Definition Rhodopseudomonas palustris TIE-1 chromosome, complete genome.
Accession NC_011004
Length 5,744,041

Click here to switch to the map view.

The map label for this gene is 192291275

Identifier: 192291275

GI number: 192291275

Start: 3160500

End: 3161534

Strand: Reverse

Name: 192291275

Synonym: Rpal_2897

Alternate gene names: NA

Gene position: 3161534-3160500 (Counterclockwise)

Preceding gene: 192291289

Following gene: 192291274

Centisome position: 55.04

GC content: 64.73

Gene sequence:

>1035_bases
ATGTCACAAAAGGCCCTGATCGCCGCGATCACCTCGGGACTGTTCACGATGCTCGCCGTTGTCCTCTGGCCGATCGCATC
GGCGAAGGCGGAAGCCGAGATCGTCACCGAGGACTTCAAGATCAAGTCATCGGCTCCCGGAATCGAACTGTTCGTCCGCA
ACAAACGTCCCGCGGGCACGGACGTCTCCCGGGGCGATCGCACGGTGCTCTACGTGCACGGCGCCTCGCTGGCTTCCGAA
CTCGTGTTCGATCTGCCCGTCGGCGGTGCATCGTGGGCCGACGATCTCGCGCGTGCCGGCTGGGACGTGTGGCTGGTCGA
CGTTCGCGGCTACGGAAGGTCGACATGGCCCGAGGCACTGCGGGCGCCGGCCGAGAGCAACCCGCCGGTGGCGACAACGG
CCGAAGCCGTCGCGGACTTCACCTCCGCGGCCGATTTCATTCGCACCAAACGCAAGATCAACAGCCTGCAGGTGATTGGG
TGGTCTTGGGGCGGCGTGATCAGCGGTGCCTATGCGGCGGCCAATCCCGACAAGGTGTCGTCGCTCGTGCTTGTCGCGCC
GCTGTGGGCATTCGATAAGCCCGTCACCGCGGGTCCACCCAAGAAGGCATGGCAGGAATGGACGCTGGCCGACTCGCGCG
CGCGGATTCAAAAGGGCGTCCCAGCGGAACAGGCGAAGTTGATCCTGCCCGACAGCACCGTCGCGCTGTGGGAGAAGGCC
GTGCGCGACAGCCAGCCGGAGGCTGCGGGACGCACGCCCGAACTGTTCAGGTCGCCGACCGGCGTTGCGGCGGATGTGTC
GTGGCAAGCGCAGCAGCCCTATGATGCAGCCGCCATCAAGGCGCGGACCCTAATCATCCGCGGCGAGTGGGACGATCTTA
CGCCGAGGTCGCTGCAGCTGGCGCTGTTCGGCCAATTGAAGAACGCGAAGATTCGCGAGCTGATCGAAATCCCCGCTGCA
AGCCACTTCATCATTGTGGAAAAGGCCCGGGACCGACTGTTCGACGAAGTTAGAAACTTCCTCTCCCGGCACTGA

Upstream 100 bases:

>100_bases
GCACGAACGACCCATCGCACTCTGATTCATTGGAAACGAATTTCGGCACCGCTCTGCTAGCGTCGGGCCGTGCAAACATC
CTCATTCGGAAGGACTCTTG

Downstream 100 bases:

>100_bases
CCAAGCACGGTCCACGACACAGGCTCAAGACGAGAGCTTGCCACCTTCGCTGGTCTCGCCCGAGCCAAACTGTATCGCAC
CGTCCTTTAGACCGTGACCC

Product: alpha/beta hydrolase fold protein

Products: NA

Alternate protein names: Alpha/Beta Hydrolase Fold Protein; Hydrolase; Hydrolase Or Acyltransferase

Number of amino acids: Translated: 344; Mature: 343

Protein sequence:

>344_residues
MSQKALIAAITSGLFTMLAVVLWPIASAKAEAEIVTEDFKIKSSAPGIELFVRNKRPAGTDVSRGDRTVLYVHGASLASE
LVFDLPVGGASWADDLARAGWDVWLVDVRGYGRSTWPEALRAPAESNPPVATTAEAVADFTSAADFIRTKRKINSLQVIG
WSWGGVISGAYAAANPDKVSSLVLVAPLWAFDKPVTAGPPKKAWQEWTLADSRARIQKGVPAEQAKLILPDSTVALWEKA
VRDSQPEAAGRTPELFRSPTGVAADVSWQAQQPYDAAAIKARTLIIRGEWDDLTPRSLQLALFGQLKNAKIRELIEIPAA
SHFIIVEKARDRLFDEVRNFLSRH

Sequences:

>Translated_344_residues
MSQKALIAAITSGLFTMLAVVLWPIASAKAEAEIVTEDFKIKSSAPGIELFVRNKRPAGTDVSRGDRTVLYVHGASLASE
LVFDLPVGGASWADDLARAGWDVWLVDVRGYGRSTWPEALRAPAESNPPVATTAEAVADFTSAADFIRTKRKINSLQVIG
WSWGGVISGAYAAANPDKVSSLVLVAPLWAFDKPVTAGPPKKAWQEWTLADSRARIQKGVPAEQAKLILPDSTVALWEKA
VRDSQPEAAGRTPELFRSPTGVAADVSWQAQQPYDAAAIKARTLIIRGEWDDLTPRSLQLALFGQLKNAKIRELIEIPAA
SHFIIVEKARDRLFDEVRNFLSRH
>Mature_343_residues
SQKALIAAITSGLFTMLAVVLWPIASAKAEAEIVTEDFKIKSSAPGIELFVRNKRPAGTDVSRGDRTVLYVHGASLASEL
VFDLPVGGASWADDLARAGWDVWLVDVRGYGRSTWPEALRAPAESNPPVATTAEAVADFTSAADFIRTKRKINSLQVIGW
SWGGVISGAYAAANPDKVSSLVLVAPLWAFDKPVTAGPPKKAWQEWTLADSRARIQKGVPAEQAKLILPDSTVALWEKAV
RDSQPEAAGRTPELFRSPTGVAADVSWQAQQPYDAAAIKARTLIIRGEWDDLTPRSLQLALFGQLKNAKIRELIEIPAAS
HFIIVEKARDRLFDEVRNFLSRH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37444; Mature: 37313

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: PS00120 LIPASE_SER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
0.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQKALIAAITSGLFTMLAVVLWPIASAKAEAEIVTEDFKIKSSAPGIELFVRNKRPAGT
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCEEECCCCCCEEEEEECCCCCCC
DVSRGDRTVLYVHGASLASELVFDLPVGGASWADDLARAGWDVWLVDVRGYGRSTWPEAL
CCCCCCEEEEEEECHHHHHHHHHCCCCCCCHHHHHHHHCCCEEEEEEEECCCCCCCHHHH
RAPAESNPPVATTAEAVADFTSAADFIRTKRKINSLQVIGWSWGGVISGAYAAANPDKVS
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHCCCHHCCCCHHHH
SLVLVAPLWAFDKPVTAGPPKKAWQEWTLADSRARIQKGVPAEQAKLILPDSTVALWEKA
HEEEEEHHHHCCCCCCCCCCHHHHHHHHCCHHHHHHHCCCCHHHCEEECCCCHHHHHHHH
VRDSQPEAAGRTPELFRSPTGVAADVSWQAQQPYDAAAIKARTLIIRGEWDDLTPRSLQL
HHCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHEEEEEEEEECCCCCCCCCCEEE
ALFGQLKNAKIRELIEIPAASHFIIVEKARDRLFDEVRNFLSRH
EEHHCCCCHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SQKALIAAITSGLFTMLAVVLWPIASAKAEAEIVTEDFKIKSSAPGIELFVRNKRPAGT
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCEEECCCCCCEEEEEECCCCCCC
DVSRGDRTVLYVHGASLASELVFDLPVGGASWADDLARAGWDVWLVDVRGYGRSTWPEAL
CCCCCCEEEEEEECHHHHHHHHHCCCCCCCHHHHHHHHCCCEEEEEEEECCCCCCCHHHH
RAPAESNPPVATTAEAVADFTSAADFIRTKRKINSLQVIGWSWGGVISGAYAAANPDKVS
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHCCCHHCCCCHHHH
SLVLVAPLWAFDKPVTAGPPKKAWQEWTLADSRARIQKGVPAEQAKLILPDSTVALWEKA
HEEEEEHHHHCCCCCCCCCCHHHHHHHHCCHHHHHHHCCCCHHHCEEECCCCHHHHHHHH
VRDSQPEAAGRTPELFRSPTGVAADVSWQAQQPYDAAAIKARTLIIRGEWDDLTPRSLQL
HHCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHEEEEEEEEECCCCCCCCCCEEE
ALFGQLKNAKIRELIEIPAASHFIIVEKARDRLFDEVRNFLSRH
EEHHCCCCHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA