| Definition | Chlorobaculum parvum NCIB 8327 chromosome, complete genome. |
|---|---|
| Accession | NC_011027 |
| Length | 2,289,249 |
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The map label for this gene is oppD [C]
Identifier: 193212323
GI number: 193212323
Start: 703551
End: 704543
Strand: Direct
Name: oppD [C]
Synonym: Cpar_0656
Alternate gene names: 193212323
Gene position: 703551-704543 (Clockwise)
Preceding gene: 193212322
Following gene: 193212324
Centisome position: 30.73
GC content: 60.12
Gene sequence:
>993_bases ATGGGCGCGGGCGCATGGTTATTATTTATGGAGCATCTTCTCGAACTCAAGGATCTCAAAACCTGGTATCGTACCGATAA CGGCATCGCCAAAGCTGTTGATGGCGTCTCTTTTTCCCTCGCCAAGAACCGGATTCTCGGCATTATCGGGGAGTCGGGAT CGGGCAAATCGGTGACGGCGCTTTCGATCATGCGGCTGGTACCGATGCCGCCGGGCTACTTCGCGGGCGGGGATATTCTC TGGAAAAACCGCAGTCTCGTCAAGGCTTCCGAGGAAGAGATGCGCAAGATTCGTGGCAACGAGATTGCCATGATTTTTCA GGAGCCGATGAGCTCGCTGAACCCGGTCTACAACTGCGGCGACCAGATCATGGAGCAGATTCTGAACCATCGAGACGTGA GCAAGTCCGAGGCGCGGCGGCAGGCGGTCGAGCTGCTGAACCTGGTCGGTATCCCGAATCCTTCGGAGCGCATCGACTCC TACCCGCACGAGATGTCGGGCGGTATGCGCCAGCGGGTGATGATTGCGATGGCGCTTTCGTGCGGCCCGGAGCTTTTGAT TGCCGACGAACCGACGACGGCGCTTGATGTGACCGTGCAGGCGCAGATTCTGGAGCTGATCGGCAAGCTGCGCGAGGAGC GGGGGATGAGCGTGATGCTCATCACGCACGACTTCGGAGTCGTGGCCGAGCTGTGCGAAGAGGTCGTCGTCATGTACGCT TCGCGCATTGTCGAAACTGGTACGGTGCGGCACATTTTCGAGAATCCGCTCCATCCTTACACGCAGGGGCTGCTCAAGTC GATTCCGCGCCTTGGTGCGAAAAAGGAGCGGCTGAACGTGATCGAGGGCAACGTGCCGAGCGCCACGCGCTTGCCGGAAG GGTGCCGGTTCGCCGGACGCTGTCCGCTGGCCGACGCGCACTGCCGACAGGCGCAACCGCCACTCGTCGAATATGAACAG GGCCATCAGGCGGCCTGCTGGAAAATCGCCTGA
Upstream 100 bases:
>100_bases GTGAAAATTGTGCAAATTGCACTGTTGCGACCTGTTGCGGCCGCAATTGTCAAAGTTCTCTGTCGTACATTCACCTTCAT CAAAGCTGCGCTTTTCGCCA
Downstream 100 bases:
>100_bases ACGCAACGAAAGCTATCAAAGCAGCATGTCTGACACTACCATTTTGATCGTCGAAGATGACCGGAACCTTGCCGGGCTCC TGAAGTACAACCTCGAAAAA
Product: oligopeptide/dipeptide ABC transporter ATPase subunit
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 330; Mature: 329
Protein sequence:
>330_residues MGAGAWLLFMEHLLELKDLKTWYRTDNGIAKAVDGVSFSLAKNRILGIIGESGSGKSVTALSIMRLVPMPPGYFAGGDIL WKNRSLVKASEEEMRKIRGNEIAMIFQEPMSSLNPVYNCGDQIMEQILNHRDVSKSEARRQAVELLNLVGIPNPSERIDS YPHEMSGGMRQRVMIAMALSCGPELLIADEPTTALDVTVQAQILELIGKLREERGMSVMLITHDFGVVAELCEEVVVMYA SRIVETGTVRHIFENPLHPYTQGLLKSIPRLGAKKERLNVIEGNVPSATRLPEGCRFAGRCPLADAHCRQAQPPLVEYEQ GHQAACWKIA
Sequences:
>Translated_330_residues MGAGAWLLFMEHLLELKDLKTWYRTDNGIAKAVDGVSFSLAKNRILGIIGESGSGKSVTALSIMRLVPMPPGYFAGGDIL WKNRSLVKASEEEMRKIRGNEIAMIFQEPMSSLNPVYNCGDQIMEQILNHRDVSKSEARRQAVELLNLVGIPNPSERIDS YPHEMSGGMRQRVMIAMALSCGPELLIADEPTTALDVTVQAQILELIGKLREERGMSVMLITHDFGVVAELCEEVVVMYA SRIVETGTVRHIFENPLHPYTQGLLKSIPRLGAKKERLNVIEGNVPSATRLPEGCRFAGRCPLADAHCRQAQPPLVEYEQ GHQAACWKIA >Mature_329_residues GAGAWLLFMEHLLELKDLKTWYRTDNGIAKAVDGVSFSLAKNRILGIIGESGSGKSVTALSIMRLVPMPPGYFAGGDILW KNRSLVKASEEEMRKIRGNEIAMIFQEPMSSLNPVYNCGDQIMEQILNHRDVSKSEARRQAVELLNLVGIPNPSERIDSY PHEMSGGMRQRVMIAMALSCGPELLIADEPTTALDVTVQAQILELIGKLREERGMSVMLITHDFGVVAELCEEVVVMYAS RIVETGTVRHIFENPLHPYTQGLLKSIPRLGAKKERLNVIEGNVPSATRLPEGCRFAGRCPLADAHCRQAQPPLVEYEQG HQAACWKIA
Specific function: Probably part of a binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for energy coupling to the transport system [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI9665248, Length=249, Percent_Identity=24.8995983935743, Blast_Score=73, Evalue=5e-13, Organism=Homo sapiens, GI148612844, Length=252, Percent_Identity=27.7777777777778, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI255708477, Length=252, Percent_Identity=27.7777777777778, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI42741659, Length=224, Percent_Identity=28.125, Blast_Score=70, Evalue=4e-12, Organism=Homo sapiens, GI9961252, Length=224, Percent_Identity=27.6785714285714, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI4505771, Length=224, Percent_Identity=27.6785714285714, Blast_Score=67, Evalue=3e-11, Organism=Homo sapiens, GI9961250, Length=224, Percent_Identity=27.6785714285714, Blast_Score=65, Evalue=6e-11, Organism=Escherichia coli, GI48994883, Length=318, Percent_Identity=48.7421383647799, Blast_Score=312, Evalue=2e-86, Organism=Escherichia coli, GI1789963, Length=314, Percent_Identity=48.4076433121019, Blast_Score=311, Evalue=3e-86, Organism=Escherichia coli, GI1787759, Length=315, Percent_Identity=44.1269841269841, Blast_Score=280, Evalue=8e-77, Organism=Escherichia coli, GI145693107, Length=269, Percent_Identity=52.0446096654275, Blast_Score=270, Evalue=8e-74, Organism=Escherichia coli, GI1788506, Length=257, Percent_Identity=48.6381322957198, Blast_Score=248, Evalue=5e-67, Organism=Escherichia coli, GI1789962, Length=324, Percent_Identity=40.1234567901235, Blast_Score=234, Evalue=4e-63, Organism=Escherichia coli, GI1787500, Length=321, Percent_Identity=39.2523364485981, Blast_Score=227, Evalue=6e-61, Organism=Escherichia coli, GI1787548, Length=322, Percent_Identity=36.6459627329193, Blast_Score=210, Evalue=1e-55, Organism=Escherichia coli, GI1787758, Length=326, Percent_Identity=34.6625766871166, Blast_Score=186, Evalue=2e-48, Organism=Escherichia coli, GI48994997, Length=257, Percent_Identity=36.9649805447471, Blast_Score=154, Evalue=9e-39, Organism=Escherichia coli, GI1789890, Length=235, Percent_Identity=38.2978723404255, Blast_Score=154, Evalue=1e-38, Organism=Escherichia coli, GI1786398, Length=259, Percent_Identity=33.2046332046332, Blast_Score=135, Evalue=3e-33, Organism=Escherichia coli, GI1787547, Length=267, Percent_Identity=31.0861423220974, Blast_Score=131, Evalue=7e-32, Organism=Escherichia coli, GI1789891, Length=217, Percent_Identity=33.6405529953917, Blast_Score=119, Evalue=4e-28, Organism=Escherichia coli, GI1789032, Length=242, Percent_Identity=29.7520661157025, Blast_Score=112, Evalue=2e-26, Organism=Escherichia coli, GI1787029, Length=256, Percent_Identity=30.859375, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI1788225, Length=255, Percent_Identity=29.4117647058824, Blast_Score=107, Evalue=8e-25, Organism=Escherichia coli, GI87081834, Length=223, Percent_Identity=29.5964125560538, Blast_Score=99, Evalue=4e-22, Organism=Escherichia coli, GI1788644, Length=185, Percent_Identity=34.0540540540541, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1790162, Length=253, Percent_Identity=24.5059288537549, Blast_Score=94, Evalue=2e-20, Organism=Escherichia coli, GI1786703, Length=236, Percent_Identity=30.0847457627119, Blast_Score=94, Evalue=2e-20, Organism=Escherichia coli, GI1786872, Length=258, Percent_Identity=28.6821705426357, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1787712, Length=325, Percent_Identity=26.7692307692308, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1787089, Length=235, Percent_Identity=30.6382978723404, Blast_Score=90, Evalue=3e-19, Organism=Escherichia coli, GI1788450, Length=238, Percent_Identity=30.672268907563, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI1787105, Length=240, Percent_Identity=30.8333333333333, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI87081791, Length=266, Percent_Identity=28.9473684210526, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1789672, Length=260, Percent_Identity=27.3076923076923, Blast_Score=84, Evalue=9e-18, Organism=Escherichia coli, GI1787370, Length=259, Percent_Identity=26.2548262548263, Blast_Score=81, Evalue=8e-17, Organism=Escherichia coli, GI1790739, Length=259, Percent_Identity=28.957528957529, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1788761, Length=263, Percent_Identity=25.0950570342205, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1786563, Length=246, Percent_Identity=28.8617886178862, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1786345, Length=217, Percent_Identity=28.5714285714286, Blast_Score=80, Evalue=3e-16, Organism=Escherichia coli, GI87081709, Length=246, Percent_Identity=23.5772357723577, Blast_Score=80, Evalue=3e-16, Organism=Escherichia coli, GI1790190, Length=227, Percent_Identity=28.6343612334802, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1789991, Length=240, Percent_Identity=27.0833333333333, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1789873, Length=203, Percent_Identity=29.064039408867, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI1786319, Length=245, Percent_Identity=26.530612244898, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI87082267, Length=251, Percent_Identity=27.0916334661355, Blast_Score=69, Evalue=5e-13, Organism=Escherichia coli, GI1789586, Length=259, Percent_Identity=23.5521235521236, Blast_Score=68, Evalue=1e-12, Organism=Escherichia coli, GI1790467, Length=239, Percent_Identity=24.2677824267782, Blast_Score=68, Evalue=1e-12, Organism=Escherichia coli, GI1787164, Length=208, Percent_Identity=28.3653846153846, Blast_Score=68, Evalue=1e-12, Organism=Escherichia coli, GI1786803, Length=243, Percent_Identity=23.4567901234568, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1789593, Length=242, Percent_Identity=26.4462809917355, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1786654, Length=243, Percent_Identity=24.6913580246914, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI48995001, Length=210, Percent_Identity=25.7142857142857, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1787112, Length=259, Percent_Identity=26.2548262548263, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1788165, Length=230, Percent_Identity=25.6521739130435, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1789864, Length=236, Percent_Identity=24.1525423728814, Blast_Score=62, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17541710, Length=224, Percent_Identity=29.0178571428571, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI115534520, Length=229, Percent_Identity=28.82096069869, Blast_Score=68, Evalue=8e-12, Organism=Caenorhabditis elegans, GI193208177, Length=224, Percent_Identity=26.3392857142857, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17558664, Length=237, Percent_Identity=25.7383966244726, Blast_Score=65, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17543740, Length=232, Percent_Identity=26.7241379310345, Blast_Score=64, Evalue=8e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=259, Percent_Identity=27.4131274131274, Blast_Score=80, Evalue=7e-16, Organism=Saccharomyces cerevisiae, GI6323217, Length=222, Percent_Identity=27.9279279279279, Blast_Score=64, Evalue=3e-11, Organism=Drosophila melanogaster, GI28574150, Length=212, Percent_Identity=24.0566037735849, Blast_Score=68, Evalue=8e-12, Organism=Drosophila melanogaster, GI116007328, Length=212, Percent_Identity=24.0566037735849, Blast_Score=68, Evalue=8e-12, Organism=Drosophila melanogaster, GI24641565, Length=216, Percent_Identity=27.7777777777778, Blast_Score=64, Evalue=1e-10,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 36533; Mature: 36402
Theoretical pI: Translated: 6.71; Mature: 6.71
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 6.7 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 6.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGAGAWLLFMEHLLELKDLKTWYRTDNGIAKAVDGVSFSLAKNRILGIIGESGSGKSVTA CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHCCEEEEEECCCCCCCHHH LSIMRLVPMPPGYFAGGDILWKNRSLVKASEEEMRKIRGNEIAMIFQEPMSSLNPVYNCG HHHHHHHCCCCCCCCCCEEEECCCCHHHCCHHHHHHHCCCCEEEEHHHHHHHCCHHHCCH DQIMEQILNHRDVSKSEARRQAVELLNLVGIPNPSERIDSYPHEMSGGMRQRVMIAMALS HHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHCCCHHHHHHHHHHHH CGPELLIADEPTTALDVTVQAQILELIGKLREERGMSVMLITHDFGVVAELCEEVVVMYA CCCEEEEECCCCCEEEHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHH SRIVETGTVRHIFENPLHPYTQGLLKSIPRLGAKKERLNVIEGNVPSATRLPEGCRFAGR HHHHHCCHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC CPLADAHCRQAQPPLVEYEQGHQAACWKIA CCCCHHHHHCCCCCCCCCCCCCCCEEEECC >Mature Secondary Structure GAGAWLLFMEHLLELKDLKTWYRTDNGIAKAVDGVSFSLAKNRILGIIGESGSGKSVTA CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHCCEEEEEECCCCCCCHHH LSIMRLVPMPPGYFAGGDILWKNRSLVKASEEEMRKIRGNEIAMIFQEPMSSLNPVYNCG HHHHHHHCCCCCCCCCCEEEECCCCHHHCCHHHHHHHCCCCEEEEHHHHHHHCCHHHCCH DQIMEQILNHRDVSKSEARRQAVELLNLVGIPNPSERIDSYPHEMSGGMRQRVMIAMALS HHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHCCCHHHHHHHHHHHH CGPELLIADEPTTALDVTVQAQILELIGKLREERGMSVMLITHDFGVVAELCEEVVVMYA CCCEEEEECCCCCEEEHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHH SRIVETGTVRHIFENPLHPYTQGLLKSIPRLGAKKERLNVIEGNVPSATRLPEGCRFAGR HHHHHCCHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC CPLADAHCRQAQPPLVEYEQGHQAACWKIA CCCCHHHHHCCCCCCCCCCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8796346; 9163424 [H]