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The map label for this gene is ybhS [H]

Identifier: 193212705

GI number: 193212705

Start: 1157948

End: 1159057

Strand: Direct

Name: ybhS [H]

Synonym: Cpar_1050

Alternate gene names: 193212705

Gene position: 1157948-1159057 (Clockwise)

Preceding gene: 193212704

Following gene: 193212706

Centisome position: 50.58

GC content: 59.01

Gene sequence:

>1110_bases
ATGATGAAACGGTTCATCGCATTCATCAGGAAAGAATTCTACCACATCGTGCGTGACCGGCGGACGGCGGCAATTCTGTT
CGGGATGCCGATTCTTCAGTTGCTGCTCTTCGGCTACGCGATCCGCAACGAGGTCTCGGAAGTCCGCACGGGCATTCTCG
ATATGTCGCACGACACCGTCACCGAGGCGATTACCGACAAGCTGTTCTCGTCGGGCACCTTCATCTTTGCCGGTAACCTG
CAGAGCGAGAAAGAGATAGCACCAGCTTTCGCGGCGGGGCAGATGAACGAGGTGGTGGTCTTCGAGCCGGACTTCGCCAG
GCGGCTGCTAAAGGATGGCGTTGCGCAGATGCAGGTCGTCACGGACGGTTCCGATCCCAACGTGTCGCGCATCGTGACCG
GCTACACGCAGGCGGTGGTGCGCGATTATCTTGCCGAACAGACGGACGGATCAGCCCGGCAGGCGGGCGTCGAGGCGGTG
CCGCTGATGATGTTCAATCCATCGCTCAAGAGCGTCTATCTCTTCGTGCCGGGGCTGATGGCGATGATCCTGATGCTCGT
GTCGGCGCTCATGACCTCCATCAGTATCACGCGCGAAAAGGAGAGCGGCACGATGGAGCTGCTCTTGGTTTCCTCGCTGC
GTCCGGTGCAGATCATCGTCGGCAAGGTGGTGCCGTACCTGTTGCTCTCGTTCGTGAACGTCATCACCGTGGTGTCGCTG
GCCTACTTTGTCTTCGGCGTGCCGTGCCGGGGCAACATCGCGCTGCTGCTGGTCGAGTCGCTGCTCTTCATCATGACCGC
CCTCTCGCTCGGCATCATGATCTCCACTATAACCAATTCGCAGCAGGTGGCGATGATGATTTCGCTCGCCGGTCTGCTCC
TGCCGACGGTGCTGCTTTCGGGTTTCATCTTCCCGATTCACAGTATGCCGTGGCCGTTGCAGGCAATCAGCAACATCATT
CCCGCACGTTGGTATCTCGTTATCGTGCGCGGGATTATGCTCAAGGGCGCAGGCATCGCCGTGCTCTGGAAGGAGACCCT
CATCCTGCTCGTCATGACCGTGCTTTTCATGGCGGCCAGCGTTCGGAAATTCAGCGAGAGGTTGCAATGA

Upstream 100 bases:

>100_bases
CCAATTTCTTTTGATGATTGATTTCAATTTTTGGTCATCACAACAACATCTATCAATTAGAAAGCAGCCCCAACATAGAC
TTATGAATGACAGATAAAGC

Downstream 100 bases:

>100_bases
AGGATCGTATCCAAAAGATAAAAGCATCACTCGCCGTCGTCGGCTATCTCCTGCAAAAGGAGTTTTTGCAGATTTTCCGC
AACAAGGGGATGCTGCCGAT

Product: ABC-2 type transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 369

Protein sequence:

>369_residues
MMKRFIAFIRKEFYHIVRDRRTAAILFGMPILQLLLFGYAIRNEVSEVRTGILDMSHDTVTEAITDKLFSSGTFIFAGNL
QSEKEIAPAFAAGQMNEVVVFEPDFARRLLKDGVAQMQVVTDGSDPNVSRIVTGYTQAVVRDYLAEQTDGSARQAGVEAV
PLMMFNPSLKSVYLFVPGLMAMILMLVSALMTSISITREKESGTMELLLVSSLRPVQIIVGKVVPYLLLSFVNVITVVSL
AYFVFGVPCRGNIALLLVESLLFIMTALSLGIMISTITNSQQVAMMISLAGLLLPTVLLSGFIFPIHSMPWPLQAISNII
PARWYLVIVRGIMLKGAGIAVLWKETLILLVMTVLFMAASVRKFSERLQ

Sequences:

>Translated_369_residues
MMKRFIAFIRKEFYHIVRDRRTAAILFGMPILQLLLFGYAIRNEVSEVRTGILDMSHDTVTEAITDKLFSSGTFIFAGNL
QSEKEIAPAFAAGQMNEVVVFEPDFARRLLKDGVAQMQVVTDGSDPNVSRIVTGYTQAVVRDYLAEQTDGSARQAGVEAV
PLMMFNPSLKSVYLFVPGLMAMILMLVSALMTSISITREKESGTMELLLVSSLRPVQIIVGKVVPYLLLSFVNVITVVSL
AYFVFGVPCRGNIALLLVESLLFIMTALSLGIMISTITNSQQVAMMISLAGLLLPTVLLSGFIFPIHSMPWPLQAISNII
PARWYLVIVRGIMLKGAGIAVLWKETLILLVMTVLFMAASVRKFSERLQ
>Mature_369_residues
MMKRFIAFIRKEFYHIVRDRRTAAILFGMPILQLLLFGYAIRNEVSEVRTGILDMSHDTVTEAITDKLFSSGTFIFAGNL
QSEKEIAPAFAAGQMNEVVVFEPDFARRLLKDGVAQMQVVTDGSDPNVSRIVTGYTQAVVRDYLAEQTDGSARQAGVEAV
PLMMFNPSLKSVYLFVPGLMAMILMLVSALMTSISITREKESGTMELLLVSSLRPVQIIVGKVVPYLLLSFVNVITVVSL
AYFVFGVPCRGNIALLLVESLLFIMTALSLGIMISTITNSQQVAMMISLAGLLLPTVLLSGFIFPIHSMPWPLQAISNII
PARWYLVIVRGIMLKGAGIAVLWKETLILLVMTVLFMAASVRKFSERLQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1787011, Length=339, Percent_Identity=32.4483775811209, Blast_Score=190, Evalue=1e-49,
Organism=Escherichia coli, GI1787010, Length=368, Percent_Identity=30.4347826086957, Blast_Score=189, Evalue=2e-49,
Organism=Escherichia coli, GI48994943, Length=365, Percent_Identity=30.1369863013699, Blast_Score=163, Evalue=2e-41,
Organism=Escherichia coli, GI226510979, Length=322, Percent_Identity=25.4658385093168, Blast_Score=94, Evalue=2e-20,
Organism=Drosophila melanogaster, GI85725260, Length=373, Percent_Identity=21.1796246648794, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI85725262, Length=373, Percent_Identity=21.1796246648794, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24650855, Length=365, Percent_Identity=21.3698630136986, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24650853, Length=365, Percent_Identity=21.3698630136986, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 40753; Mature: 40753

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
5.7 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKRFIAFIRKEFYHIVRDRRTAAILFGMPILQLLLFGYAIRNEVSEVRTGILDMSHDTV
CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
TEAITDKLFSSGTFIFAGNLQSEKEIAPAFAAGQMNEVVVFEPDFARRLLKDGVAQMQVV
HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCCCCCCEEEECCHHHHHHHHCCHHHEEEE
TDGSDPNVSRIVTGYTQAVVRDYLAEQTDGSARQAGVEAVPLMMFNPSLKSVYLFVPGLM
ECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCEEHEEECCCHHHHHHHHHHHH
AMILMLVSALMTSISITREKESGTMELLLVSSLRPVQIIVGKVVPYLLLSFVNVITVVSL
HHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AYFVFGVPCRGNIALLLVESLLFIMTALSLGIMISTITNSQQVAMMISLAGLLLPTVLLS
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
GFIFPIHSMPWPLQAISNIIPARWYLVIVRGIMLKGAGIAVLWKETLILLVMTVLFMAAS
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
VRKFSERLQ
HHHHHHHCC
>Mature Secondary Structure
MMKRFIAFIRKEFYHIVRDRRTAAILFGMPILQLLLFGYAIRNEVSEVRTGILDMSHDTV
CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
TEAITDKLFSSGTFIFAGNLQSEKEIAPAFAAGQMNEVVVFEPDFARRLLKDGVAQMQVV
HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCCCCCCEEEECCHHHHHHHHCCHHHEEEE
TDGSDPNVSRIVTGYTQAVVRDYLAEQTDGSARQAGVEAVPLMMFNPSLKSVYLFVPGLM
ECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCEEHEEECCCHHHHHHHHHHHH
AMILMLVSALMTSISITREKESGTMELLLVSSLRPVQIIVGKVVPYLLLSFVNVITVVSL
HHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AYFVFGVPCRGNIALLLVESLLFIMTALSLGIMISTITNSQQVAMMISLAGLLLPTVLLS
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
GFIFPIHSMPWPLQAISNIIPARWYLVIVRGIMLKGAGIAVLWKETLILLVMTVLFMAAS
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
VRKFSERLQ
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]