| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is 192291119
Identifier: 192291119
GI number: 192291119
Start: 2980856
End: 2981503
Strand: Reverse
Name: 192291119
Synonym: Rpal_2740
Alternate gene names: NA
Gene position: 2981503-2980856 (Counterclockwise)
Preceding gene: 192291133
Following gene: 192291117
Centisome position: 51.91
GC content: 63.89
Gene sequence:
>648_bases ATGCCCGAAGTTATTTTCACCGGTCCGGCGGGCCGACTTGAAGGCCGCTACCACCCGGCGAAGCAGAAGAACGCGCCGAT CGCGATGGTGCTGCATCCGCATCCGCAGTTCCGCGGCAACATGAACCACCCGATCGTCTATCAGGTGTATTACGCCTTCG TGGCCCGCGGCTTCTCGGTGCTGCGGTTCAATTTCCGCGGCGTCGGCCGCAGCCAGGGGTCGTTCGACCACGGTACCGGC GAGCTGGCGGACGCGGCCTCCGCGCTCGATTGGGCGCAGACCATCAATCCCGAAGCCCGCGCCTGCTGGGTCGCCGGCTT CTCGTTCGGCGCCTGGATCGGCATGCAGCTCCTCATGCGCCGCCCCGAGGTCGAAGGCTTTATCTCGATCGCGCCGGAAC CGAACCGCTACGATTTTTCGTTCCTGGCGCCCTGCCCGTCGTCCGGCCTGATCGTCCATGGCGAAAAGGACATCGTGGCG CCGGCCAAGGACGTCAACACCCTGGTCGAGAAGTTGAAGACCCAAAAGGGCATCGTGATCGACCAGCAGACCATCCCTGG CGCCAACCACTTCTTCGAAGACCGGATGGAGCCGCTGATGGAGACGATCACGTCCTATCTCGACATGCGGCTCGCCAACG TCCGCTAA
Upstream 100 bases:
>100_bases TGCCCCCTCCGCGTTGCGGCAGCCGGCGGCCGTTGCTGGCAGGACCCGCGCGCGCCCGGCGCGCCAGGCCGAATCCCACG ATGTCGCGCAAGGATCGCTG
Downstream 100 bases:
>100_bases GTCGCGTGGGCATCCTCTGATCCGAAAACCGGTCTTCGGTTTTCGGATCAGCCTTACGGCCGCGCCAGAAGCCCGCCGGT CATCGGAAAGGCGACGCCCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 215; Mature: 214
Protein sequence:
>215_residues MPEVIFTGPAGRLEGRYHPAKQKNAPIAMVLHPHPQFRGNMNHPIVYQVYYAFVARGFSVLRFNFRGVGRSQGSFDHGTG ELADAASALDWAQTINPEARACWVAGFSFGAWIGMQLLMRRPEVEGFISIAPEPNRYDFSFLAPCPSSGLIVHGEKDIVA PAKDVNTLVEKLKTQKGIVIDQQTIPGANHFFEDRMEPLMETITSYLDMRLANVR
Sequences:
>Translated_215_residues MPEVIFTGPAGRLEGRYHPAKQKNAPIAMVLHPHPQFRGNMNHPIVYQVYYAFVARGFSVLRFNFRGVGRSQGSFDHGTG ELADAASALDWAQTINPEARACWVAGFSFGAWIGMQLLMRRPEVEGFISIAPEPNRYDFSFLAPCPSSGLIVHGEKDIVA PAKDVNTLVEKLKTQKGIVIDQQTIPGANHFFEDRMEPLMETITSYLDMRLANVR >Mature_214_residues PEVIFTGPAGRLEGRYHPAKQKNAPIAMVLHPHPQFRGNMNHPIVYQVYYAFVARGFSVLRFNFRGVGRSQGSFDHGTGE LADAASALDWAQTINPEARACWVAGFSFGAWIGMQLLMRRPEVEGFISIAPEPNRYDFSFLAPCPSSGLIVHGEKDIVAP AKDVNTLVEKLKTQKGIVIDQQTIPGANHFFEDRMEPLMETITSYLDMRLANVR
Specific function: Unknown
COG id: COG2945
COG function: function code R; Predicted hydrolase of the alpha/beta superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000383 [H]
Pfam domain/function: PF02129 Peptidase_S15 [H]
EC number: NA
Molecular weight: Translated: 23977; Mature: 23846
Theoretical pI: Translated: 7.70; Mature: 7.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPEVIFTGPAGRLEGRYHPAKQKNAPIAMVLHPHPQFRGNMNHPIVYQVYYAFVARGFSV CCCEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEE LRFNFRGVGRSQGSFDHGTGELADAASALDWAQTINPEARACWVAGFSFGAWIGMQLLMR EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHH RPEVEGFISIAPEPNRYDFSFLAPCPSSGLIVHGEKDIVAPAKDVNTLVEKLKTQKGIVI CCCCCEEEEECCCCCCCCEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCEEE DQQTIPGANHFFEDRMEPLMETITSYLDMRLANVR ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure PEVIFTGPAGRLEGRYHPAKQKNAPIAMVLHPHPQFRGNMNHPIVYQVYYAFVARGFSV CCEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEE LRFNFRGVGRSQGSFDHGTGELADAASALDWAQTINPEARACWVAGFSFGAWIGMQLLMR EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHH RPEVEGFISIAPEPNRYDFSFLAPCPSSGLIVHGEKDIVAPAKDVNTLVEKLKTQKGIVI CCCCCEEEEECCCCCCCCEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCEEE DQQTIPGANHFFEDRMEPLMETITSYLDMRLANVR ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9823893 [H]