGCAATTCCGATGACCCTGAAGCACAGCT
TCGCGGTGGGCATCGGACTGTTCCTCGCCTTCCTCGGTCTCTCGGACATGGGCGTCGTGGCGCTTGGCGTACCCGGCGCT
CCGGTGAAGCTCGGTGACCTGACAACCATTCCGGTACTCTGCGGACTTGGCGGACTCGTGCTGACAAGTGCGCTGCTCGT
GCGCAGAGTCACCGGCGCCCTGATGATCGGCATTGCCGCCACGACGCTGCTGATGCTCGCCCTCGGCCTGCTGAACGTTC
CGGCAAAGCCCTTCAGCCTACCCCCATCGCTTGCACCTCTTTTTTTGCAGATCGATATTGCCGGCGCCCTCACCTGGGGC
TTCATCGGGGTGATCCTGAGCGTGCTGGTCATGGACTTCGTCGATACAATGGGCACCCTCATCGGCCTGTCGGCCCGCGC
TGGCCTGCTGGACGAAAACGGTAACCTGCCGGAAATCGAGAAGCCAATGCTGGTCGATGCGCTTTCGACCACCGCCGCGG
CGCTTTTCGGCACCACCACCGCCGGCGTGTACATCGAGTCAGCATCGGGCATCGAGCAGGGCGGCAAGACCGGTTTCACA
GCACTCGTGGTCGCGGCGTTTTTCGCCCTCGCACTCTTCTTCTCGCCGATCCTGACCATCGTGCCGCCGCAGGCTTACGG
GCCGGTGCTCGTGCTGGTGGGCATGTTCATGATCGAGTCGGCGGGCCACTTCGATTTCGCCGACTACACCGAGCTGCTGC
CCGCGTTCTTGACCATCGTTATGATGCTCTTTACCTTCAACATCGGCGTCGGCATCACGATGGGCTTCATCAGCTGGGTG
CTCATCAAGGCGCTCTCGGGCAGGTTCAGCGAAATCAACACAGGCATGGCGGTGCTGGCCGCGCTGTCGCTGACCTTCTA
CCTCTTCTATCCCTACCACTAA

Upstream 100 bases:

>100_bases
CTGAAACGAATCGAGACCAAGCGGAATGGTTAACGGTAAAGATTCTATCGCATTATTCGTATTTTTCGCCATACCCGTAA
CTTGACAGCTTACAACGTTC

Downstream 100 bases:

>100_bases
GACCTGAAACCATGCTCAAAGCCAAGCTCAGAATCGTTCAGTCGGACTGCACGCTCGCCAATTTCGACGAGAACCTCGAA
AGCCACGTCAAGGCGATCGA

Product: Xanthine/uracil/vitamin C permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 433; Mature: 433

Protein sequence:

>433_residues
MRNFFEFERLGTGYRQEFLAGLTTFFTLSYIIVVNPAILEAAGMPREASMTATILTAIFGTVLMGLYAKRPFAVAPYMGE
NAFIAYTVVKTLGYSWQTALGAILISGVLFTLITLTGTRKWLAEAIPMTLKHSFAVGIGLFLAFLGLSDMGVVALGVPGA
PVKLGDLTTIPVLCGLGGLVLTSALLVRRVTGALMIGIAATTLLMLALGLLNVPAKPFSLPPSLAPLFLQIDIAGALTWG
FIGVILSVLVMDFVDTMGTLIGLSARAGLLDENGNLPEIEKPMLVDALSTTAAALFGTTTAGVYIESASGIEQGGKTGFT
ALVVAAFFALALFFSPILTIVPPQAYGPVLVLVGMFMIESAGHFDFADYTELLPAFLTIVMMLFTFNIGVGITMGFISWV
LIKALSGRFSEINTGMAVLAALSLTFYLFYPYH

Sequences:

>Translated_433_residues
MRNFFEFERLGTGYRQEFLAGLTTFFTLSYIIVVNPAILEAAGMPREASMTATILTAIFGTVLMGLYAKRPFAVAPYMGE
NAFIAYTVVKTLGYSWQTALGAILISGVLFTLITLTGTRKWLAEAIPMTLKHSFAVGIGLFLAFLGLSDMGVVALGVPGA
PVKLGDLTTIPVLCGLGGLVLTSALLVRRVTGALMIGIAATTLLMLALGLLNVPAKPFSLPPSLAPLFLQIDIAGALTWG
FIGVILSVLVMDFVDTMGTLIGLSARAGLLDENGNLPEIEKPMLVDALSTTAAALFGTTTAGVYIESASGIEQGGKTGFT
ALVVAAFFALALFFSPILTIVPPQAYGPVLVLVGMFMIESAGHFDFADYTELLPAFLTIVMMLFTFNIGVGITMGFISWV
LIKALSGRFSEINTGMAVLAALSLTFYLFYPYH
>Mature_433_residues
MRNFFEFERLGTGYRQEFLAGLTTFFTLSYIIVVNPAILEAAGMPREASMTATILTAIFGTVLMGLYAKRPFAVAPYMGE
NAFIAYTVVKTLGYSWQTALGAILISGVLFTLITLTGTRKWLAEAIPMTLKHSFAVGIGLFLAFLGLSDMGVVALGVPGA
PVKLGDLTTIPVLCGLGGLVLTSALLVRRVTGALMIGIAATTLLMLALGLLNVPAKPFSLPPSLAPLFLQIDIAGALTWG
FIGVILSVLVMDFVDTMGTLIGLSARAGLLDENGNLPEIEKPMLVDALSTTAAALFGTTTAGVYIESASGIEQGGKTGFT
ALVVAAFFALALFFSPILTIVPPQAYGPVLVLVGMFMIESAGHFDFADYTELLPAFLTIVMMLFTFNIGVGITMGFISWV
LIKALSGRFSEINTGMAVLAALSLTFYLFYPYH

Specific function: Unknown

COG id: COG2252

COG function: function code R; Permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xanthine/uracil permease family. AzgA purine transporter (TC 2.A.1.40) subfamily [H]

Homologues:

Organism=Escherichia coli, GI87082309, Length=422, Percent_Identity=40.521327014218, Blast_Score=312, Evalue=2e-86,
Organism=Escherichia coli, GI1790150, Length=433, Percent_Identity=38.568129330254, Blast_Score=289, Evalue=2e-79,
Organism=Escherichia coli, GI1790499, Length=436, Percent_Identity=35.7798165137615, Blast_Score=242, Evalue=4e-65,
Organism=Escherichia coli, GI48994909, Length=432, Percent_Identity=34.9537037037037, Blast_Score=231, Evalue=6e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006043 [H]

Pfam domain/function: PF00860 Xan_ur_permease [H]

EC number: NA

Molecular weight: Translated: 45902; Mature: 45902

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNFFEFERLGTGYRQEFLAGLTTFFTLSYIIVVNPAILEAAGMPREASMTATILTAIFG
CCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHH
TVLMGLYAKRPFAVAPYMGENAFIAYTVVKTLGYSWQTALGAILISGVLFTLITLTGTRK
HHHHHHHHCCCCEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHH
WLAEAIPMTLKHSFAVGIGLFLAFLGLSDMGVVALGVPGAPVKLGDLTTIPVLCGLGGLV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEECCCCHHHHHHHCCCHHH
LTSALLVRRVTGALMIGIAATTLLMLALGLLNVPAKPFSLPPSLAPLFLQIDIAGALTWG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHHHHHH
FIGVILSVLVMDFVDTMGTLIGLSARAGLLDENGNLPEIEKPMLVDALSTTAAALFGTTT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
AGVYIESASGIEQGGKTGFTALVVAAFFALALFFSPILTIVPPQAYGPVLVLVGMFMIES
CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHC
AGHFDFADYTELLPAFLTIVMMLFTFNIGVGITMGFISWVLIKALSGRFSEINTGMAVLA
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
ALSLTFYLFYPYH
HHHHHHHHEECCC
>Mature Secondary Structure
MRNFFEFERLGTGYRQEFLAGLTTFFTLSYIIVVNPAILEAAGMPREASMTATILTAIFG
CCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHH
TVLMGLYAKRPFAVAPYMGENAFIAYTVVKTLGYSWQTALGAILISGVLFTLITLTGTRK
HHHHHHHHCCCCEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHH
WLAEAIPMTLKHSFAVGIGLFLAFLGLSDMGVVALGVPGAPVKLGDLTTIPVLCGLGGLV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEECCCCHHHHHHHCCCHHH
LTSALLVRRVTGALMIGIAATTLLMLALGLLNVPAKPFSLPPSLAPLFLQIDIAGALTWG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHHHHHH
FIGVILSVLVMDFVDTMGTLIGLSARAGLLDENGNLPEIEKPMLVDALSTTAAALFGTTT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
AGVYIESASGIEQGGKTGFTALVVAAFFALALFFSPILTIVPPQAYGPVLVLVGMFMIES
CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHC
AGHFDFADYTELLPAFLTIVMMLFTFNIGVGITMGFISWVLIKALSGRFSEINTGMAVLA
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
ALSLTFYLFYPYH
HHHHHHHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]