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The map label for this gene is yqaB [C]

Identifier: 193213181

GI number: 193213181

Start: 1682195

End: 1682914

Strand: Direct

Name: yqaB [C]

Synonym: Cpar_1536

Alternate gene names: 193213181

Gene position: 1682195-1682914 (Clockwise)

Preceding gene: 193213180

Following gene: 193213182

Centisome position: 73.48

GC content: 55.69

Gene sequence:

>720_bases
ATGACCTCCAACGAACACCTAAACCCGACCGGCATGAGCTCTCCATCAGCACAAACGCTCGCATTCGATGTTTACGGAAC
GTTGATCGATACACACGGACTGGTATCGATGCTTGAAACGTTTGCCGGTGAAAACGCTGCCGCACTGTCCCAACTCTGGC
GGCAGAAGCAGCTTGAATACTCCTTCCGGCGAGCACTCATGAAACGCTACCGCTCTTTTGCCGAATGCACCGCAGAGGCG
CTGGAATTTGCCTGCAACACCTTTCAGTTCACGCCATCAGAACAGCAGCGCCAGGCGCTTCTTGACGGCTATCGCAGACT
GCCGGCCTTTCCGGATGTCACTGCTGGGCTTGAACGCGCGCAGGCTGCAGGATTCAGGCTCTACGCTTTTTCGAACGGAC
TGGCATCCGACGTCGAATCGGTGCTCGATCATGCCGGAGTCAGGAAATATTTTCTCGACATCGTCAGCGTCGACGAAGTC
CGCTCTTTCAAACCCGATCCTGAGGTCTACCGGCATTTCATGCAACGCGCCGGAAGCAGCGCCGAAAAAAGCTGGCTGAT
CTCCTCGAATCCCTTCGATGTGACAGGTGCACGATCGATCGGCATGCAGGCAATCTGGGTACAGCGCTCAACCGATGCCG
TATTCGATCCTTGGGAGTTCCGTCCGACAGCAATCGTGAGTAGCCTGCAGGAAATAGCTGCTGCGACAAAACAGGCCTGA

Upstream 100 bases:

>100_bases
CGCTCCGGTTCTCGTCGCGAAGAACCCTTTTCGGCAGCTTTCCTCCTCTCTTTCGCGAAGCAATTTCCCATAATCACACC
TGGGTGCCATATCCGTTTTT

Downstream 100 bases:

>100_bases
GCAATCGCTCTTTGCGGCTGAAATGAAAGTAACCTACATTGTAGCTATAGCTTTAGCGCACTCCTGACCCCCTGGCAATA
CGAAAACCCTTTCATCGATG

Product: haloacid dehalogenase, type II

Products: NA

Alternate protein names: 2-haloalkanoic acid dehalogenase II; DEHCII; Halocarboxylic acid halidohydrolase II; L-2-haloacid dehalogenase II [H]

Number of amino acids: Translated: 239; Mature: 238

Protein sequence:

>239_residues
MTSNEHLNPTGMSSPSAQTLAFDVYGTLIDTHGLVSMLETFAGENAAALSQLWRQKQLEYSFRRALMKRYRSFAECTAEA
LEFACNTFQFTPSEQQRQALLDGYRRLPAFPDVTAGLERAQAAGFRLYAFSNGLASDVESVLDHAGVRKYFLDIVSVDEV
RSFKPDPEVYRHFMQRAGSSAEKSWLISSNPFDVTGARSIGMQAIWVQRSTDAVFDPWEFRPTAIVSSLQEIAAATKQA

Sequences:

>Translated_239_residues
MTSNEHLNPTGMSSPSAQTLAFDVYGTLIDTHGLVSMLETFAGENAAALSQLWRQKQLEYSFRRALMKRYRSFAECTAEA
LEFACNTFQFTPSEQQRQALLDGYRRLPAFPDVTAGLERAQAAGFRLYAFSNGLASDVESVLDHAGVRKYFLDIVSVDEV
RSFKPDPEVYRHFMQRAGSSAEKSWLISSNPFDVTGARSIGMQAIWVQRSTDAVFDPWEFRPTAIVSSLQEIAAATKQA
>Mature_238_residues
TSNEHLNPTGMSSPSAQTLAFDVYGTLIDTHGLVSMLETFAGENAAALSQLWRQKQLEYSFRRALMKRYRSFAECTAEAL
EFACNTFQFTPSEQQRQALLDGYRRLPAFPDVTAGLERAQAAGFRLYAFSNGLASDVESVLDHAGVRKYFLDIVSVDEVR
SFKPDPEVYRHFMQRAGSSAEKSWLISSNPFDVTGARSIGMQAIWVQRSTDAVFDPWEFRPTAIVSSLQEIAAATKQA

Specific function: Catalyzes the hydrolytic dehalogenation of small (S)-2- haloalkanoic acids to yield the corresponding (R)-2- hydroxyalkanoic acids. Acts on acids of short chain lengths, C(2) to C(4), with inversion of configuration at C-2 [H]

COG id: COG1011

COG function: function code R; Predicted hydrolase (HAD superfamily)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HAD-like hydrolase superfamily. S-2- haloalkanoic acid dehalogenase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005834
- InterPro:   IPR023214
- InterPro:   IPR006388
- InterPro:   IPR006328
- InterPro:   IPR005833 [H]

Pfam domain/function: PF00702 Hydrolase [H]

EC number: =3.8.1.2 [H]

Molecular weight: Translated: 26672; Mature: 26541

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSNEHLNPTGMSSPSAQTLAFDVYGTLIDTHGLVSMLETFAGENAAALSQLWRQKQLEY
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
SFRRALMKRYRSFAECTAEALEFACNTFQFTPSEQQRQALLDGYRRLPAFPDVTAGLERA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
QAAGFRLYAFSNGLASDVESVLDHAGVRKYFLDIVSVDEVRSFKPDPEVYRHFMQRAGSS
HHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
AEKSWLISSNPFDVTGARSIGMQAIWVQRSTDAVFDPWEFRPTAIVSSLQEIAAATKQA
CCCCEEECCCCCCCCCHHHHCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TSNEHLNPTGMSSPSAQTLAFDVYGTLIDTHGLVSMLETFAGENAAALSQLWRQKQLEY
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
SFRRALMKRYRSFAECTAEALEFACNTFQFTPSEQQRQALLDGYRRLPAFPDVTAGLERA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
QAAGFRLYAFSNGLASDVESVLDHAGVRKYFLDIVSVDEVRSFKPDPEVYRHFMQRAGSS
HHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
AEKSWLISSNPFDVTGARSIGMQAIWVQRSTDAVFDPWEFRPTAIVSSLQEIAAATKQA
CCCCEEECCCCCCCCCHHHHCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1995594 [H]