| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is 192291087
Identifier: 192291087
GI number: 192291087
Start: 2939829
End: 2941046
Strand: Reverse
Name: 192291087
Synonym: Rpal_2708
Alternate gene names: NA
Gene position: 2941046-2939829 (Counterclockwise)
Preceding gene: 192291088
Following gene: 192291086
Centisome position: 51.2
GC content: 66.67
Gene sequence:
>1218_bases GTGACCCCGATCCTGATCTTCGGCATCCCGCTCGATTTCATCCTGTTTGCCGCCACCCTGGTCGGGGTCGCGATCTTCCA TCGCCACACCTTGCTGATCGCGCTGGCCGGCCTGGTAACCGTGGTCGGCTACAAGCTGGCGTTCGCCGGCTTCAAGACCG GCGTCGGCCTGTCCGGCTTGGCGCTGCACATGCAGCACGAATGGGTCACGCTGGCGAACCTGTTCCTGCTGCTGATGGGC TTCGCGCTGCTGTCGGCGCATTTCGAAAAGAGCGGCATTCCCGACGAGATGCCGGCACTGCTCCCGGACGACTGGAAAGG CCCGGTGGTGCTGCTCGGGCTGGTGTTCGTGCTGTCGAGCTTCCTCGACAACATCGCCGCCGCGCTGATCGGCGGCATGG TGGCGCGGCACGTGTTCCGCGGCCGGGTCCACATCGGTTACCTCGCCGCGATCGTCGCCGCCTCGAACGCAGGCGGCTCC GGCAGCGTGGTCGGCGACACCACCACGACGATGATGTGGATCGCAGGGGTCTCGCCGCTCAGCGTGCTGGAAGCTTACGT GGCGGCGGTGATCGCGCTGGCGCTGTTCGCCGTGCCGGCCTCGATCCAGCAGCAGAAGTTTTCGCCGATCGTGAAGAACG CGCCAAAAGGCCTGCAGATCGAGTGGGTCCGGGTCGGCATCGTCGCGGCGATCCTGATCGCGGCACTGGCGGCCAACGTC ACCGCGAACATGAAATTCCCGGCGCTGCTCGACCACGCGCCGGTGCTCGGCCTGACGGTCTGGGCGGTGATCCTGATCAC CGCGCCGCTGCGCCGGCCGGATTGGGAGCTGATGCCCGCGACCTTCAAGGGCACGATCTTCCTGCTCGCGCTGGTGACGG CGGCCTCGCTGATGCCGGTCGAAGAATTGCCCGCCGCGAGTTGGCAGACTGCGCTCGGCCTCGGCTTCGTCTCGGCCGGC TTCGACAACATCCCGCTCACCGCGCTGGCGCTGAAACAGGGCGGCTACGATTGGGGCTTTCTGGCCTACGCGGTCGGCTT CGGCGGCTCGATGATGTGGTTCGGCTCCTCGGCCGGCGTCGCGATCACCAACATGTTCCCAGAGGGCAAGTCCGTGGTGA TGTGGCTGCGCCACGGCTGGCACGTCGGCGTCGCCTATTTCATCGCGTTCTTTGCGATGCTGCTGCTGGTCGGCTGGCAT CCCGATCTGCCACGCTGA
Upstream 100 bases:
>100_bases CGCCTTTGAACGTTCACGCCCTCAGCGGCAATATGTTGCCGTTCGTATCTCGGTGGCGCGCCTCTGCGGCGCAGCCCGTC CTGTCCGGCGCGAGGCAGCC
Downstream 100 bases:
>100_bases GCCGCGACCGCCATCGCCCACAGGGTCGCGCCCTTTCGCCGTCGTGCTATGCTTTGCGGATGGCCTCACGAGACTCCTCC GCCGCTTCCGAGATCACGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 405; Mature: 404
Protein sequence:
>405_residues MTPILIFGIPLDFILFAATLVGVAIFHRHTLLIALAGLVTVVGYKLAFAGFKTGVGLSGLALHMQHEWVTLANLFLLLMG FALLSAHFEKSGIPDEMPALLPDDWKGPVVLLGLVFVLSSFLDNIAAALIGGMVARHVFRGRVHIGYLAAIVAASNAGGS GSVVGDTTTTMMWIAGVSPLSVLEAYVAAVIALALFAVPASIQQQKFSPIVKNAPKGLQIEWVRVGIVAAILIAALAANV TANMKFPALLDHAPVLGLTVWAVILITAPLRRPDWELMPATFKGTIFLLALVTAASLMPVEELPAASWQTALGLGFVSAG FDNIPLTALALKQGGYDWGFLAYAVGFGGSMMWFGSSAGVAITNMFPEGKSVVMWLRHGWHVGVAYFIAFFAMLLLVGWH PDLPR
Sequences:
>Translated_405_residues MTPILIFGIPLDFILFAATLVGVAIFHRHTLLIALAGLVTVVGYKLAFAGFKTGVGLSGLALHMQHEWVTLANLFLLLMG FALLSAHFEKSGIPDEMPALLPDDWKGPVVLLGLVFVLSSFLDNIAAALIGGMVARHVFRGRVHIGYLAAIVAASNAGGS GSVVGDTTTTMMWIAGVSPLSVLEAYVAAVIALALFAVPASIQQQKFSPIVKNAPKGLQIEWVRVGIVAAILIAALAANV TANMKFPALLDHAPVLGLTVWAVILITAPLRRPDWELMPATFKGTIFLLALVTAASLMPVEELPAASWQTALGLGFVSAG FDNIPLTALALKQGGYDWGFLAYAVGFGGSMMWFGSSAGVAITNMFPEGKSVVMWLRHGWHVGVAYFIAFFAMLLLVGWH PDLPR >Mature_404_residues TPILIFGIPLDFILFAATLVGVAIFHRHTLLIALAGLVTVVGYKLAFAGFKTGVGLSGLALHMQHEWVTLANLFLLLMGF ALLSAHFEKSGIPDEMPALLPDDWKGPVVLLGLVFVLSSFLDNIAAALIGGMVARHVFRGRVHIGYLAAIVAASNAGGSG SVVGDTTTTMMWIAGVSPLSVLEAYVAAVIALALFAVPASIQQQKFSPIVKNAPKGLQIEWVRVGIVAAILIAALAANVT ANMKFPALLDHAPVLGLTVWAVILITAPLRRPDWELMPATFKGTIFLLALVTAASLMPVEELPAASWQTALGLGFVSAGF DNIPLTALALKQGGYDWGFLAYAVGFGGSMMWFGSSAGVAITNMFPEGKSVVMWLRHGWHVGVAYFIAFFAMLLLVGWHP DLPR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42966; Mature: 42834
Theoretical pI: Translated: 8.06; Mature: 8.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPILIFGIPLDFILFAATLVGVAIFHRHTLLIALAGLVTVVGYKLAFAGFKTGVGLSGL CCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE ALHMQHEWVTLANLFLLLMGFALLSAHFEKSGIPDEMPALLPDDWKGPVVLLGLVFVLSS EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH FLDNIAAALIGGMVARHVFRGRVHIGYLAAIVAASNAGGSGSVVGDTTTTMMWIAGVSPL HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHCCCHH SVLEAYVAAVIALALFAVPASIQQQKFSPIVKNAPKGLQIEWVRVGIVAAILIAALAANV HHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHCC TANMKFPALLDHAPVLGLTVWAVILITAPLRRPDWELMPATFKGTIFLLALVTAASLMPV CCCCCCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCH EELPAASWQTALGLGFVSAGFDNIPLTALALKQGGYDWGFLAYAVGFGGSMMWFGSSAGV HHCCCCHHHHHHHHHHHHCCCCCCCHHHEEHHCCCCCHHHHHHHHHCCCCEEEECCCCCE AITNMFPEGKSVVMWLRHGWHVGVAYFIAFFAMLLLVGWHPDLPR EEEECCCCCCCEEHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure TPILIFGIPLDFILFAATLVGVAIFHRHTLLIALAGLVTVVGYKLAFAGFKTGVGLSGL CCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE ALHMQHEWVTLANLFLLLMGFALLSAHFEKSGIPDEMPALLPDDWKGPVVLLGLVFVLSS EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH FLDNIAAALIGGMVARHVFRGRVHIGYLAAIVAASNAGGSGSVVGDTTTTMMWIAGVSPL HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHCCCHH SVLEAYVAAVIALALFAVPASIQQQKFSPIVKNAPKGLQIEWVRVGIVAAILIAALAANV HHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHCC TANMKFPALLDHAPVLGLTVWAVILITAPLRRPDWELMPATFKGTIFLLALVTAASLMPV CCCCCCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCH EELPAASWQTALGLGFVSAGFDNIPLTALALKQGGYDWGFLAYAVGFGGSMMWFGSSAGV HHCCCCHHHHHHHHHHHHCCCCCCCHHHEEHHCCCCCHHHHHHHHHCCCCEEEECCCCCE AITNMFPEGKSVVMWLRHGWHVGVAYFIAFFAMLLLVGWHPDLPR EEEECCCCCCCEEHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA