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The map label for this gene is ybhR [H]

Identifier: 193212706

GI number: 193212706

Start: 1159054

End: 1160211

Strand: Direct

Name: ybhR [H]

Synonym: Cpar_1051

Alternate gene names: 193212706

Gene position: 1159054-1160211 (Clockwise)

Preceding gene: 193212705

Following gene: 193212707

Centisome position: 50.63

GC content: 58.81

Gene sequence:

>1158_bases
ATGAAGGATCGTATCCAAAAGATAAAAGCATCACTCGCCGTCGTCGGCTATCTCCTGCAAAAGGAGTTTTTGCAGATTTT
CCGCAACAAGGGGATGCTGCCGATCATGTTCGTCATGCCCTTCATCCAGCTCATCATCCTCTCCAACGCGGCCACCTTCG
ACGTGCCTGAAGTGCCGTTCCATTTACAGGATTTCGACCGCACGGCGCTATCGGATCGGCTCGTCAAGCGTTTCACCTCA
ACGGGTTATTTCAAGATGACAGGGGAGTCGTTCCGGCAGGGGAACGCCATCGGCGTGCTCACCGGTAACCGGGCGGACAT
GGTGCTGACGATTCCGAAGGATTTCGAGCAGGAGATGATGACCACCGGCCACGCGCAGGTTCAGCTCCTGATCGACGCCG
AGGACGGCTTCACTGCGGGCGTGATTCAGGGCTACGCCAACGACATCGTGGTCGCCTTCAACCGCGACCTGCCGGAGCTG
CTGCCGCAACTCGCCGGAACGCAGACCGTGCTGCCGGTGATCGATATCCGGCCCAGAGGCTGGTACAATCCGGAGCTGGC
CTACATCGACTACATGGTGCCGGGCGTGCTGGTGGTGCTGGTGACGCTGATCGGGCTGTTCCTGTCGGGCATGAACGTCG
TGCGGGAAAAGGAGATCGGCACCATCGACCAGATCAACGTCACGCCGATCAGGCGCTGGCAGTTCATCACCGGCAAGCTG
CTGCCGTTCTGGATCATCGGCCTCGGCGAGCTGACCGTTGGCCTCGTCATTGCCCGCGTCCTGTTCCACGTGCCAATGCT
TGGGCATTATTACGTGATCTACCTCGTCGCGGCGATCTACCTGCTCGTGGTGCTCGGCATGGGGCTGTTGATTTCAACCG
TCACCGAAAGCCAGCAGCAGGCGATGTTCATCGCCTGGTTTTTCATCGTGATTTTCGTCTTGCTCAGCGGCCTCTTCACG
CCGATCCAGAGCATGCCTCACTGGGCCCAGAACCTCACCCTCGCCAACCCCGTCCGCCATTTCGTTGACATCATGCGAAG
GGCAATGCTGAAAGGGTCGAATCTTGGCGATATTGCAAAGCCATTCGGAATTCTCGGAGCGGAGGCTGTGGTGATGCTGG
CGCTGGCGGTGAACCGGTATCGGAAGACTTCGGAGTGA

Upstream 100 bases:

>100_bases
GCGCAGGCATCGCCGTGCTCTGGAAGGAGACCCTCATCCTGCTCGTCATGACCGTGCTTTTCATGGCGGCCAGCGTTCGG
AAATTCAGCGAGAGGTTGCA

Downstream 100 bases:

>100_bases
GAGGGGGGGGGCTCCTGTGTGTTTTGAAGAATTAATAGATAATGTTCGAGGTAGGAGAAAAAAAGATGTACGATTTCAAG
ACATTGTCTGCCTACGACTT

Product: ABC-2 type transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 385; Mature: 385

Protein sequence:

>385_residues
MKDRIQKIKASLAVVGYLLQKEFLQIFRNKGMLPIMFVMPFIQLIILSNAATFDVPEVPFHLQDFDRTALSDRLVKRFTS
TGYFKMTGESFRQGNAIGVLTGNRADMVLTIPKDFEQEMMTTGHAQVQLLIDAEDGFTAGVIQGYANDIVVAFNRDLPEL
LPQLAGTQTVLPVIDIRPRGWYNPELAYIDYMVPGVLVVLVTLIGLFLSGMNVVREKEIGTIDQINVTPIRRWQFITGKL
LPFWIIGLGELTVGLVIARVLFHVPMLGHYYVIYLVAAIYLLVVLGMGLLISTVTESQQQAMFIAWFFIVIFVLLSGLFT
PIQSMPHWAQNLTLANPVRHFVDIMRRAMLKGSNLGDIAKPFGILGAEAVVMLALAVNRYRKTSE

Sequences:

>Translated_385_residues
MKDRIQKIKASLAVVGYLLQKEFLQIFRNKGMLPIMFVMPFIQLIILSNAATFDVPEVPFHLQDFDRTALSDRLVKRFTS
TGYFKMTGESFRQGNAIGVLTGNRADMVLTIPKDFEQEMMTTGHAQVQLLIDAEDGFTAGVIQGYANDIVVAFNRDLPEL
LPQLAGTQTVLPVIDIRPRGWYNPELAYIDYMVPGVLVVLVTLIGLFLSGMNVVREKEIGTIDQINVTPIRRWQFITGKL
LPFWIIGLGELTVGLVIARVLFHVPMLGHYYVIYLVAAIYLLVVLGMGLLISTVTESQQQAMFIAWFFIVIFVLLSGLFT
PIQSMPHWAQNLTLANPVRHFVDIMRRAMLKGSNLGDIAKPFGILGAEAVVMLALAVNRYRKTSE
>Mature_385_residues
MKDRIQKIKASLAVVGYLLQKEFLQIFRNKGMLPIMFVMPFIQLIILSNAATFDVPEVPFHLQDFDRTALSDRLVKRFTS
TGYFKMTGESFRQGNAIGVLTGNRADMVLTIPKDFEQEMMTTGHAQVQLLIDAEDGFTAGVIQGYANDIVVAFNRDLPEL
LPQLAGTQTVLPVIDIRPRGWYNPELAYIDYMVPGVLVVLVTLIGLFLSGMNVVREKEIGTIDQINVTPIRRWQFITGKL
LPFWIIGLGELTVGLVIARVLFHVPMLGHYYVIYLVAAIYLLVVLGMGLLISTVTESQQQAMFIAWFFIVIFVLLSGLFT
PIQSMPHWAQNLTLANPVRHFVDIMRRAMLKGSNLGDIAKPFGILGAEAVVMLALAVNRYRKTSE

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1787010, Length=338, Percent_Identity=30.7692307692308, Blast_Score=180, Evalue=2e-46,
Organism=Escherichia coli, GI1787011, Length=341, Percent_Identity=27.8592375366569, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI48994943, Length=344, Percent_Identity=26.1627906976744, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI226510979, Length=380, Percent_Identity=23.1578947368421, Blast_Score=103, Evalue=2e-23,
Organism=Drosophila melanogaster, GI24650855, Length=367, Percent_Identity=22.8882833787466, Blast_Score=70, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24650853, Length=367, Percent_Identity=22.8882833787466, Blast_Score=70, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 43168; Mature: 43168

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDRIQKIKASLAVVGYLLQKEFLQIFRNKGMLPIMFVMPFIQLIILSNAATFDVPEVPF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
HLQDFDRTALSDRLVKRFTSTGYFKMTGESFRQGNAIGVLTGNRADMVLTIPKDFEQEMM
CHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHCCCEEEEEECCCCCEEEECCCHHHHHHH
TTGHAQVQLLIDAEDGFTAGVIQGYANDIVVAFNRDLPELLPQLAGTQTVLPVIDIRPRG
HCCCCEEEEEEECCCCCHHHHHHHCCCCEEEEECCCHHHHHHHHCCCCEEEEEEEECCCC
WYNPELAYIDYMVPGVLVVLVTLIGLFLSGMNVVREKEIGTIDQINVTPIRRWQFITGKL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
LPFWIIGLGELTVGLVIARVLFHVPMLGHYYVIYLVAAIYLLVVLGMGLLISTVTESQQQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMFIAWFFIVIFVLLSGLFTPIQSMPHWAQNLTLANPVRHFVDIMRRAMLKGSNLGDIAK
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHH
PFGILGAEAVVMLALAVNRYRKTSE
HHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKDRIQKIKASLAVVGYLLQKEFLQIFRNKGMLPIMFVMPFIQLIILSNAATFDVPEVPF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
HLQDFDRTALSDRLVKRFTSTGYFKMTGESFRQGNAIGVLTGNRADMVLTIPKDFEQEMM
CHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHCCCEEEEEECCCCCEEEECCCHHHHHHH
TTGHAQVQLLIDAEDGFTAGVIQGYANDIVVAFNRDLPELLPQLAGTQTVLPVIDIRPRG
HCCCCEEEEEEECCCCCHHHHHHHCCCCEEEEECCCHHHHHHHHCCCCEEEEEEEECCCC
WYNPELAYIDYMVPGVLVVLVTLIGLFLSGMNVVREKEIGTIDQINVTPIRRWQFITGKL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
LPFWIIGLGELTVGLVIARVLFHVPMLGHYYVIYLVAAIYLLVVLGMGLLISTVTESQQQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMFIAWFFIVIFVLLSGLFTPIQSMPHWAQNLTLANPVRHFVDIMRRAMLKGSNLGDIAK
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHH
PFGILGAEAVVMLALAVNRYRKTSE
HHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]