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The map label for this gene is yebA [H]

Identifier: 192291112

GI number: 192291112

Start: 2969955

End: 2971325

Strand: Reverse

Name: yebA [H]

Synonym: Rpal_2733

Alternate gene names: 192291112

Gene position: 2971325-2969955 (Counterclockwise)

Preceding gene: 192291113

Following gene: 192291107

Centisome position: 51.73

GC content: 69.58

Gene sequence:

>1371_bases
ATGTCGTACCGTTCCGGCCACCCATCCGCAGCGATTCACCCCCACGGCCACCAACAAGTCCAGGCGCCCCGGCCGGCGGC
GCCACGCCCGGCACGTCCGCCTCAGCGGCCGGCGCCGACCGGTAACAGCTACACCATCGCGCATGCCGGCCGTCAGGTGC
GGATCGGGCCGGTGCTGTTCTGGATCGTGGTCGGCAGCATCGTGCTACTCGGCTGCTGGAGCGCGGCGACCGCTACGTAC
TTCACCTTCCGTGACGACGTACTGACGCGGCTGATCGCCCGCCAGGCCGAGATGCAGTACGCGTATGAGGATCGCATCGC
CGAGCTGCGCGCCAAGGTCGATCGCACCACCAGCCGGCAGCTGCTCGACCAGGAGCAGTTCGACCAGAAGCTCGAACAGA
TCATGCGGCGGCAGTCGCTGCTTGAGTCGCGCGCCGGCGCGCTCAGCGCCCTGCCCGACGTCGGCGTCACAGGCAGCATC
AAGCCGACCCGAACACCGTCGTTCGAAGCCGAGACCAACAGCCGGCCGAAGCCGTCGCCGATCAACGACACCGTGATCTT
CGTGGCGCCGCCGGACCGCGAGGCGCGGCTGGAGTCGCGAACGTCGCCGTCGGCACTCGAACAGGCGCCAACCCAATACG
CCAAGAGCCAGGGCGTCGAGAGCGTCCTGATGCGGCTGCAGACCTCGCTCGATCAGGTCGAGCGCCGCCAGGTAGCCTCG
CTCGGCGCGGTCGAAGAGAGCTTCGAGTCGCGCGCGCGCCGGATGCGCGGCGTGCTGACCGATCTCGGCCTCGACGCCCG
CGGCATCGAAGCCTCCGCGCCGCGCGCCGCCGTTGGCGGCCCGTTCGTGCCGGTGAAACAGCCGGGCGCCAACGCCAGCG
CGTTCGACCGCCAGCTGTACCGGATCTACATCAGCCGCTCGCAGTTCGAACGCCTCAACCGCGCCCTCGCCCTGGTGCCG
TATCGCAAGCCGGTGCTCGGCGAAGTCGAATTCTCCTCGGGCTTCGGCGTCCGCTCCGATCCGTTCCTCGGCCGTCCGGC
GATGCACACCGGGCTCGACTTCCGCGCCTCCACCGGCGATCCCGTCCGCGCCACTGCGGTCGGCAAGGTGGTGAATGCCG
GCTGGCAGGGCGGCTACGGCCAGATGGTCGAGATCGACCACGGCAACGGCCTGTCGACCCGCTACGGCCATCTGTCGAAG
ATCATCGCCAAGGTCGGCCAGAGCATCCAGATCGGCCAGGTGATCGGCGAAGTCGGCTCCACCGGCCGGTCCACCGGTCC
GCATCTGCACTACGAAACCCGCATCGACGGCGAAGCCGTCGACCCGCAGAAATTCCTGCGCGCCGGCGTGCGGCTGGCGG
GCGCGGGTTAG

Upstream 100 bases:

>100_bases
CTTGATAGTTTTCATTTTCTGAAAATTAACCATGCAGGGGTCAAATCGCACCGCGTCTTGAGCGGAACCGTGACGAGTTC
CGTTCGGCGCGGGAGTTCCG

Downstream 100 bases:

>100_bases
GATCGTTCGCTCCGCCAGCGCCGGGGTTCGAGCCACGCCAGGGCGCGGCCGTCGATAATCTGCAGCGCGCTGGCGATCAG
CGTTTGCACCGCGAAGGGTT

Product: peptidase M23

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 456; Mature: 455

Protein sequence:

>456_residues
MSYRSGHPSAAIHPHGHQQVQAPRPAAPRPARPPQRPAPTGNSYTIAHAGRQVRIGPVLFWIVVGSIVLLGCWSAATATY
FTFRDDVLTRLIARQAEMQYAYEDRIAELRAKVDRTTSRQLLDQEQFDQKLEQIMRRQSLLESRAGALSALPDVGVTGSI
KPTRTPSFEAETNSRPKPSPINDTVIFVAPPDREARLESRTSPSALEQAPTQYAKSQGVESVLMRLQTSLDQVERRQVAS
LGAVEESFESRARRMRGVLTDLGLDARGIEASAPRAAVGGPFVPVKQPGANASAFDRQLYRIYISRSQFERLNRALALVP
YRKPVLGEVEFSSGFGVRSDPFLGRPAMHTGLDFRASTGDPVRATAVGKVVNAGWQGGYGQMVEIDHGNGLSTRYGHLSK
IIAKVGQSIQIGQVIGEVGSTGRSTGPHLHYETRIDGEAVDPQKFLRAGVRLAGAG

Sequences:

>Translated_456_residues
MSYRSGHPSAAIHPHGHQQVQAPRPAAPRPARPPQRPAPTGNSYTIAHAGRQVRIGPVLFWIVVGSIVLLGCWSAATATY
FTFRDDVLTRLIARQAEMQYAYEDRIAELRAKVDRTTSRQLLDQEQFDQKLEQIMRRQSLLESRAGALSALPDVGVTGSI
KPTRTPSFEAETNSRPKPSPINDTVIFVAPPDREARLESRTSPSALEQAPTQYAKSQGVESVLMRLQTSLDQVERRQVAS
LGAVEESFESRARRMRGVLTDLGLDARGIEASAPRAAVGGPFVPVKQPGANASAFDRQLYRIYISRSQFERLNRALALVP
YRKPVLGEVEFSSGFGVRSDPFLGRPAMHTGLDFRASTGDPVRATAVGKVVNAGWQGGYGQMVEIDHGNGLSTRYGHLSK
IIAKVGQSIQIGQVIGEVGSTGRSTGPHLHYETRIDGEAVDPQKFLRAGVRLAGAG
>Mature_455_residues
SYRSGHPSAAIHPHGHQQVQAPRPAAPRPARPPQRPAPTGNSYTIAHAGRQVRIGPVLFWIVVGSIVLLGCWSAATATYF
TFRDDVLTRLIARQAEMQYAYEDRIAELRAKVDRTTSRQLLDQEQFDQKLEQIMRRQSLLESRAGALSALPDVGVTGSIK
PTRTPSFEAETNSRPKPSPINDTVIFVAPPDREARLESRTSPSALEQAPTQYAKSQGVESVLMRLQTSLDQVERRQVASL
GAVEESFESRARRMRGVLTDLGLDARGIEASAPRAAVGGPFVPVKQPGANASAFDRQLYRIYISRSQFERLNRALALVPY
RKPVLGEVEFSSGFGVRSDPFLGRPAMHTGLDFRASTGDPVRATAVGKVVNAGWQGGYGQMVEIDHGNGLSTRYGHLSKI
IAKVGQSIQIGQVIGEVGSTGRSTGPHLHYETRIDGEAVDPQKFLRAGVRLAGAG

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=135, Percent_Identity=43.7037037037037, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI87082297, Length=96, Percent_Identity=40.625, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI87082174, Length=99, Percent_Identity=36.3636363636364, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1789099, Length=99, Percent_Identity=36.3636363636364, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 49644; Mature: 49513

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYRSGHPSAAIHPHGHQQVQAPRPAAPRPARPPQRPAPTGNSYTIAHAGRQVRIGPVLF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEHHHHH
WIVVGSIVLLGCWSAATATYFTFRDDVLTRLIARQAEMQYAYEDRIAELRAKVDRTTSRQ
HHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLDQEQFDQKLEQIMRRQSLLESRAGALSALPDVGVTGSIKPTRTPSFEAETNSRPKPSP
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
INDTVIFVAPPDREARLESRTSPSALEQAPTQYAKSQGVESVLMRLQTSLDQVERRQVAS
CCCEEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
LGAVEESFESRARRMRGVLTDLGLDARGIEASAPRAAVGGPFVPVKQPGANASAFDRQLY
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
RIYISRSQFERLNRALALVPYRKPVLGEVEFSSGFGVRSDPFLGRPAMHTGLDFRASTGD
HHHHHHHHHHHHHHHEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCHHCCCCEECCCCC
PVRATAVGKVVNAGWQGGYGQMVEIDHGNGLSTRYGHLSKIIAKVGQSIQIGQVIGEVGS
CCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEHHHHHHHHCC
TGRSTGPHLHYETRIDGEAVDPQKFLRAGVRLAGAG
CCCCCCCCEEEEECCCCCCCCHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SYRSGHPSAAIHPHGHQQVQAPRPAAPRPARPPQRPAPTGNSYTIAHAGRQVRIGPVLF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEHHHHH
WIVVGSIVLLGCWSAATATYFTFRDDVLTRLIARQAEMQYAYEDRIAELRAKVDRTTSRQ
HHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLDQEQFDQKLEQIMRRQSLLESRAGALSALPDVGVTGSIKPTRTPSFEAETNSRPKPSP
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
INDTVIFVAPPDREARLESRTSPSALEQAPTQYAKSQGVESVLMRLQTSLDQVERRQVAS
CCCEEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
LGAVEESFESRARRMRGVLTDLGLDARGIEASAPRAAVGGPFVPVKQPGANASAFDRQLY
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
RIYISRSQFERLNRALALVPYRKPVLGEVEFSSGFGVRSDPFLGRPAMHTGLDFRASTGD
HHHHHHHHHHHHHHHEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCHHCCCCEECCCCC
PVRATAVGKVVNAGWQGGYGQMVEIDHGNGLSTRYGHLSKIIAKVGQSIQIGQVIGEVGS
CCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEHHHHHHHHCC
TGRSTGPHLHYETRIDGEAVDPQKFLRAGVRLAGAG
CCCCCCCCEEEEECCCCCCCCHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]