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The map label for this gene is 193211760

Identifier: 193211760

GI number: 193211760

Start: 98480

End: 99271

Strand: Direct

Name: 193211760

Synonym: Cpar_0085

Alternate gene names: NA

Gene position: 98480-99271 (Clockwise)

Preceding gene: 193211759

Following gene: 193211761

Centisome position: 4.3

GC content: 53.54

Gene sequence:

>792_bases
ATGCGCATAACCCTCGAACTTTCGCATCGCCGTTCGTTTGTGACGGTGCCGATCAATCACTCCTCCCTGATCTCTTCCCT
GATCTATAACGTCATCGACAGGAGTTCGAGCGAGTATGCGGAGCGGTTGCATGAGCAGGGATACCGGTTGGAGAATCGGG
CGTTCAAGTTGTTTACCTTTTCGCCGCTGAATCCGGGGCATCACCGTAAATGGGTGATGCACGAAAACGGGACGATGAGT
ACCGGTGAAAAGAGGCTCTATCTGACAATCTCCTCACCGAAAGAAGAGTTCATCGAGCATCTGATTCTTGGCCTGCTGCA
CGAGCCGTTTGTTTCAGTGGGCAAGGAGCGCTTCAGAGTGGAGACGGTCAGGAAGCTCGATGCGCCTCTGTTTTCAGGCG
ATATGCGATTCGTGATGCTTTCGCCGCTGGTGTGTGCGACAAAGAGCGAAGCGGATCAGTATCCCCAATATCTGTTTCCG
GGCGATCCTGATTTCAAGCGGGTGCTGGTAGCCAACCTTTGCCGGAAGTACGAGGTTCTGCACGGCAAGCCGATTGCCTG
CGACGAAAATGATGTCATGTTCGAGCTTGATCGGGATTATGTGGCTAAGGTACATGGCAAGGTGCAGAAGCTGATTACCC
TGAAAGAGGGGCGGAGCGACGAGTCAAAGGTAAAGGGTACGCTTGCGCCGTTTCGTTTGGTAGCTCCAACGGAATTGATC
GAGGTCGGCTACGAATGCGGCTTCGGCGAGAAGAATGCCCAAGGGTTCGGCATGGTCAAGGCGATCAATTGA

Upstream 100 bases:

>100_bases
GGTTAATCAATGAGTATAAGCAATCTCTATCCTTTTGCTCGCTTAACGAAAATCTTGAGCTTTACAAGCCTTAACCAATC
GCTGAAAAGCGCCCTCACCC

Downstream 100 bases:

>100_bases
CAAACATGCCCCATTTATAATAACTCAGGGTTGGAGGCGTTTCGGTGGCTTTATACAGTCTCTCGATGTTTTTGGCAGAA
AGTTACCAACTCTATTTGCA

Product: CRISPR-associated protein Cas6

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MRITLELSHRRSFVTVPINHSSLISSLIYNVIDRSSSEYAERLHEQGYRLENRAFKLFTFSPLNPGHHRKWVMHENGTMS
TGEKRLYLTISSPKEEFIEHLILGLLHEPFVSVGKERFRVETVRKLDAPLFSGDMRFVMLSPLVCATKSEADQYPQYLFP
GDPDFKRVLVANLCRKYEVLHGKPIACDENDVMFELDRDYVAKVHGKVQKLITLKEGRSDESKVKGTLAPFRLVAPTELI
EVGYECGFGEKNAQGFGMVKAIN

Sequences:

>Translated_263_residues
MRITLELSHRRSFVTVPINHSSLISSLIYNVIDRSSSEYAERLHEQGYRLENRAFKLFTFSPLNPGHHRKWVMHENGTMS
TGEKRLYLTISSPKEEFIEHLILGLLHEPFVSVGKERFRVETVRKLDAPLFSGDMRFVMLSPLVCATKSEADQYPQYLFP
GDPDFKRVLVANLCRKYEVLHGKPIACDENDVMFELDRDYVAKVHGKVQKLITLKEGRSDESKVKGTLAPFRLVAPTELI
EVGYECGFGEKNAQGFGMVKAIN
>Mature_263_residues
MRITLELSHRRSFVTVPINHSSLISSLIYNVIDRSSSEYAERLHEQGYRLENRAFKLFTFSPLNPGHHRKWVMHENGTMS
TGEKRLYLTISSPKEEFIEHLILGLLHEPFVSVGKERFRVETVRKLDAPLFSGDMRFVMLSPLVCATKSEADQYPQYLFP
GDPDFKRVLVANLCRKYEVLHGKPIACDENDVMFELDRDYVAKVHGKVQKLITLKEGRSDESKVKGTLAPFRLVAPTELI
EVGYECGFGEKNAQGFGMVKAIN

Specific function: Unknown

COG id: COG1583

COG function: function code L; Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010156
- InterPro:   IPR002743 [H]

Pfam domain/function: PF01881 DUF57 [H]

EC number: NA

Molecular weight: Translated: 30065; Mature: 30065

Theoretical pI: Translated: 8.32; Mature: 8.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRITLELSHRRSFVTVPINHSSLISSLIYNVIDRSSSEYAERLHEQGYRLENRAFKLFTF
CEEEEEECCCCEEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEECCCEEEEEEE
SPLNPGHHRKWVMHENGTMSTGEKRLYLTISSPKEEFIEHLILGLLHEPFVSVGKERFRV
CCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ETVRKLDAPLFSGDMRFVMLSPLVCATKSEADQYPQYLFPGDPDFKRVLVANLCRKYEVL
HHHHHHCCCCCCCCEEEEEECCCHHCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
HGKPIACDENDVMFELDRDYVAKVHGKVQKLITLKEGRSDESKVKGTLAPFRLVAPTELI
CCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCEEEECCHHHH
EVGYECGFGEKNAQGFGMVKAIN
HHCHHCCCCCCCCCCCEEEEECC
>Mature Secondary Structure
MRITLELSHRRSFVTVPINHSSLISSLIYNVIDRSSSEYAERLHEQGYRLENRAFKLFTF
CEEEEEECCCCEEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEECCCEEEEEEE
SPLNPGHHRKWVMHENGTMSTGEKRLYLTISSPKEEFIEHLILGLLHEPFVSVGKERFRV
CCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ETVRKLDAPLFSGDMRFVMLSPLVCATKSEADQYPQYLFPGDPDFKRVLVANLCRKYEVL
HHHHHHCCCCCCCCEEEEEECCCHHCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
HGKPIACDENDVMFELDRDYVAKVHGKVQKLITLKEGRSDESKVKGTLAPFRLVAPTELI
CCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCEEEECCHHHH
EVGYECGFGEKNAQGFGMVKAIN
HHCHHCCCCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]