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The map label for this gene is ygaF [H]

Identifier: 193212328

GI number: 193212328

Start: 709157

End: 709627

Strand: Direct

Name: ygaF [H]

Synonym: Cpar_0661

Alternate gene names: 193212328

Gene position: 709157-709627 (Clockwise)

Preceding gene: 193212326

Following gene: 193212329

Centisome position: 30.98

GC content: 48.2

Gene sequence:

>471_bases
ATGGAATTACTGCAAGCAGGCCAGAAGGCTCCGGAATTCAAGACAATCGATCAGGACGGCAATCCGGTATCCCTTAAAGA
TTACCGCGGTCGCAAGGTCATTCTCTATTTCTACCCCAAAGACAATACCCCGGGCTGTACCAAGGAGGCTTGTGCTTTTC
GAGACAATTTGCCTAACTTTAAAAAGATAGATGCCGAAGTGCTCGGGGTGAGCGTCGATGGACAGAAAGCCCATCGTAAG
TTCGCCGATAAATTCGAGTTACCCTTCACCCTTGTGGTCGATGAGGATAAAAAAATTGTCGAGGCATACGGCGTTTGGGG
ATTGAAAAAGTTCATGGGCAAAGAGTACATGGGCACCAATCGTGTGACCTATCTGATTGATGAACAGGGCGTTATCGAAA
AGGTGTGGCCGAAGGTCAAACCGGAAATACATGCAGCGGAAGTGCTTGAGTGGTTGCAGCAAAAAGCGTGA

Upstream 100 bases:

>100_bases
TGCTGGGCCTTTGCAAACACCCCGAAACTTTTTGCCGGCATATCGGATTCTCCCAAGAAAAGCGGCACTCAATCGTGTAA
TTGAAAAGAATATCAAAGCT

Downstream 100 bases:

>100_bases
TACATGGATAACGAATTTGAAATGCTCAAAGCGGGCAAGTTGCTGATTGCTTCGGCTAATCTGCTTGAATCCAATTTCAA
GCGGACCGTTCTGCTTATGT

Product: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen

Products: NA

Alternate protein names: Bacterioferritin comigratory protein; Thioredoxin reductase [H]

Number of amino acids: Translated: 156; Mature: 156

Protein sequence:

>156_residues
MELLQAGQKAPEFKTIDQDGNPVSLKDYRGRKVILYFYPKDNTPGCTKEACAFRDNLPNFKKIDAEVLGVSVDGQKAHRK
FADKFELPFTLVVDEDKKIVEAYGVWGLKKFMGKEYMGTNRVTYLIDEQGVIEKVWPKVKPEIHAAEVLEWLQQKA

Sequences:

>Translated_156_residues
MELLQAGQKAPEFKTIDQDGNPVSLKDYRGRKVILYFYPKDNTPGCTKEACAFRDNLPNFKKIDAEVLGVSVDGQKAHRK
FADKFELPFTLVVDEDKKIVEAYGVWGLKKFMGKEYMGTNRVTYLIDEQGVIEKVWPKVKPEIHAAEVLEWLQQKA
>Mature_156_residues
MELLQAGQKAPEFKTIDQDGNPVSLKDYRGRKVILYFYPKDNTPGCTKEACAFRDNLPNFKKIDAEVLGVSVDGQKAHRK
FADKFELPFTLVVDEDKKIVEAYGVWGLKKFMGKEYMGTNRVTYLIDEQGVIEKVWPKVKPEIHAAEVLEWLQQKA

Specific function: Unknown

COG id: COG1225

COG function: function code O; Peroxiredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI32189392, Length=141, Percent_Identity=36.8794326241135, Blast_Score=76, Evalue=9e-15,
Organism=Homo sapiens, GI4505591, Length=140, Percent_Identity=32.1428571428571, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI32455266, Length=140, Percent_Identity=32.1428571428571, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI32455264, Length=140, Percent_Identity=32.1428571428571, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI33188454, Length=77, Percent_Identity=44.1558441558442, Blast_Score=67, Evalue=9e-12,
Organism=Escherichia coli, GI1788825, Length=156, Percent_Identity=48.0769230769231, Blast_Score=156, Evalue=5e-40,
Organism=Caenorhabditis elegans, GI193204376, Length=122, Percent_Identity=36.8852459016393, Blast_Score=67, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI32565831, Length=122, Percent_Identity=36.8852459016393, Blast_Score=67, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17554494, Length=136, Percent_Identity=31.6176470588235, Blast_Score=64, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6322180, Length=109, Percent_Identity=36.697247706422, Blast_Score=79, Evalue=4e-16,
Organism=Drosophila melanogaster, GI17738015, Length=144, Percent_Identity=34.7222222222222, Blast_Score=76, Evalue=9e-15,
Organism=Drosophila melanogaster, GI21357347, Length=145, Percent_Identity=32.4137931034483, Blast_Score=70, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24656348, Length=137, Percent_Identity=34.3065693430657, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI17864676, Length=137, Percent_Identity=34.3065693430657, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: 920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000866
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF00578 AhpC-TSA [H]

EC number: =1.11.1.15 [H]

Molecular weight: Translated: 17869; Mature: 17869

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELLQAGQKAPEFKTIDQDGNPVSLKDYRGRKVILYFYPKDNTPGCTKEACAFRDNLPNF
CCHHHCCCCCCCCEEECCCCCEEEEECCCCCEEEEEEEECCCCCCCCHHHHHHHCCCCCC
KKIDAEVLGVSVDGQKAHRKFADKFELPFTLVVDEDKKIVEAYGVWGLKKFMGKEYMGTN
HHCCCEEEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCHHHHHHHCCCCCCCC
RVTYLIDEQGVIEKVWPKVKPEIHAAEVLEWLQQKA
CEEEEECCCCCHHHHCCCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MELLQAGQKAPEFKTIDQDGNPVSLKDYRGRKVILYFYPKDNTPGCTKEACAFRDNLPNF
CCHHHCCCCCCCCEEECCCCCEEEEECCCCCEEEEEEEECCCCCCCCHHHHHHHCCCCCC
KKIDAEVLGVSVDGQKAHRKFADKFELPFTLVVDEDKKIVEAYGVWGLKKFMGKEYMGTN
HHCCCEEEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCHHHHHHHCCCCCCCC
RVTYLIDEQGVIEKVWPKVKPEIHAAEVLEWLQQKA
CEEEEECCCCCHHHHCCCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]