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The map label for this gene is yfdE [H]

Identifier: 192291585

GI number: 192291585

Start: 3459218

End: 3460360

Strand: Reverse

Name: yfdE [H]

Synonym: Rpal_3212

Alternate gene names: 192291585

Gene position: 3460360-3459218 (Counterclockwise)

Preceding gene: 192291587

Following gene: 192291584

Centisome position: 60.24

GC content: 67.37

Gene sequence:

>1143_bases
ATGGGTGGACCGCTCGCCGGCATCAAAGTGATCGAGATCGCACAGGCGATCGCCGGGCCGATGGCCGGTATGATCCTCGG
CGATATGGGAGCCGAGGTGATCAAGGTCGAGAAGCACGACGGCGGCGACGATGCTCGGCATTGGGGCCCGCCCTTCGTCG
ACGGCGACTCCCTGCTGTTTCACACCTACAACCGCAACAAGCGCTCGGTGACGCTGGACATCAAGAACCCGGACGATGTC
GCGCGGCTCAAACAGCTTGTCCAGGATGCGGACATCCTGATTCAGAACCTGCGCTCGGGCGTGGTCGCTTCGTGCGGCAT
CGGACCCGACGTGATGTGCGCGGTCAATCCGCGGCTGATCTATTGCTCGGTGTGGGCGTTCGGCAAAGCCGGTCCGCTGA
GCAAGGAGCCGGGCTTCGATCCGCTGCTGCAGGCCTATGGCGGGGTGATGTCGCTCACCGGCGGTCCCGAGCATCCGCCG
ACCTTCTGCGCGCCGCCGATCAACGATCGCGCCACCGCGCAGTGGTGCGTGATCGGCGCGCTGGCAGCGCTGCAGCAGCG
CCACGTCACCGGCAAGGGTTGCGTGATCGATACCTCGCTGTTCGACACGGCAGTCGGCTGGGTCGACATGTCGCTCAGCG
GCTACCTGCTCGACGGCGAGCCGCCGGTGCGCCATGGCACCGCCAGCGGCACGCTGGCGCCGTATCAGGTGTTCGAGACC
GCTGACCGTCCGATTGTGATCGCCGCCGGCAACGACCGGCTGTTCGCGCGCTGTGCCGATGTGCTCGGCCATCCGGAGTG
GAGCACCGACCATCGCTTTGCGCGGGTGCGCGACCGGCAGGCGCATCGCCCCGTCCTGATCCCGCTGATGCAGGAGGTGC
TGAGGACCCGCGGCGCAACCGATTGGCTCGCTGCCTTCAAAAGCGCGGGCGTGCCGGTGAGTCCGGTCAATGACATCGCC
GAGCTTGCCGCCACCGAACAGCTCGCCGCGGCCGATCTGTTGCGCACGATGCCGGACACCGGCCTCAAGGTCGCCGGCCT
GCCGATCCTGTTCGACGGCCAGCGGCCAGATCCGGAGCTCGCCACGCCCAAGCTCGGCGCACACAACCATGAGGTGCTGG
GAAACCGTGCCGCGGCCGAATAG

Upstream 100 bases:

>100_bases
GTCACCATTGCACGCTCTGCTCCTGCCAGACACTTGCAATTTGCCTCGCACCCCTGAAACAGTGCGCGCCAATAGACATA
ACACGAAATCGGAGACCGCA

Downstream 100 bases:

>100_bases
GGCGACGTGCGGGCCCGGGCCGGCGAGGGGCCATCAAAACCACGTCATCGCCGGACGACTTTCGCATGTTGCGCTTTCTC
CGTCATCGCAGCGGTCTAGG

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 380; Mature: 379

Protein sequence:

>380_residues
MGGPLAGIKVIEIAQAIAGPMAGMILGDMGAEVIKVEKHDGGDDARHWGPPFVDGDSLLFHTYNRNKRSVTLDIKNPDDV
ARLKQLVQDADILIQNLRSGVVASCGIGPDVMCAVNPRLIYCSVWAFGKAGPLSKEPGFDPLLQAYGGVMSLTGGPEHPP
TFCAPPINDRATAQWCVIGALAALQQRHVTGKGCVIDTSLFDTAVGWVDMSLSGYLLDGEPPVRHGTASGTLAPYQVFET
ADRPIVIAAGNDRLFARCADVLGHPEWSTDHRFARVRDRQAHRPVLIPLMQEVLRTRGATDWLAAFKSAGVPVSPVNDIA
ELAATEQLAAADLLRTMPDTGLKVAGLPILFDGQRPDPELATPKLGAHNHEVLGNRAAAE

Sequences:

>Translated_380_residues
MGGPLAGIKVIEIAQAIAGPMAGMILGDMGAEVIKVEKHDGGDDARHWGPPFVDGDSLLFHTYNRNKRSVTLDIKNPDDV
ARLKQLVQDADILIQNLRSGVVASCGIGPDVMCAVNPRLIYCSVWAFGKAGPLSKEPGFDPLLQAYGGVMSLTGGPEHPP
TFCAPPINDRATAQWCVIGALAALQQRHVTGKGCVIDTSLFDTAVGWVDMSLSGYLLDGEPPVRHGTASGTLAPYQVFET
ADRPIVIAAGNDRLFARCADVLGHPEWSTDHRFARVRDRQAHRPVLIPLMQEVLRTRGATDWLAAFKSAGVPVSPVNDIA
ELAATEQLAAADLLRTMPDTGLKVAGLPILFDGQRPDPELATPKLGAHNHEVLGNRAAAE
>Mature_379_residues
GGPLAGIKVIEIAQAIAGPMAGMILGDMGAEVIKVEKHDGGDDARHWGPPFVDGDSLLFHTYNRNKRSVTLDIKNPDDVA
RLKQLVQDADILIQNLRSGVVASCGIGPDVMCAVNPRLIYCSVWAFGKAGPLSKEPGFDPLLQAYGGVMSLTGGPEHPPT
FCAPPINDRATAQWCVIGALAALQQRHVTGKGCVIDTSLFDTAVGWVDMSLSGYLLDGEPPVRHGTASGTLAPYQVFETA
DRPIVIAAGNDRLFARCADVLGHPEWSTDHRFARVRDRQAHRPVLIPLMQEVLRTRGATDWLAAFKSAGVPVSPVNDIAE
LAATEQLAAADLLRTMPDTGLKVAGLPILFDGQRPDPELATPKLGAHNHEVLGNRAAAE

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=373, Percent_Identity=34.0482573726542, Blast_Score=241, Evalue=8e-64,
Organism=Homo sapiens, GI300863124, Length=328, Percent_Identity=35.6707317073171, Blast_Score=237, Evalue=1e-62,
Organism=Homo sapiens, GI13376042, Length=328, Percent_Identity=33.2317073170732, Blast_Score=204, Evalue=2e-52,
Organism=Homo sapiens, GI300863126, Length=373, Percent_Identity=30.8310991957105, Blast_Score=197, Evalue=1e-50,
Organism=Homo sapiens, GI266456254, Length=379, Percent_Identity=25.065963060686, Blast_Score=109, Evalue=5e-24,
Organism=Homo sapiens, GI42794625, Length=379, Percent_Identity=25.065963060686, Blast_Score=108, Evalue=6e-24,
Organism=Homo sapiens, GI266458397, Length=247, Percent_Identity=30.7692307692308, Blast_Score=108, Evalue=1e-23,
Organism=Homo sapiens, GI266458393, Length=247, Percent_Identity=30.7692307692308, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI42822893, Length=158, Percent_Identity=31.0126582278481, Blast_Score=86, Evalue=8e-17,
Organism=Homo sapiens, GI266458395, Length=136, Percent_Identity=33.0882352941176, Blast_Score=86, Evalue=8e-17,
Organism=Escherichia coli, GI87082093, Length=349, Percent_Identity=34.9570200573066, Blast_Score=228, Evalue=7e-61,
Organism=Escherichia coli, GI1788717, Length=401, Percent_Identity=27.930174563591, Blast_Score=131, Evalue=9e-32,
Organism=Escherichia coli, GI1786222, Length=343, Percent_Identity=25.0728862973761, Blast_Score=75, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI32564160, Length=332, Percent_Identity=26.5060240963855, Blast_Score=102, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI115535051, Length=335, Percent_Identity=23.8805970149254, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24648431, Length=376, Percent_Identity=36.1702127659575, Blast_Score=241, Evalue=5e-64,
Organism=Drosophila melanogaster, GI24585488, Length=349, Percent_Identity=28.9398280802292, Blast_Score=122, Evalue=4e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 40512; Mature: 40381

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGPLAGIKVIEIAQAIAGPMAGMILGDMGAEVIKVEKHDGGDDARHWGPPFVDGDSLLF
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEE
HTYNRNKRSVTLDIKNPDDVARLKQLVQDADILIQNLRSGVVASCGIGPDVMCAVNPRLI
EEECCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCEEEEECCEEE
YCSVWAFGKAGPLSKEPGFDPLLQAYGGVMSLTGGPEHPPTFCAPPINDRATAQWCVIGA
EEEEEECCCCCCCCCCCCCCHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHH
LAALQQRHVTGKGCVIDTSLFDTAVGWVDMSLSGYLLDGEPPVRHGTASGTLAPYQVFET
HHHHHHHCCCCCCEEEECHHHHHHHHEEEECCCEEEECCCCCCCCCCCCCCCCHHHHHHC
ADRPIVIAAGNDRLFARCADVLGHPEWSTDHRFARVRDRQAHRPVLIPLMQEVLRTRGAT
CCCCEEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEHHHHHHHHHHCCCH
DWLAAFKSAGVPVSPVNDIAELAATEQLAAADLLRTMPDTGLKVAGLPILFDGQRPDPEL
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCEEEECCCCCCCCC
ATPKLGAHNHEVLGNRAAAE
CCCCCCCCCHHHHCCCCCCC
>Mature Secondary Structure 
GGPLAGIKVIEIAQAIAGPMAGMILGDMGAEVIKVEKHDGGDDARHWGPPFVDGDSLLF
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEE
HTYNRNKRSVTLDIKNPDDVARLKQLVQDADILIQNLRSGVVASCGIGPDVMCAVNPRLI
EEECCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCEEEEECCEEE
YCSVWAFGKAGPLSKEPGFDPLLQAYGGVMSLTGGPEHPPTFCAPPINDRATAQWCVIGA
EEEEEECCCCCCCCCCCCCCHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHH
LAALQQRHVTGKGCVIDTSLFDTAVGWVDMSLSGYLLDGEPPVRHGTASGTLAPYQVFET
HHHHHHHCCCCCCEEEECHHHHHHHHEEEECCCEEEECCCCCCCCCCCCCCCCHHHHHHC
ADRPIVIAAGNDRLFARCADVLGHPEWSTDHRFARVRDRQAHRPVLIPLMQEVLRTRGAT
CCCCEEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEHHHHHHHHHHCCCH
DWLAAFKSAGVPVSPVNDIAELAATEQLAAADLLRTMPDTGLKVAGLPILFDGQRPDPEL
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCEEEECCCCCCCCC
ATPKLGAHNHEVLGNRAAAE
CCCCCCCCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]