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The map label for this gene is sodB [H]

Identifier: 193212804

GI number: 193212804

Start: 1267584

End: 1268186

Strand: Direct

Name: sodB [H]

Synonym: Cpar_1151

Alternate gene names: 193212804

Gene position: 1267584-1268186 (Clockwise)

Preceding gene: 193212801

Following gene: 193212806

Centisome position: 55.37

GC content: 53.07

Gene sequence:

>603_bases
ATGGCATATCAGCAACCTGCACTCCCGTACGCCGACAATGCTCTTGAACCGCATATTTCGGCCAACACCATTGGTTTTCA
CTATGGCAAGCACCATGCAGCCTACGTCAAAAATTATAATGGCCTTGTCGAAGGTACGCCGTTTGACTCAATGAGTCTTG
AAGAGGTTATCCTCAAAACGGCTGATGACGCTTCAAAGGTAGGCGTTTTCAACAATGGCGCACAGGCTTGGAACCACAGC
TTTTACTGGAACTGCCTCAGCCCGAATGGCGGCGGCGAGCCGACCGGCGACGTAGCTGCAAAAATCGTCGAAGATTTCGG
CAGCGTGGAGAAATTCAAGGAAGAGCTGAAAACCGCCGCTGCAACCCAGTTCGGCAGCGGATGGGCTTGGCTGGTACTCG
ACAATGGCACGCTCAAGGTGGTTAAAACCGGTAACGCTCAGAACCCCATGACCAGCGGCCAGACTCCCCTGCTCTGCATC
GACGTCTGGGAACACGCTTACTACCTCGATTACCAGAACCGCCGTCCCGATCATGTAGCTGCGGTCATCGACAACCTCCT
CAACTGGGAGTTCGTCAACGAAAACTACAAGGCTGCAAAATAA

Upstream 100 bases:

>100_bases
CTGATTTATTTTCCGCCCCCTGAAACTAAAAAGGTCAGAAGGCCGGTTAATGGGTTACTTCTTAACGTAGTCTGCTCAAC
CATAAAAATCAAATACTCCT

Downstream 100 bases:

>100_bases
GCCTTGACCGTCAATTCAGATCACAAAAGGCCTCCGAAAAGGGGCCTTTTGTCGTTTGGGTCGCGTTGAATACGGTTACC
ATCGGCCATCACAACCAGGG

Product: Superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 199

Protein sequence:

>200_residues
MAYQQPALPYADNALEPHISANTIGFHYGKHHAAYVKNYNGLVEGTPFDSMSLEEVILKTADDASKVGVFNNGAQAWNHS
FYWNCLSPNGGGEPTGDVAAKIVEDFGSVEKFKEELKTAAATQFGSGWAWLVLDNGTLKVVKTGNAQNPMTSGQTPLLCI
DVWEHAYYLDYQNRRPDHVAAVIDNLLNWEFVNENYKAAK

Sequences:

>Translated_200_residues
MAYQQPALPYADNALEPHISANTIGFHYGKHHAAYVKNYNGLVEGTPFDSMSLEEVILKTADDASKVGVFNNGAQAWNHS
FYWNCLSPNGGGEPTGDVAAKIVEDFGSVEKFKEELKTAAATQFGSGWAWLVLDNGTLKVVKTGNAQNPMTSGQTPLLCI
DVWEHAYYLDYQNRRPDHVAAVIDNLLNWEFVNENYKAAK
>Mature_199_residues
AYQQPALPYADNALEPHISANTIGFHYGKHHAAYVKNYNGLVEGTPFDSMSLEEVILKTADDASKVGVFNNGAQAWNHSF
YWNCLSPNGGGEPTGDVAAKIVEDFGSVEKFKEELKTAAATQFGSGWAWLVLDNGTLKVVKTGNAQNPMTSGQTPLLCID
VWEHAYYLDYQNRRPDHVAAVIDNLLNWEFVNENYKAAK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=199, Percent_Identity=47.2361809045226, Blast_Score=163, Evalue=8e-41,
Organism=Homo sapiens, GI67782305, Length=199, Percent_Identity=47.2361809045226, Blast_Score=163, Evalue=8e-41,
Organism=Homo sapiens, GI67782309, Length=199, Percent_Identity=38.6934673366834, Blast_Score=118, Evalue=4e-27,
Organism=Escherichia coli, GI1787946, Length=199, Percent_Identity=55.7788944723618, Blast_Score=228, Evalue=2e-61,
Organism=Escherichia coli, GI1790342, Length=211, Percent_Identity=44.0758293838863, Blast_Score=163, Evalue=9e-42,
Organism=Caenorhabditis elegans, GI17506561, Length=202, Percent_Identity=39.1089108910891, Blast_Score=124, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI17569479, Length=201, Percent_Identity=37.8109452736318, Blast_Score=120, Evalue=5e-28,
Organism=Saccharomyces cerevisiae, GI6321796, Length=208, Percent_Identity=37.9807692307692, Blast_Score=114, Evalue=8e-27,
Organism=Drosophila melanogaster, GI17136812, Length=204, Percent_Identity=38.2352941176471, Blast_Score=123, Evalue=7e-29,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22087; Mature: 21955

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYQQPALPYADNALEPHISANTIGFHYGKHHAAYVKNYNGLVEGTPFDSMSLEEVILKT
CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHC
ADDASKVGVFNNGAQAWNHSFYWNCLSPNGGGEPTGDVAAKIVEDFGSVEKFKEELKTAA
CCCCHHCCEECCCHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ATQFGSGWAWLVLDNGTLKVVKTGNAQNPMTSGQTPLLCIDVWEHAYYLDYQNRRPDHVA
HHCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHH
AVIDNLLNWEFVNENYKAAK
HHHHHHHCEEEECCCCCCCC
>Mature Secondary Structure 
AYQQPALPYADNALEPHISANTIGFHYGKHHAAYVKNYNGLVEGTPFDSMSLEEVILKT
CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHC
ADDASKVGVFNNGAQAWNHSFYWNCLSPNGGGEPTGDVAAKIVEDFGSVEKFKEELKTAA
CCCCHHCCEECCCHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ATQFGSGWAWLVLDNGTLKVVKTGNAQNPMTSGQTPLLCIDVWEHAYYLDYQNRRPDHVA
HHCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHH
AVIDNLLNWEFVNENYKAAK
HHHHHHHCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231; 9298645 [H]