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The map label for this gene is omp16 [H]

Identifier: 193212308

GI number: 193212308

Start: 687071

End: 687397

Strand: Direct

Name: omp16 [H]

Synonym: Cpar_0641

Alternate gene names: 193212308

Gene position: 687071-687397 (Clockwise)

Preceding gene: 193212307

Following gene: 193212309

Centisome position: 30.01

GC content: 54.13

Gene sequence:

>327_bases
ATGCTTGGAGATATTTTCTTCGATTTTGATCGTTCCATTATCACTCCTGAAAGCCAGGCACAGCTGAGGGACAATGCCGA
GTGGATGGCTCAGAACAAGAGCAAGAGCCTCGTGTGCGAGGGGCATTGCGACGAGCGCGGAACCGCGGAATACAACATGG
CTCTCGGTGAGCGCAGGGCGGAGTCGGCCAAAGAGTCACTGATGAGTCTCGGCGTGAGCGGGGATCGTCTTTCCACGATC
AGCTATGGAGAGGAAAAACCGTTCGCAATCGGCCATGACGAGGCGGCCTGGTCACAGAACAGAAGAGTGCATTTCGTAGA
GAAATAA

Upstream 100 bases:

>100_bases
CGGCGCTTGCTGTTGTCACTATCCGTATAACAAGCAAGCCGCTCCTCCTCCGCCTGTCGCTTCGGCACCAGCTCCGGCAC
CAGCACCTGTGAAATCCGTC

Downstream 100 bases:

>100_bases
TGATTTGATGTTGATTATCCGGAGAGTCTGCGGGCTCTCCGGTTTTTTTGCTGATAAACGCTCAACAAATTGAGAGGAAC
AGTATGAGACACACATTACC

Product: peptidoglycan-associated lipoprotein

Products: NA

Alternate protein names: 16.5 kDa minor OMP; 16 kDa OMP; Minor outer membrane protein omp16 [H]

Number of amino acids: Translated: 108; Mature: 108

Protein sequence:

>108_residues
MLGDIFFDFDRSIITPESQAQLRDNAEWMAQNKSKSLVCEGHCDERGTAEYNMALGERRAESAKESLMSLGVSGDRLSTI
SYGEEKPFAIGHDEAAWSQNRRVHFVEK

Sequences:

>Translated_108_residues
MLGDIFFDFDRSIITPESQAQLRDNAEWMAQNKSKSLVCEGHCDERGTAEYNMALGERRAESAKESLMSLGVSGDRLSTI
SYGEEKPFAIGHDEAAWSQNRRVHFVEK
>Mature_108_residues
MLGDIFFDFDRSIITPESQAQLRDNAEWMAQNKSKSLVCEGHCDERGTAEYNMALGERRAESAKESLMSLGVSGDRLSTI
SYGEEKPFAIGHDEAAWSQNRRVHFVEK

Specific function: Thought To Play A Role In Bacterial Envelope Integrity. Very Strongly Associated With The Peptidoglycan. [C]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=102, Percent_Identity=48.0392156862745, Blast_Score=106, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 12187; Mature: 12187

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGDIFFDFDRSIITPESQAQLRDNAEWMAQNKSKSLVCEGHCDERGTAEYNMALGERRA
CCCCEEEECCCCEECCCCHHHHHCCHHHHHCCCCCCEEECCCCCCCCCCEEHHHHHHHHH
ESAKESLMSLGVSGDRLSTISYGEEKPFAIGHDEAAWSQNRRVHFVEK
HHHHHHHHHCCCCCCCEEEECCCCCCCEEECCCCCCCCCCCEEEEECC
>Mature Secondary Structure
MLGDIFFDFDRSIITPESQAQLRDNAEWMAQNKSKSLVCEGHCDERGTAEYNMALGERRA
CCCCEEEECCCCEECCCCHHHHHCCHHHHHCCCCCCEEECCCCCCCCCCEEHHHHHHHHH
ESAKESLMSLGVSGDRLSTISYGEEKPFAIGHDEAAWSQNRRVHFVEK
HHHHHHHHHCCCCCCCEEEECCCCCCCEEECCCCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8063379; 10456959 [H]