| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is 192291275
Identifier: 192291275
GI number: 192291275
Start: 3160500
End: 3161534
Strand: Reverse
Name: 192291275
Synonym: Rpal_2897
Alternate gene names: NA
Gene position: 3161534-3160500 (Counterclockwise)
Preceding gene: 192291289
Following gene: 192291274
Centisome position: 55.04
GC content: 64.73
Gene sequence:
>1035_bases ATGTCACAAAAGGCCCTGATCGCCGCGATCACCTCGGGACTGTTCACGATGCTCGCCGTTGTCCTCTGGCCGATCGCATC GGCGAAGGCGGAAGCCGAGATCGTCACCGAGGACTTCAAGATCAAGTCATCGGCTCCCGGAATCGAACTGTTCGTCCGCA ACAAACGTCCCGCGGGCACGGACGTCTCCCGGGGCGATCGCACGGTGCTCTACGTGCACGGCGCCTCGCTGGCTTCCGAA CTCGTGTTCGATCTGCCCGTCGGCGGTGCATCGTGGGCCGACGATCTCGCGCGTGCCGGCTGGGACGTGTGGCTGGTCGA CGTTCGCGGCTACGGAAGGTCGACATGGCCCGAGGCACTGCGGGCGCCGGCCGAGAGCAACCCGCCGGTGGCGACAACGG CCGAAGCCGTCGCGGACTTCACCTCCGCGGCCGATTTCATTCGCACCAAACGCAAGATCAACAGCCTGCAGGTGATTGGG TGGTCTTGGGGCGGCGTGATCAGCGGTGCCTATGCGGCGGCCAATCCCGACAAGGTGTCGTCGCTCGTGCTTGTCGCGCC GCTGTGGGCATTCGATAAGCCCGTCACCGCGGGTCCACCCAAGAAGGCATGGCAGGAATGGACGCTGGCCGACTCGCGCG CGCGGATTCAAAAGGGCGTCCCAGCGGAACAGGCGAAGTTGATCCTGCCCGACAGCACCGTCGCGCTGTGGGAGAAGGCC GTGCGCGACAGCCAGCCGGAGGCTGCGGGACGCACGCCCGAACTGTTCAGGTCGCCGACCGGCGTTGCGGCGGATGTGTC GTGGCAAGCGCAGCAGCCCTATGATGCAGCCGCCATCAAGGCGCGGACCCTAATCATCCGCGGCGAGTGGGACGATCTTA CGCCGAGGTCGCTGCAGCTGGCGCTGTTCGGCCAATTGAAGAACGCGAAGATTCGCGAGCTGATCGAAATCCCCGCTGCA AGCCACTTCATCATTGTGGAAAAGGCCCGGGACCGACTGTTCGACGAAGTTAGAAACTTCCTCTCCCGGCACTGA
Upstream 100 bases:
>100_bases GCACGAACGACCCATCGCACTCTGATTCATTGGAAACGAATTTCGGCACCGCTCTGCTAGCGTCGGGCCGTGCAAACATC CTCATTCGGAAGGACTCTTG
Downstream 100 bases:
>100_bases CCAAGCACGGTCCACGACACAGGCTCAAGACGAGAGCTTGCCACCTTCGCTGGTCTCGCCCGAGCCAAACTGTATCGCAC CGTCCTTTAGACCGTGACCC
Product: alpha/beta hydrolase fold protein
Products: NA
Alternate protein names: Alpha/Beta Hydrolase Fold Protein; Hydrolase; Hydrolase Or Acyltransferase
Number of amino acids: Translated: 344; Mature: 343
Protein sequence:
>344_residues MSQKALIAAITSGLFTMLAVVLWPIASAKAEAEIVTEDFKIKSSAPGIELFVRNKRPAGTDVSRGDRTVLYVHGASLASE LVFDLPVGGASWADDLARAGWDVWLVDVRGYGRSTWPEALRAPAESNPPVATTAEAVADFTSAADFIRTKRKINSLQVIG WSWGGVISGAYAAANPDKVSSLVLVAPLWAFDKPVTAGPPKKAWQEWTLADSRARIQKGVPAEQAKLILPDSTVALWEKA VRDSQPEAAGRTPELFRSPTGVAADVSWQAQQPYDAAAIKARTLIIRGEWDDLTPRSLQLALFGQLKNAKIRELIEIPAA SHFIIVEKARDRLFDEVRNFLSRH
Sequences:
>Translated_344_residues MSQKALIAAITSGLFTMLAVVLWPIASAKAEAEIVTEDFKIKSSAPGIELFVRNKRPAGTDVSRGDRTVLYVHGASLASE LVFDLPVGGASWADDLARAGWDVWLVDVRGYGRSTWPEALRAPAESNPPVATTAEAVADFTSAADFIRTKRKINSLQVIG WSWGGVISGAYAAANPDKVSSLVLVAPLWAFDKPVTAGPPKKAWQEWTLADSRARIQKGVPAEQAKLILPDSTVALWEKA VRDSQPEAAGRTPELFRSPTGVAADVSWQAQQPYDAAAIKARTLIIRGEWDDLTPRSLQLALFGQLKNAKIRELIEIPAA SHFIIVEKARDRLFDEVRNFLSRH >Mature_343_residues SQKALIAAITSGLFTMLAVVLWPIASAKAEAEIVTEDFKIKSSAPGIELFVRNKRPAGTDVSRGDRTVLYVHGASLASEL VFDLPVGGASWADDLARAGWDVWLVDVRGYGRSTWPEALRAPAESNPPVATTAEAVADFTSAADFIRTKRKINSLQVIGW SWGGVISGAYAAANPDKVSSLVLVAPLWAFDKPVTAGPPKKAWQEWTLADSRARIQKGVPAEQAKLILPDSTVALWEKAV RDSQPEAAGRTPELFRSPTGVAADVSWQAQQPYDAAAIKARTLIIRGEWDDLTPRSLQLALFGQLKNAKIRELIEIPAAS HFIIVEKARDRLFDEVRNFLSRH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37444; Mature: 37313
Theoretical pI: Translated: 9.32; Mature: 9.32
Prosite motif: PS00120 LIPASE_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 0.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 0.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQKALIAAITSGLFTMLAVVLWPIASAKAEAEIVTEDFKIKSSAPGIELFVRNKRPAGT CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCEEECCCCCCEEEEEECCCCCCC DVSRGDRTVLYVHGASLASELVFDLPVGGASWADDLARAGWDVWLVDVRGYGRSTWPEAL CCCCCCEEEEEEECHHHHHHHHHCCCCCCCHHHHHHHHCCCEEEEEEEECCCCCCCHHHH RAPAESNPPVATTAEAVADFTSAADFIRTKRKINSLQVIGWSWGGVISGAYAAANPDKVS CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHCCCHHCCCCHHHH SLVLVAPLWAFDKPVTAGPPKKAWQEWTLADSRARIQKGVPAEQAKLILPDSTVALWEKA HEEEEEHHHHCCCCCCCCCCHHHHHHHHCCHHHHHHHCCCCHHHCEEECCCCHHHHHHHH VRDSQPEAAGRTPELFRSPTGVAADVSWQAQQPYDAAAIKARTLIIRGEWDDLTPRSLQL HHCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHEEEEEEEEECCCCCCCCCCEEE ALFGQLKNAKIRELIEIPAASHFIIVEKARDRLFDEVRNFLSRH EEHHCCCCHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHCC >Mature Secondary Structure SQKALIAAITSGLFTMLAVVLWPIASAKAEAEIVTEDFKIKSSAPGIELFVRNKRPAGT CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCEEECCCCCCEEEEEECCCCCCC DVSRGDRTVLYVHGASLASELVFDLPVGGASWADDLARAGWDVWLVDVRGYGRSTWPEAL CCCCCCEEEEEEECHHHHHHHHHCCCCCCCHHHHHHHHCCCEEEEEEEECCCCCCCHHHH RAPAESNPPVATTAEAVADFTSAADFIRTKRKINSLQVIGWSWGGVISGAYAAANPDKVS CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHCCCHHCCCCHHHH SLVLVAPLWAFDKPVTAGPPKKAWQEWTLADSRARIQKGVPAEQAKLILPDSTVALWEKA HEEEEEHHHHCCCCCCCCCCHHHHHHHHCCHHHHHHHCCCCHHHCEEECCCCHHHHHHHH VRDSQPEAAGRTPELFRSPTGVAADVSWQAQQPYDAAAIKARTLIIRGEWDDLTPRSLQL HHCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHEEEEEEEEECCCCCCCCCCEEE ALFGQLKNAKIRELIEIPAASHFIIVEKARDRLFDEVRNFLSRH EEHHCCCCHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA