Click here to switch to the map view.

The map label for this gene is ydcN [H]

Identifier: 192291255

GI number: 192291255

Start: 3139825

End: 3140448

Strand: Reverse

Name: ydcN [H]

Synonym: Rpal_2877

Alternate gene names: 192291255

Gene position: 3140448-3139825 (Counterclockwise)

Preceding gene: 192291256

Following gene: 192291248

Centisome position: 54.67

GC content: 64.42

Gene sequence:

>624_bases
ATGAGCGACGCCAGCTTCCGGCTCGAATCCCACGAAACCGAAGCGAAGCACGTGTCAGTCGATCTGCCGTCCATCGTCGG
GCACAATCTGCGGCGGCTTCGGGTCCGGCAGGGTTACTCGCTTGAACGTCTGGCTAAGCAATCCGGCGTCAGCCGTGCGA
TGCTTGGGCAGATCGAGACCGGCAAGAGCGTGCCGACGATCGGAACCTTGTGGAAGGTCGCGACCGCGCTCGGCGTTCCG
TTCGCGCGCCTGATCGCGACGGAGACCCCCCACCATCCCCAGGTGCTGCGCCGGACTGATGCGAAACTGCTGACGTCGAA
CCAAGGGCAGTTCACCTCGCGCGCGCTGTTTCCGTTCGACGGCGAGCGCCAGGTCGAATTCTACGAACTGCGGCTGGCAC
CGCTTCATCGCGAGGACGCCGATCCGCACGCCGCCGGCACCCGCGAAAATCTGGTCGTTGCGAAAGGTGCCGTCGAAATC
ACCGCAGGCGCGGAACGGCCCGTGGTACTCAGCGCCGGCGACGCGATCCTGTTCGACGCAGATGTCCCGCACAGCTATCG
CAATCTCGGCGCCGAGGAAGCCGTTCTGTTCCTCGTCATGACCTACGTCGAGTCGATCGGATAG

Upstream 100 bases:

>100_bases
CGCTTCCGTTTCATGGTCAGGCATTCTTCTTCGGTTTCTGGCCGAGCTGGGTGATGGCGCCGATTATGCTGATCGGCGGC
TACACGCCCGGAGCGAAGGG

Downstream 100 bases:

>100_bases
CCGCTCGTCGCGTGCCCCGCGGAGCAGCGCTCGTCCAGTCGGAGCAAACGCTTAACTGCGCTGGGTGTTGGCCCCGGCAA
AGAAATCTGTGGCTCAACGG

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 206

Protein sequence:

>207_residues
MSDASFRLESHETEAKHVSVDLPSIVGHNLRRLRVRQGYSLERLAKQSGVSRAMLGQIETGKSVPTIGTLWKVATALGVP
FARLIATETPHHPQVLRRTDAKLLTSNQGQFTSRALFPFDGERQVEFYELRLAPLHREDADPHAAGTRENLVVAKGAVEI
TAGAERPVVLSAGDAILFDADVPHSYRNLGAEEAVLFLVMTYVESIG

Sequences:

>Translated_207_residues
MSDASFRLESHETEAKHVSVDLPSIVGHNLRRLRVRQGYSLERLAKQSGVSRAMLGQIETGKSVPTIGTLWKVATALGVP
FARLIATETPHHPQVLRRTDAKLLTSNQGQFTSRALFPFDGERQVEFYELRLAPLHREDADPHAAGTRENLVVAKGAVEI
TAGAERPVVLSAGDAILFDADVPHSYRNLGAEEAVLFLVMTYVESIG
>Mature_206_residues
SDASFRLESHETEAKHVSVDLPSIVGHNLRRLRVRQGYSLERLAKQSGVSRAMLGQIETGKSVPTIGTLWKVATALGVPF
ARLIATETPHHPQVLRRTDAKLLTSNQGQFTSRALFPFDGERQVEFYELRLAPLHREDADPHAAGTRENLVVAKGAVEIT
AGAERPVVLSAGDAILFDADVPHSYRNLGAEEAVLFLVMTYVESIG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=178, Percent_Identity=37.6404494382022, Blast_Score=117, Evalue=6e-28,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 22678; Mature: 22547

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDASFRLESHETEAKHVSVDLPSIVGHNLRRLRVRQGYSLERLAKQSGVSRAMLGQIET
CCCCCEEECCCCCCCCEEEEECHHHHCCHHHHHHHHCCCCHHHHHHHCCCCHHHHCCCCC
GKSVPTIGTLWKVATALGVPFARLIATETPHHPQVLRRTDAKLLTSNQGQFTSRALFPFD
CCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHCHHHEECCCCCCCEEEECCCC
GERQVEFYELRLAPLHREDADPHAAGTRENLVVAKGAVEITAGAERPVVLSAGDAILFDA
CCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCEEEECCCCCCEEEECCCEEEEEC
DVPHSYRNLGAEEAVLFLVMTYVESIG
CCCHHHHHCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SDASFRLESHETEAKHVSVDLPSIVGHNLRRLRVRQGYSLERLAKQSGVSRAMLGQIET
CCCCEEECCCCCCCCEEEEECHHHHCCHHHHHHHHCCCCHHHHHHHCCCCHHHHCCCCC
GKSVPTIGTLWKVATALGVPFARLIATETPHHPQVLRRTDAKLLTSNQGQFTSRALFPFD
CCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHCHHHEECCCCCCCEEEECCCC
GERQVEFYELRLAPLHREDADPHAAGTRENLVVAKGAVEITAGAERPVVLSAGDAILFDA
CCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCEEEECCCCCCEEEECCCEEEEEC
DVPHSYRNLGAEEAVLFLVMTYVESIG
CCCHHHHHCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]