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The map label for this gene is atpD1 [H]

Identifier: 193212719

GI number: 193212719

Start: 1173563

End: 1175089

Strand: Direct

Name: atpD1 [H]

Synonym: Cpar_1064

Alternate gene names: 193212719

Gene position: 1173563-1175089 (Clockwise)

Preceding gene: 193212718

Following gene: 193212720

Centisome position: 51.26

GC content: 62.61

Gene sequence:

>1527_bases
GTGCCTCCAAAAGAGATCGATCTGCCCAACAGAAGCGGGAGAATCGTGACCGAGCAAGTAACAAAGCCGGAACATTCGGG
AATCGTCACTTCGATCCGCGGAAGCGTGGTCGATATGCGCTTCGATGAGCTTCTGCCGTCGATCTACTCGGTCGTCAAAA
CCGGGCGAGAGATGGAGGTGGTTATCGAGATTCTCATGCAGCTTGACCGTCGCCACGTGCGAGGTATCGCCCTGACGCCG
ACCGAGGGCCTCTGCCGCGGCATGAAAGCCCTGAACACCGGCGCACCGCTCAAAGCTCCCGTCGGCAAAGGGACGCTGTC
CCGCATGTTCGACGTCTTCGGCAACGCCATCGACCGGGGCGGCCCGCTCTCCAACGTCACCTGGCGCTCGGTGCACGGCG
CGCCTCCCCCGCTCTCCCGACGCTCGACGAAAGCCGAGGTGTTCCAGACCGGCATCAAGATCATCGACCTGCTCGTGCCC
CTCGAACGCGGCGGCAAGGCCGGACTGTTCGGCGGCGCGGGCGTCGGCAAGACCGTGCTGCTGACCGAGATGATCCACAA
CATGGTGAGCACGGAGAGCGGCGTGAGCATCTTCTGCGGCATCGGCGAGCGGTGCCGCGAGGGCGAGGAGCTCTATCGCG
ACATGAGCGAGGCGGGCGTGCTCGACAACATGGTGATGGTGTTCGGCCAGATGAACGAACCGCCCGGAAGCCGCTTCCGC
GTTGGCCTTGCCGCGCTGACGATGGCCGAGTACTTTCGGGACGACCTGCATCAGGATGTGCTGCTGCTCATCGATAACAT
CTTCCGCTTCATCCAGGCCGGTTCGGAAATTTCCGGCATGACCGGCCAGATGCCCTCCCGACTCGGCTACCAGCCGACCA
TCGGCACCGAACTCTCCGCCCTCGAAGAGCGCATCGCCAACACCGGCACGGGCGCGATCACCTCGATTCAGGCGGTCTAT
GTGCCCGCCGACGACTTCACCGACCCGGCAGCGGTGCACACCTTTTCGCACCTCTCGGCCTCGCTGGTGCTGTCGCGCAA
ACGGGCGGGAGAAGGGTTCTACCCGGCGGTCGATCCGCTCTCGTCCGGCTCGAAGATGGCCGGCGAGAGCATCGTTGGTC
GCCGCCACTACGATCTGGCGCGCGAAGTGCGGCGGGTACTCGCGCAGTACGCCGAGCTGAAGGACATCATCGCCATGCTC
GGCCTTGAACAGCTCTCGGCGGAGGATCGTCGCCTTGTCGGACGGGCTCGACGGCTCGAACGATTCTTCACCCAGCCATT
TTTCACGACCGAACAGTTTTCCGGGCTCAAAGGCAAAAGTGTGCCGATTACCGATACCATCGACGGCTGCGAACGCATCC
TGCGCGACGAGTTCGAGAACTACCCGGAACGGGCGCTCTATATGATCGGCTCCATCGCGGAAGCTCAAGAGAAAGTCGAG
ATCGAAAAGAACGAGACCGCCAAGCAGCCAGAAGCGGGAACAATGACTCAAGGGTCAGCAACAGTCAAACCGGAAGGAGG
AAACTGA

Upstream 100 bases:

>100_bases
CCCCCTCGCCGAAAGCCGCAGCTTTTGACTTATCCCGGCGGATTCGCTACTATTCTTACACGGCCTGACCTTTCAAGCCA
ACCGGGCAGACCAGCCCTCT

Downstream 100 bases:

>100_bases
AATGCTTGCCGACTCGATGCATCTGAAAATCCTGCTGCCGTACAAGGTGTTCGCCGTAAAAGAGAATGTGGTGGACATCG
TGGCCGAAACGGAGAAGGGC

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta 1; F-ATPase subunit beta 1 [H]

Number of amino acids: Translated: 508; Mature: 507

Protein sequence:

>508_residues
MPPKEIDLPNRSGRIVTEQVTKPEHSGIVTSIRGSVVDMRFDELLPSIYSVVKTGREMEVVIEILMQLDRRHVRGIALTP
TEGLCRGMKALNTGAPLKAPVGKGTLSRMFDVFGNAIDRGGPLSNVTWRSVHGAPPPLSRRSTKAEVFQTGIKIIDLLVP
LERGGKAGLFGGAGVGKTVLLTEMIHNMVSTESGVSIFCGIGERCREGEELYRDMSEAGVLDNMVMVFGQMNEPPGSRFR
VGLAALTMAEYFRDDLHQDVLLLIDNIFRFIQAGSEISGMTGQMPSRLGYQPTIGTELSALEERIANTGTGAITSIQAVY
VPADDFTDPAAVHTFSHLSASLVLSRKRAGEGFYPAVDPLSSGSKMAGESIVGRRHYDLAREVRRVLAQYAELKDIIAML
GLEQLSAEDRRLVGRARRLERFFTQPFFTTEQFSGLKGKSVPITDTIDGCERILRDEFENYPERALYMIGSIAEAQEKVE
IEKNETAKQPEAGTMTQGSATVKPEGGN

Sequences:

>Translated_508_residues
MPPKEIDLPNRSGRIVTEQVTKPEHSGIVTSIRGSVVDMRFDELLPSIYSVVKTGREMEVVIEILMQLDRRHVRGIALTP
TEGLCRGMKALNTGAPLKAPVGKGTLSRMFDVFGNAIDRGGPLSNVTWRSVHGAPPPLSRRSTKAEVFQTGIKIIDLLVP
LERGGKAGLFGGAGVGKTVLLTEMIHNMVSTESGVSIFCGIGERCREGEELYRDMSEAGVLDNMVMVFGQMNEPPGSRFR
VGLAALTMAEYFRDDLHQDVLLLIDNIFRFIQAGSEISGMTGQMPSRLGYQPTIGTELSALEERIANTGTGAITSIQAVY
VPADDFTDPAAVHTFSHLSASLVLSRKRAGEGFYPAVDPLSSGSKMAGESIVGRRHYDLAREVRRVLAQYAELKDIIAML
GLEQLSAEDRRLVGRARRLERFFTQPFFTTEQFSGLKGKSVPITDTIDGCERILRDEFENYPERALYMIGSIAEAQEKVE
IEKNETAKQPEAGTMTQGSATVKPEGGN
>Mature_507_residues
PPKEIDLPNRSGRIVTEQVTKPEHSGIVTSIRGSVVDMRFDELLPSIYSVVKTGREMEVVIEILMQLDRRHVRGIALTPT
EGLCRGMKALNTGAPLKAPVGKGTLSRMFDVFGNAIDRGGPLSNVTWRSVHGAPPPLSRRSTKAEVFQTGIKIIDLLVPL
ERGGKAGLFGGAGVGKTVLLTEMIHNMVSTESGVSIFCGIGERCREGEELYRDMSEAGVLDNMVMVFGQMNEPPGSRFRV
GLAALTMAEYFRDDLHQDVLLLIDNIFRFIQAGSEISGMTGQMPSRLGYQPTIGTELSALEERIANTGTGAITSIQAVYV
PADDFTDPAAVHTFSHLSASLVLSRKRAGEGFYPAVDPLSSGSKMAGESIVGRRHYDLAREVRRVLAQYAELKDIIAMLG
LEQLSAEDRRLVGRARRLERFFTQPFFTTEQFSGLKGKSVPITDTIDGCERILRDEFENYPERALYMIGSIAEAQEKVEI
EKNETAKQPEAGTMTQGSATVKPEGGN

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=462, Percent_Identity=50.6493506493506, Blast_Score=484, Evalue=1e-137,
Organism=Homo sapiens, GI19913428, Length=348, Percent_Identity=25, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI19913426, Length=363, Percent_Identity=23.9669421487603, Blast_Score=108, Evalue=1e-23,
Organism=Homo sapiens, GI19913424, Length=326, Percent_Identity=26.0736196319018, Blast_Score=105, Evalue=1e-22,
Organism=Homo sapiens, GI50345984, Length=365, Percent_Identity=26.8493150684932, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI4757810, Length=365, Percent_Identity=26.8493150684932, Blast_Score=103, Evalue=3e-22,
Organism=Escherichia coli, GI1790170, Length=458, Percent_Identity=48.6899563318777, Blast_Score=454, Evalue=1e-129,
Organism=Escherichia coli, GI1790172, Length=346, Percent_Identity=28.0346820809249, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI1788251, Length=304, Percent_Identity=32.8947368421053, Blast_Score=123, Evalue=3e-29,
Organism=Caenorhabditis elegans, GI25144756, Length=481, Percent_Identity=48.6486486486487, Blast_Score=468, Evalue=1e-132,
Organism=Caenorhabditis elegans, GI17510931, Length=346, Percent_Identity=25.4335260115607, Blast_Score=120, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI17570191, Length=352, Percent_Identity=25.2840909090909, Blast_Score=113, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI17565854, Length=329, Percent_Identity=25.531914893617, Blast_Score=105, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI71988080, Length=392, Percent_Identity=25.5102040816327, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI71988063, Length=392, Percent_Identity=25.5102040816327, Blast_Score=103, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI71988074, Length=346, Percent_Identity=24.8554913294798, Blast_Score=86, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6322581, Length=456, Percent_Identity=49.3421052631579, Blast_Score=471, Evalue=1e-133,
Organism=Saccharomyces cerevisiae, GI6319603, Length=356, Percent_Identity=27.8089887640449, Blast_Score=114, Evalue=3e-26,
Organism=Saccharomyces cerevisiae, GI6319370, Length=407, Percent_Identity=25.3071253071253, Blast_Score=94, Evalue=4e-20,
Organism=Saccharomyces cerevisiae, GI6320016, Length=274, Percent_Identity=26.2773722627737, Blast_Score=81, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24638766, Length=469, Percent_Identity=48.8272921108742, Blast_Score=470, Evalue=1e-132,
Organism=Drosophila melanogaster, GI28574560, Length=460, Percent_Identity=48.4782608695652, Blast_Score=451, Evalue=1e-127,
Organism=Drosophila melanogaster, GI281361666, Length=349, Percent_Identity=24.6418338108883, Blast_Score=114, Evalue=1e-25,
Organism=Drosophila melanogaster, GI24646341, Length=349, Percent_Identity=24.6418338108883, Blast_Score=114, Evalue=1e-25,
Organism=Drosophila melanogaster, GI17136796, Length=349, Percent_Identity=24.6418338108883, Blast_Score=114, Evalue=1e-25,
Organism=Drosophila melanogaster, GI20129479, Length=315, Percent_Identity=28.2539682539683, Blast_Score=109, Evalue=4e-24,
Organism=Drosophila melanogaster, GI24583992, Length=328, Percent_Identity=26.5243902439024, Blast_Score=108, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24583988, Length=328, Percent_Identity=26.5243902439024, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24583986, Length=328, Percent_Identity=26.5243902439024, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24583984, Length=328, Percent_Identity=26.5243902439024, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24658560, Length=344, Percent_Identity=25.8720930232558, Blast_Score=92, Evalue=6e-19,
Organism=Drosophila melanogaster, GI24638768, Length=90, Percent_Identity=41.1111111111111, Blast_Score=72, Evalue=1e-12,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017691
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 55540; Mature: 55409

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPKEIDLPNRSGRIVTEQVTKPEHSGIVTSIRGSVVDMRFDELLPSIYSVVKTGREMEV
CCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHH
VIEILMQLDRRHVRGIALTPTEGLCRGMKALNTGAPLKAPVGKGTLSRMFDVFGNAIDRG
HHHHHHHHHHHHHCCEEECCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
GPLSNVTWRSVHGAPPPLSRRSTKAEVFQTGIKIIDLLVPLERGGKAGLFGGAGVGKTVL
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
LTEMIHNMVSTESGVSIFCGIGERCREGEELYRDMSEAGVLDNMVMVFGQMNEPPGSRFR
HHHHHHHHHCCCCCCEEEECCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
VGLAALTMAEYFRDDLHQDVLLLIDNIFRFIQAGSEISGMTGQMPSRLGYQPTIGTELSA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCHHHH
LEERIANTGTGAITSIQAVYVPADDFTDPAAVHTFSHLSASLVLSRKRAGEGFYPAVDPL
HHHHHHCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
SSGSKMAGESIVGRRHYDLAREVRRVLAQYAELKDIIAMLGLEQLSAEDRRLVGRARRLE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
RFFTQPFFTTEQFSGLKGKSVPITDTIDGCERILRDEFENYPERALYMIGSIAEAQEKVE
HHHHCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
IEKNETAKQPEAGTMTQGSATVKPEGGN
CCCCCCCCCCCCCCCCCCCEEECCCCCC
>Mature Secondary Structure 
PPKEIDLPNRSGRIVTEQVTKPEHSGIVTSIRGSVVDMRFDELLPSIYSVVKTGREMEV
CCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHH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CCCCCCCCCCCCCCCCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12093901 [H]