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The map label for this gene is 193212048

Identifier: 193212048

GI number: 193212048

Start: 402937

End: 403344

Strand: Direct

Name: 193212048

Synonym: Cpar_0377

Alternate gene names: NA

Gene position: 402937-403344 (Clockwise)

Preceding gene: 193212047

Following gene: 193212054

Centisome position: 17.6

GC content: 55.64

Gene sequence:

>408_bases
ATGATCTATCTGCTCGACACCAACATCTGCATCTACATTATCAACCAGAAACCGCCTCACGTTCTCGAACGCTTTCGCCG
CGAGAGGTTGGGAGATATTGCCATATCGAGCGTTACGGCTTCGGAGCTGACTTTTGGCGTCGTCAAAAGCGGTTCAGAGA
AGAACCGGCAAGCGCTGGCTTTGTTCTTTGCTCCACTCGAAATCCTGCCGTTCGATGCTTCCGTGATCTGGCATTACGGA
GAGATCAGAAGCGACCTCGAAAAGCGCGGCACTCCGATCGGCTCCCTCGACACCATGATCGCCGCCCACGCCAGAGCGCT
CGGCGCAGTGCTGGTAACGAACAACGTCAGGGAGTTCAGCAGGGTTGAAGGATTACGGGTGGAGAACTGGGCGGAGTTGT
CTGGGTGA

Upstream 100 bases:

>100_bases
AGCCTTGGGATATGCTCGAAGCGGCTTTGAACGAGTTTGAACCCGGCTTTCAGCTTGTGCGTGAGCAGCCGGAGACGCAA
AGCCGCGAGGAGATCAAGGG

Downstream 100 bases:

>100_bases
TGCTGGAAATATCTCGAAGAGGGCATAGTGGCGGTGCGAATCGCGATAGAGATAAAGTACACGGCTGGAGTGCAGAACGG
CAGAAGGGTGAGGGTCTGGA

Product: PilT protein domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MIYLLDTNICIYIINQKPPHVLERFRRERLGDIAISSVTASELTFGVVKSGSEKNRQALALFFAPLEILPFDASVIWHYG
EIRSDLEKRGTPIGSLDTMIAAHARALGAVLVTNNVREFSRVEGLRVENWAELSG

Sequences:

>Translated_135_residues
MIYLLDTNICIYIINQKPPHVLERFRRERLGDIAISSVTASELTFGVVKSGSEKNRQALALFFAPLEILPFDASVIWHYG
EIRSDLEKRGTPIGSLDTMIAAHARALGAVLVTNNVREFSRVEGLRVENWAELSG
>Mature_135_residues
MIYLLDTNICIYIINQKPPHVLERFRRERLGDIAISSVTASELTFGVVKSGSEKNRQALALFFAPLEILPFDASVIWHYG
EIRSDLEKRGTPIGSLDTMIAAHARALGAVLVTNNVREFSRVEGLRVENWAELSG

Specific function: Unknown

COG id: COG1487

COG function: function code R; Predicted nucleic acid-binding protein, contains PIN domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.nodosus virulence-associated protein C (vapC) [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002716
- InterPro:   IPR006596 [H]

Pfam domain/function: PF01850 PIN [H]

EC number: NA

Molecular weight: Translated: 15084; Mature: 15084

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYLLDTNICIYIINQKPPHVLERFRRERLGDIAISSVTASELTFGVVKSGSEKNRQALA
CEEEEECCEEEEEECCCCHHHHHHHHHHHHCCHHHHHCHHHHHHHHHHCCCCCCCHHEEE
LFFAPLEILPFDASVIWHYGEIRSDLEKRGTPIGSLDTMIAAHARALGAVLVTNNVREFS
EEEECHHEECCCHHEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEEECCHHHHH
RVEGLRVENWAELSG
HHCCCCCCCCCCCCC
>Mature Secondary Structure
MIYLLDTNICIYIINQKPPHVLERFRRERLGDIAISSVTASELTFGVVKSGSEKNRQALA
CEEEEECCEEEEEECCCCHHHHHHHHHHHHCCHHHHHCHHHHHHHHHHCCCCCCCHHEEE
LFFAPLEILPFDASVIWHYGEIRSDLEKRGTPIGSLDTMIAAHARALGAVLVTNNVREFS
EEEECHHEECCCHHEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEEECCHHHHH
RVEGLRVENWAELSG
HHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]