| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is yghU [H]
Identifier: 192291374
GI number: 192291374
Start: 3264749
End: 3265621
Strand: Reverse
Name: yghU [H]
Synonym: Rpal_2996
Alternate gene names: 192291374
Gene position: 3265621-3264749 (Counterclockwise)
Preceding gene: 192291378
Following gene: 192291366
Centisome position: 56.85
GC content: 65.06
Gene sequence:
>873_bases ATGACCGACGCCCCCTACACGCCGCCCAAAGTCTGGACCTGGGACAAGGAAAACGGCGGCAAATTCGCGTCGATCAACCG CCCGATCGCCGGCCCCACCCATGACAAGGAGCTGCCGGTCGGCAAGCATCCGCTGCAGCTGTATTCGCTGGCGACGCCGA ACGGCCAGAAGGTGACGATCCTGCTCGAAGAACTGCTGGCGCGCGGCCACACCGGCGCCGAATACGACGCCTGGCTGATC AAGATCGGCGACGGCGACCAGTTCTCGTCGGGCTTCGTGCAGGTCAATCCGAATTCGAAGATCCCGGCCCTGCTCGATCG CTCGGTGAATCCGCCGCAGCGCGTGTTCGAATCCGGCTCGATCCTGCTCTACCTCGCCGAGAAGTTCAGCGAATTCATCC CGAAGGATCCGGCCGGCCGCACCGAATGCCTGAACTGGCTGTTCTGGCAGATGGGCTCGGCCCCGTATCTCGGCGGCGGC TTCGGCCATTTCTATGCCTATGCGCCGGAGAAGTGGGAGTACCCGATCAACCGCTTCGCCATGGAGGTGAAGCGGCAGAT GGACGTGCTCGACCGCCGGCTGGCCGAGACCGAGTATCTCGCCGGCGCCGAATACTCGATCGCCGATATCGCGGTGTGGC CGTGGTACGGCGGGCTCGCCAACGGCGTGCTGTACGGCGACAGCGCCACCTTCCTGGATGTGGCCAGCTACAAGAACGTC CAGCGCTGGACCAAGGCGATCGGGGCCCGTCCCGCGGTGAAGCGCGGCCGCATCGTCAACCGCATCAGCGGCGACCTCTC CACCCAGCTCCACGAACGCCACGACGCCGGCGACTTCGAGACCAAGACGCAGGACAAGCTCGAGGCGAAGTAA
Upstream 100 bases:
>100_bases GGCATGACCAAGCTGCCGCGATGCCCCTTGCAATGCGCGCGCGGCTCGCCAATCTCTGCTGGTCCCCAACCACAATCCGA ACTCAATCCGGAGCCCATCG
Downstream 100 bases:
>100_bases TCTCCCGCACCTCGTCATTCCGGGGCGCGCGCAGCGCGAACCCGGAATCCCGAGGTCATCGCGCACTGCGTTTCCACAAG CTCCAGATTCCGGGTTCGCT
Product: glutathione S-transferase YghU
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 290; Mature: 289
Protein sequence:
>290_residues MTDAPYTPPKVWTWDKENGGKFASINRPIAGPTHDKELPVGKHPLQLYSLATPNGQKVTILLEELLARGHTGAEYDAWLI KIGDGDQFSSGFVQVNPNSKIPALLDRSVNPPQRVFESGSILLYLAEKFSEFIPKDPAGRTECLNWLFWQMGSAPYLGGG FGHFYAYAPEKWEYPINRFAMEVKRQMDVLDRRLAETEYLAGAEYSIADIAVWPWYGGLANGVLYGDSATFLDVASYKNV QRWTKAIGARPAVKRGRIVNRISGDLSTQLHERHDAGDFETKTQDKLEAK
Sequences:
>Translated_290_residues MTDAPYTPPKVWTWDKENGGKFASINRPIAGPTHDKELPVGKHPLQLYSLATPNGQKVTILLEELLARGHTGAEYDAWLI KIGDGDQFSSGFVQVNPNSKIPALLDRSVNPPQRVFESGSILLYLAEKFSEFIPKDPAGRTECLNWLFWQMGSAPYLGGG FGHFYAYAPEKWEYPINRFAMEVKRQMDVLDRRLAETEYLAGAEYSIADIAVWPWYGGLANGVLYGDSATFLDVASYKNV QRWTKAIGARPAVKRGRIVNRISGDLSTQLHERHDAGDFETKTQDKLEAK >Mature_289_residues TDAPYTPPKVWTWDKENGGKFASINRPIAGPTHDKELPVGKHPLQLYSLATPNGQKVTILLEELLARGHTGAEYDAWLIK IGDGDQFSSGFVQVNPNSKIPALLDRSVNPPQRVFESGSILLYLAEKFSEFIPKDPAGRTECLNWLFWQMGSAPYLGGGF GHFYAYAPEKWEYPINRFAMEVKRQMDVLDRRLAETEYLAGAEYSIADIAVWPWYGGLANGVLYGDSATFLDVASYKNVQ RWTKAIGARPAVKRGRIVNRISGDLSTQLHERHDAGDFETKTQDKLEAK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 GST N-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI87082195, Length=286, Percent_Identity=72.3776223776224, Blast_Score=437, Evalue=1e-124, Organism=Escherichia coli, GI1788640, Length=228, Percent_Identity=38.5964912280702, Blast_Score=148, Evalue=4e-37, Organism=Saccharomyces cerevisiae, GI6324100, Length=258, Percent_Identity=29.4573643410853, Blast_Score=88, Evalue=1e-18, Organism=Drosophila melanogaster, GI17864598, Length=182, Percent_Identity=31.3186813186813, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI28571670, Length=175, Percent_Identity=29.1428571428571, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI17864592, Length=210, Percent_Identity=25.7142857142857, Blast_Score=66, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010987 - InterPro: IPR004045 - InterPro: IPR017933 - InterPro: IPR004046 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF00043 GST_C; PF02798 GST_N [H]
EC number: NA
Molecular weight: Translated: 32482; Mature: 32351
Theoretical pI: Translated: 6.81; Mature: 6.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDAPYTPPKVWTWDKENGGKFASINRPIAGPTHDKELPVGKHPLQLYSLATPNGQKVTI CCCCCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEH LLEELLARGHTGAEYDAWLIKIGDGDQFSSGFVQVNPNSKIPALLDRSVNPPQRVFESGS HHHHHHHCCCCCCCCCEEEEEECCCCCCCCCEEEECCCCCCHHHHCCCCCCHHHHHCCCC ILLYLAEKFSEFIPKDPAGRTECLNWLFWQMGSAPYLGGGFGHFYAYAPEKWEYPINRFA EEEEEHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHEEECCCCCCCCHHHHH MEVKRQMDVLDRRLAETEYLAGAEYSIADIAVWPWYGGLANGVLYGDSATFLDVASYKNV HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHCCEEECCCCCEEEHHHHHHH QRWTKAIGARPAVKRGRIVNRISGDLSTQLHERHDAGDFETKTQDKLEAK HHHHHHHCCCCCHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCC >Mature Secondary Structure TDAPYTPPKVWTWDKENGGKFASINRPIAGPTHDKELPVGKHPLQLYSLATPNGQKVTI CCCCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEH LLEELLARGHTGAEYDAWLIKIGDGDQFSSGFVQVNPNSKIPALLDRSVNPPQRVFESGS HHHHHHHCCCCCCCCCEEEEEECCCCCCCCCEEEECCCCCCHHHHCCCCCCHHHHHCCCC ILLYLAEKFSEFIPKDPAGRTECLNWLFWQMGSAPYLGGGFGHFYAYAPEKWEYPINRFA EEEEEHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHEEECCCCCCCCHHHHH MEVKRQMDVLDRRLAETEYLAGAEYSIADIAVWPWYGGLANGVLYGDSATFLDVASYKNV HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHCCEEECCCCCEEEHHHHHHH QRWTKAIGARPAVKRGRIVNRISGDLSTQLHERHDAGDFETKTQDKLEAK HHHHHHHCCCCCHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]