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The map label for this gene is secD [H]

Identifier: 192291546

GI number: 192291546

Start: 3416908

End: 3418509

Strand: Reverse

Name: secD [H]

Synonym: Rpal_3172

Alternate gene names: 192291546

Gene position: 3418509-3416908 (Counterclockwise)

Preceding gene: 192291547

Following gene: 192291545

Centisome position: 59.51

GC content: 65.36

Gene sequence:

>1602_bases
ATGCTTTATATCTCACGGTGGAAGGCGCTGGCGATCATCCTGACGGCGCTGGCAGTGTGCCTTTGCGCCGTTCCCAATTT
CTTCCCCGAGAGCACCGTCAAGAGCTGGCCGAAATGGGCGCAGCGACACTTGGTGCTCGGCCTCGACCTGCAGGGTGGCT
CGCACATCCTGCTCGAGGTCGACGCCAATTCGGTGAAGAAGGACAAGCTCGATTCGGTTCGCGACGACGCCCGCCGGGTG
CTGCGCGAAGCCCGCATCGCCTACACCGGTCTCGCGACCAAGGGCGACTCGGTCGAAGTCCGGATCAGCAAAGACACCGA
CGTTCCGGCCGCACTCGCCAAACTCCGTGAGCTGTCGCAGCCGCTCGGCGGTCTGCTCGGCTCCAACGGCCAGCGCAGCC
TTGAAGTCTCCGACGCCGGCGGCGGTCTGATCCGCCTGACGGTGCCGCAGGCCGCGATCGCCGATCGCGTCCGTCAGTCG
GTCGACCAGTCGATTCAGATCGTCGAACGCCGCGTCAACGAACTCGGCACCGTCGAGCCGTTGATCCAGCGTCAGGGCGC
CGACCGCATTCTGGTGCAGGTGCCGGGTCTGCAGGATCCGACCCGGCTGAAGGAGTTGCTCGGCAAGACCGCCAAGCTCG
ACTTCCGGATGGTCGACAGCTCGGTGTCGGGCGATCAGGCGATGGGCGGGAACGTCCCGCCGGATTCCGAACTGCTGATG
AGCGCATCGTCGCCGAAGCAGCCTTACGTGATAAAGAAGCAGGTGCTGGTGTCCGGCGCCGATCTCACCGACGCGCAGCC
CGGCTTCGACCAGCGCACCGGCGAGCCCATCGTCTCGTTCCGCTTCAACACCAACGGCGCCCGCAAATTCGCCCGCGCCA
CCACCGAGAACGTCGGCCTTCCGTTCGCCATCGTGCTCGACAACGAGGTGATTTCCGCGCCGGTGATCCGCGAGCCGATC
ACCGGCGGCTCCGGCCAGATCTCGGGCAGCTTCACGGTGCAGGGCGCCAATGACCTTGCGATCCTGCTGCGCGCCGGCGC
GCTGCCGGCACCGCTGACGATCATCGAGGAGCGCACCGTCGGTCCGGGCCTTGGACAAGACTCGATCGAGAAGGGCGAAC
GCGCCGCCTATGTCGGCTCGATCCTCGTCATCGTGTTCATGCTGCTGACCTACCGGCTGTTTGGCGTGTTCGCCAACCTC
GCGGTCGCGGTCAACGTCGCGATGATCTTCGGCGTCCTGTCGCTGCTCAATGCAACCCTGACGCTGCCCGGCATCGCCGG
CATCGTGCTCACGGTCGGCATCGCGGTCGACAGTAACGTTCTGATCTACGAGCGCATCCGCGAGGAGATTCGTGCAGGCA
GAAACGCGATCTCGGCGATCGACGCCGGCTTCAAACGCGCGCTGGCGACGATTCTCGACTCCAACATCACCACCTTCATC
GCCGCCGCCGTGCTGTTCTATATCGGCACCGGTCCGGTGCGCGGTTTCGCGGTGACGCTGGGCATCGGCATCATCACCAC
GGTGTTCACCGCCTTCACTTTGACCCGACTGATCGTCGCGACCTGGGTGCGCTGGAAGCGGCCGCACCACGTGCCGATCT
GA

Upstream 100 bases:

>100_bases
CCAAGACCGAGGGCGACAAGACCGAACCGGCGAAGGACGACACCGCGTCGAGCTGATGCTTGGACGCTCCGCCTCTTTCG
GTTTCTGACGGGACAACTCG

Downstream 100 bases:

>100_bases
CGCATCGAATCCGAGAGAGCCACACGTGACACACTGGATTTTGGTCGGGCTGGGCGTTCTGATCGTGGTGCTGACGGTCG
TCAGCATCTTCGGCTGGCTG

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 533; Mature: 533

Protein sequence:

>533_residues
MLYISRWKALAIILTALAVCLCAVPNFFPESTVKSWPKWAQRHLVLGLDLQGGSHILLEVDANSVKKDKLDSVRDDARRV
LREARIAYTGLATKGDSVEVRISKDTDVPAALAKLRELSQPLGGLLGSNGQRSLEVSDAGGGLIRLTVPQAAIADRVRQS
VDQSIQIVERRVNELGTVEPLIQRQGADRILVQVPGLQDPTRLKELLGKTAKLDFRMVDSSVSGDQAMGGNVPPDSELLM
SASSPKQPYVIKKQVLVSGADLTDAQPGFDQRTGEPIVSFRFNTNGARKFARATTENVGLPFAIVLDNEVISAPVIREPI
TGGSGQISGSFTVQGANDLAILLRAGALPAPLTIIEERTVGPGLGQDSIEKGERAAYVGSILVIVFMLLTYRLFGVFANL
AVAVNVAMIFGVLSLLNATLTLPGIAGIVLTVGIAVDSNVLIYERIREEIRAGRNAISAIDAGFKRALATILDSNITTFI
AAAVLFYIGTGPVRGFAVTLGIGIITTVFTAFTLTRLIVATWVRWKRPHHVPI

Sequences:

>Translated_533_residues
MLYISRWKALAIILTALAVCLCAVPNFFPESTVKSWPKWAQRHLVLGLDLQGGSHILLEVDANSVKKDKLDSVRDDARRV
LREARIAYTGLATKGDSVEVRISKDTDVPAALAKLRELSQPLGGLLGSNGQRSLEVSDAGGGLIRLTVPQAAIADRVRQS
VDQSIQIVERRVNELGTVEPLIQRQGADRILVQVPGLQDPTRLKELLGKTAKLDFRMVDSSVSGDQAMGGNVPPDSELLM
SASSPKQPYVIKKQVLVSGADLTDAQPGFDQRTGEPIVSFRFNTNGARKFARATTENVGLPFAIVLDNEVISAPVIREPI
TGGSGQISGSFTVQGANDLAILLRAGALPAPLTIIEERTVGPGLGQDSIEKGERAAYVGSILVIVFMLLTYRLFGVFANL
AVAVNVAMIFGVLSLLNATLTLPGIAGIVLTVGIAVDSNVLIYERIREEIRAGRNAISAIDAGFKRALATILDSNITTFI
AAAVLFYIGTGPVRGFAVTLGIGIITTVFTAFTLTRLIVATWVRWKRPHHVPI
>Mature_533_residues
MLYISRWKALAIILTALAVCLCAVPNFFPESTVKSWPKWAQRHLVLGLDLQGGSHILLEVDANSVKKDKLDSVRDDARRV
LREARIAYTGLATKGDSVEVRISKDTDVPAALAKLRELSQPLGGLLGSNGQRSLEVSDAGGGLIRLTVPQAAIADRVRQS
VDQSIQIVERRVNELGTVEPLIQRQGADRILVQVPGLQDPTRLKELLGKTAKLDFRMVDSSVSGDQAMGGNVPPDSELLM
SASSPKQPYVIKKQVLVSGADLTDAQPGFDQRTGEPIVSFRFNTNGARKFARATTENVGLPFAIVLDNEVISAPVIREPI
TGGSGQISGSFTVQGANDLAILLRAGALPAPLTIIEERTVGPGLGQDSIEKGERAAYVGSILVIVFMLLTYRLFGVFANL
AVAVNVAMIFGVLSLLNATLTLPGIAGIVLTVGIAVDSNVLIYERIREEIRAGRNAISAIDAGFKRALATILDSNITTFI
AAAVLFYIGTGPVRGFAVTLGIGIITTVFTAFTLTRLIVATWVRWKRPHHVPI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=528, Percent_Identity=39.2045454545455, Blast_Score=334, Evalue=9e-93,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 57133; Mature: 57133

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYISRWKALAIILTALAVCLCAVPNFFPESTVKSWPKWAQRHLVLGLDLQGGSHILLEV
CEEHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCEEEEEEEECCCCEEEEEE
DANSVKKDKLDSVRDDARRVLREARIAYTGLATKGDSVEVRISKDTDVPAALAKLRELSQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEEECCCCHHHHHHHHHHHHH
PLGGLLGSNGQRSLEVSDAGGGLIRLTVPQAAIADRVRQSVDQSIQIVERRVNELGTVEP
HHHHHHCCCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
LIQRQGADRILVQVPGLQDPTRLKELLGKTAKLDFRMVDSSVSGDQAMGGNVPPDSELLM
HHHHCCCCEEEEEECCCCCHHHHHHHHCCHHCCEEEEECCCCCCCCCCCCCCCCCHHHHE
SASSPKQPYVIKKQVLVSGADLTDAQPGFDQRTGEPIVSFRFNTNGARKFARATTENVGL
ECCCCCCCEEEHHHHHEECCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCC
PFAIVLDNEVISAPVIREPITGGSGQISGSFTVQGANDLAILLRAGALPAPLTIIEERTV
CEEEEECCCHHCCCCHHCCCCCCCCEECCEEEEECCCCEEEEEECCCCCCCEEEEECCCC
GPGLGQDSIEKGERAAYVGSILVIVFMLLTYRLFGVFANLAVAVNVAMIFGVLSLLNATL
CCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLPGIAGIVLTVGIAVDSNVLIYERIREEIRAGRNAISAIDAGFKRALATILDSNITTFI
CCCHHHHHHHHHHHEECCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCHHHHH
AAAVLFYIGTGPVRGFAVTLGIGIITTVFTAFTLTRLIVATWVRWKRPHHVPI
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLYISRWKALAIILTALAVCLCAVPNFFPESTVKSWPKWAQRHLVLGLDLQGGSHILLEV
CEEHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCEEEEEEEECCCCEEEEEE
DANSVKKDKLDSVRDDARRVLREARIAYTGLATKGDSVEVRISKDTDVPAALAKLRELSQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEEECCCCHHHHHHHHHHHHH
PLGGLLGSNGQRSLEVSDAGGGLIRLTVPQAAIADRVRQSVDQSIQIVERRVNELGTVEP
HHHHHHCCCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
LIQRQGADRILVQVPGLQDPTRLKELLGKTAKLDFRMVDSSVSGDQAMGGNVPPDSELLM
HHHHCCCCEEEEEECCCCCHHHHHHHHCCHHCCEEEEECCCCCCCCCCCCCCCCCHHHHE
SASSPKQPYVIKKQVLVSGADLTDAQPGFDQRTGEPIVSFRFNTNGARKFARATTENVGL
ECCCCCCCEEEHHHHHEECCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCC
PFAIVLDNEVISAPVIREPITGGSGQISGSFTVQGANDLAILLRAGALPAPLTIIEERTV
CEEEEECCCHHCCCCHHCCCCCCCCEECCEEEEECCCCEEEEEECCCCCCCEEEEECCCC
GPGLGQDSIEKGERAAYVGSILVIVFMLLTYRLFGVFANLAVAVNVAMIFGVLSLLNATL
CCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLPGIAGIVLTVGIAVDSNVLIYERIREEIRAGRNAISAIDAGFKRALATILDSNITTFI
CCCHHHHHHHHHHHEECCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCHHHHH
AAAVLFYIGTGPVRGFAVTLGIGIITTVFTAFTLTRLIVATWVRWKRPHHVPI
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA