| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is slt [H]
Identifier: 192291076
GI number: 192291076
Start: 2927951
End: 2930188
Strand: Reverse
Name: slt [H]
Synonym: Rpal_2697
Alternate gene names: 192291076
Gene position: 2930188-2927951 (Counterclockwise)
Preceding gene: 192291077
Following gene: 192291074
Centisome position: 51.01
GC content: 66.62
Gene sequence:
>2238_bases TTGCATCCATCATCACCATCACGACGCCGCCCGCCCTTCACGGTAGCCCTGAAGGCATCGACAGCAATCCTGGCTCTGAG CCTGGGCTTTGCGGGGCTGATCGAAGCCGCCGACGCCGCCACCAAGGTGCCGTTGCCGAAGCCGCGACCTTTGGCACGGA GTGCCGCCCCCAAGAACGTTGCGAAGTCGCTGCCGGCTCCGGATCCTCGCCCCTCGACCAAGCTTCCCGTCACCAGCCCT GCTGCAGCGGTCGAGCCGATGCGTCAGAGGCCGCCCGCCGCAGCGCTGCACAAGCCGGCGACACGCTCTGCGATCGCTGC GACCGCATCGACCTCCTCCGCCGATGCCGGCGCGCTCGAAAACGTCATCGAACTCGCCCGCAAGAAAAGGGCTGGCGAAG CCACCGAGGTCGCCAACACCATCTCCGATCCCGTCGCGCGCAAGCTTGCCGAATGGGTGATCCTGCGCAGCGAAGACAAC GGCGCCAGCGTCGAACGCTATGCAGCGTTCGTACGCGCCAATCCGAGCTGGCCATCGCAGAGCTTCCTTCGCCGCCGCGC CGAGGCCGCGCTGTGGGACGACAGTCGCGATGATTCAGCTGTGCTCGCTTACTTCGAAGACGAGCGCCCTTCGACCGGCA AGGGCAAACTGGCGTTGGCGCGCGCCCTGCTGGCGCGCGGGGACCGCCGCACCGCCGAGCAACTGGTACGCGACGCCTGG CGTAACGACACGATGTCGGACGCGACCGAAACCACCGCAATGGAATTGTTCGGGCCGCTGATCACTCCGAGCGATCACAA GGCGCGGATGGATTCGTTCCTGTACGGCGACGATCTCGGCCCGGCGCTACGCGCCGCCAAGCGTCTCGGCGGCGCTCAGA TGGCGCTCGCGCGAGCGCGGATCGCGGTCGACAAGAAGGCGTCGAACGGCAAGGCGCTGCTCGCGGCCGTCCCGTCCGAA CTGCACCACGACCCCGGCTATCTGTTCAGCAAGATCCAGGTGCTGCGCCGCGACGACATGATCGCGGAGGCCGGGCGGCT GATGCTGACGGTGCCGCGCGATCCGGCGCGGCTGCACAATCTCGACGAATGGTGGATCGAGCGCCGGCTGGTCGCGCGCA AGCTGATCGATATCGGCGATTATCGCCTAGCCTATCTGGTGGCGCGCGATGCGGCGACGCCGACCAAGGCGATCTACAGG ACCGAGCATGAATTCACTGCGGGCTGGATCGCGCTGCGGTTTCTGAATGATCCCGCCACCGCCGCGCAGCACTTCGCACG GCTCGGGCGCGACACGACGAACCCCACCGCACTGGCCCGCGCCGGCTATTGGCAAGGCCGCGCCGCAGAAGCCGCCGGGC GCATCCAGGAGGCGCGCGCCGCTTACTCGGCATCGGCGGCGCATTCCACCAGCTATTACGGTCAGTTGTCGCGCGCGAAG CTCGGTCTGGCGCAGCTCGATCTCAACGGTCCACCATCCGGTGGCCGCAATGCCGACCGGCTCGAGATCGTCCGCGCGGT GAGCCTGCTCTATGCGATCGATGAAGGCGAGATGGCGATTCCGATCTTCGCCGATGTCGGCGAGAACGGCGATGTCGACG CACTGATCGGGCTGAGCGAAGTCGCAGAACGGCGCAACGATGCGCGCGCGATGCTGCTGGTCGGCAAAGCCGCACTCAAT CGCGGTCTACCGTTCGATCACTACGCCTACCCGGTCAACGGCATTCCGCAGTTCCGCTCGGTAGGCCCCGACGTCGAACG CGCCATCGTCTATGCGATCGCCCGGCAGGAGAGCGCCTTCAATCCGGCAGTCGTCTCCCCCGCCAATGCTTATGGCCTGA TGCAGGTGACGCCCGACGCCGGCAAATACGTCTGCCGCCGTCACGGCTGCACCTTCGATCTGCAGCGTCTCAAAACCGAT TCGATTTACAACGCAGCGCTCGGCGCCGCCGAACTCGGCGGCCTGATCGAGGACTACCGCGGCTCCTACATCATGACCTT CGCCGGCTACAACGCCGGACGCGGCAGCGTCCGCAAATGGGTCGAGCGCTATGGCGATCCGCGGGATCCGAAGGTCGACG CGGTCGATTGGGTCGAACTGATTCCGTTCGCAGAGACGCGTAACTACGTGCAGCGGATCATCGAGAACCTGCAGGTCTAC CGCGCCCGCTTCGGCGGCGGCCAACGTCTGCAGATCGAAGCCGACCTCCGCCGCGGCGCCGGCGTAGGCGCCGAATAG
Upstream 100 bases:
>100_bases AAGCGGCGTCACGCGCCGCCTTTAGCATCGGCGCGCCTTCACTTCCGTAGGCGATGCTGCCAGAATCGCCGAATCGCCCC CACAGGGAGGCCGCAGCGTT
Downstream 100 bases:
>100_bases CGGCCGTCGGCCTTTGGCGGTCGGGATACCTTCCAGCGCTTCCTGCCGAGCAGCTCCAACGCATCGCTGAGTTTTCTCAG GATGATCGCTCTGCAGCGAG
Product: lytic transglycosylase
Products: 1,6-Anhydrobond [C]
Alternate protein names: Exomuramidase; Peptidoglycan lytic exotransglycosylase; Slt70 [H]
Number of amino acids: Translated: 745; Mature: 745
Protein sequence:
>745_residues MHPSSPSRRRPPFTVALKASTAILALSLGFAGLIEAADAATKVPLPKPRPLARSAAPKNVAKSLPAPDPRPSTKLPVTSP AAAVEPMRQRPPAAALHKPATRSAIAATASTSSADAGALENVIELARKKRAGEATEVANTISDPVARKLAEWVILRSEDN GASVERYAAFVRANPSWPSQSFLRRRAEAALWDDSRDDSAVLAYFEDERPSTGKGKLALARALLARGDRRTAEQLVRDAW RNDTMSDATETTAMELFGPLITPSDHKARMDSFLYGDDLGPALRAAKRLGGAQMALARARIAVDKKASNGKALLAAVPSE LHHDPGYLFSKIQVLRRDDMIAEAGRLMLTVPRDPARLHNLDEWWIERRLVARKLIDIGDYRLAYLVARDAATPTKAIYR TEHEFTAGWIALRFLNDPATAAQHFARLGRDTTNPTALARAGYWQGRAAEAAGRIQEARAAYSASAAHSTSYYGQLSRAK LGLAQLDLNGPPSGGRNADRLEIVRAVSLLYAIDEGEMAIPIFADVGENGDVDALIGLSEVAERRNDARAMLLVGKAALN RGLPFDHYAYPVNGIPQFRSVGPDVERAIVYAIARQESAFNPAVVSPANAYGLMQVTPDAGKYVCRRHGCTFDLQRLKTD SIYNAALGAAELGGLIEDYRGSYIMTFAGYNAGRGSVRKWVERYGDPRDPKVDAVDWVELIPFAETRNYVQRIIENLQVY RARFGGGQRLQIEADLRRGAGVGAE
Sequences:
>Translated_745_residues MHPSSPSRRRPPFTVALKASTAILALSLGFAGLIEAADAATKVPLPKPRPLARSAAPKNVAKSLPAPDPRPSTKLPVTSP AAAVEPMRQRPPAAALHKPATRSAIAATASTSSADAGALENVIELARKKRAGEATEVANTISDPVARKLAEWVILRSEDN GASVERYAAFVRANPSWPSQSFLRRRAEAALWDDSRDDSAVLAYFEDERPSTGKGKLALARALLARGDRRTAEQLVRDAW RNDTMSDATETTAMELFGPLITPSDHKARMDSFLYGDDLGPALRAAKRLGGAQMALARARIAVDKKASNGKALLAAVPSE LHHDPGYLFSKIQVLRRDDMIAEAGRLMLTVPRDPARLHNLDEWWIERRLVARKLIDIGDYRLAYLVARDAATPTKAIYR TEHEFTAGWIALRFLNDPATAAQHFARLGRDTTNPTALARAGYWQGRAAEAAGRIQEARAAYSASAAHSTSYYGQLSRAK LGLAQLDLNGPPSGGRNADRLEIVRAVSLLYAIDEGEMAIPIFADVGENGDVDALIGLSEVAERRNDARAMLLVGKAALN RGLPFDHYAYPVNGIPQFRSVGPDVERAIVYAIARQESAFNPAVVSPANAYGLMQVTPDAGKYVCRRHGCTFDLQRLKTD SIYNAALGAAELGGLIEDYRGSYIMTFAGYNAGRGSVRKWVERYGDPRDPKVDAVDWVELIPFAETRNYVQRIIENLQVY RARFGGGQRLQIEADLRRGAGVGAE >Mature_745_residues MHPSSPSRRRPPFTVALKASTAILALSLGFAGLIEAADAATKVPLPKPRPLARSAAPKNVAKSLPAPDPRPSTKLPVTSP AAAVEPMRQRPPAAALHKPATRSAIAATASTSSADAGALENVIELARKKRAGEATEVANTISDPVARKLAEWVILRSEDN GASVERYAAFVRANPSWPSQSFLRRRAEAALWDDSRDDSAVLAYFEDERPSTGKGKLALARALLARGDRRTAEQLVRDAW RNDTMSDATETTAMELFGPLITPSDHKARMDSFLYGDDLGPALRAAKRLGGAQMALARARIAVDKKASNGKALLAAVPSE LHHDPGYLFSKIQVLRRDDMIAEAGRLMLTVPRDPARLHNLDEWWIERRLVARKLIDIGDYRLAYLVARDAATPTKAIYR TEHEFTAGWIALRFLNDPATAAQHFARLGRDTTNPTALARAGYWQGRAAEAAGRIQEARAAYSASAAHSTSYYGQLSRAK LGLAQLDLNGPPSGGRNADRLEIVRAVSLLYAIDEGEMAIPIFADVGENGDVDALIGLSEVAERRNDARAMLLVGKAALN RGLPFDHYAYPVNGIPQFRSVGPDVERAIVYAIARQESAFNPAVVSPANAYGLMQVTPDAGKYVCRRHGCTFDLQRLKTD SIYNAALGAAELGGLIEDYRGSYIMTFAGYNAGRGSVRKWVERYGDPRDPKVDAVDWVELIPFAETRNYVQRIIENLQVY RARFGGGQRLQIEADLRRGAGVGAE
Specific function: Murein-degrading enzyme. Catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N- acetylglucosamine residues in peptidoglycan. May play a role in recycling of muropeptides during cell elongation and/or cell division [H]
COG id: COG0741
COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)
Gene ontology:
Cell location: Periplasm. Note=Tightly associated with the murein sacculus (By similarity) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transglycosylase slt family [H]
Homologues:
Organism=Escherichia coli, GI87082441, Length=171, Percent_Identity=33.3333333333333, Blast_Score=84, Evalue=3e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016026 - InterPro: IPR008258 - InterPro: IPR012289 - InterPro: IPR008939 - InterPro: IPR000189 [H]
Pfam domain/function: PF01464 SLT [H]
EC number: 3.2.1.- [C]
Molecular weight: Translated: 80967; Mature: 80967
Theoretical pI: Translated: 9.89; Mature: 9.89
Prosite motif: PS00922 TRANSGLYCOSYLASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHPSSPSRRRPPFTVALKASTAILALSLGFAGLIEAADAATKVPLPKPRPLARSAAPKNV CCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCHHH AKSLPAPDPRPSTKLPVTSPAAAVEPMRQRPPAAALHKPATRSAIAATASTSSADAGALE HHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHCCCCHHHHHHEECCCCCCCHHHHH NVIELARKKRAGEATEVANTISDPVARKLAEWVILRSEDNGASVERYAAFVRANPSWPSQ HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHCCCCCCCHH SFLRRRAEAALWDDSRDDSAVLAYFEDERPSTGKGKLALARALLARGDRRTAEQLVRDAW HHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHH RNDTMSDATETTAMELFGPLITPSDHKARMDSFLYGDDLGPALRAAKRLGGAQMALARAR CCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHH IAVDKKASNGKALLAAVPSELHHDPGYLFSKIQVLRRDDMIAEAGRLMLTVPRDPARLHN HHCCCCCCCCCEEEEECCHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCC LDEWWIERRLVARKLIDIGDYRLAYLVARDAATPTKAIYRTEHEFTAGWIALRFLNDPAT CHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHCCCCCCEEEEEEEEECCHHH AAQHFARLGRDTTNPTALARAGYWQGRAAEAAGRIQEARAAYSASAAHSTSYYGQLSRAK HHHHHHHHCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH LGLAQLDLNGPPSGGRNADRLEIVRAVSLLYAIDEGEMAIPIFADVGENGDVDALIGLSE CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHEECCCCEEEEEEEECCCCCCHHHHHHHHH VAERRNDARAMLLVGKAALNRGLPFDHYAYPVNGIPQFRSVGPDVERAIVYAIARQESAF HHHHHCCCCEEEEEEHHHHHCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCCC NPAVVSPANAYGLMQVTPDAGKYVCRRHGCTFDLQRLKTDSIYNAALGAAELGGLIEDYR CCCEECCCCCCEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GSYIMTFAGYNAGRGSVRKWVERYGDPRDPKVDAVDWVELIPFAETRNYVQRIIENLQVY CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHH RARFGGGQRLQIEADLRRGAGVGAE HHHCCCCCEEEEEECHHCCCCCCCC >Mature Secondary Structure MHPSSPSRRRPPFTVALKASTAILALSLGFAGLIEAADAATKVPLPKPRPLARSAAPKNV CCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCHHH AKSLPAPDPRPSTKLPVTSPAAAVEPMRQRPPAAALHKPATRSAIAATASTSSADAGALE HHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHCCCCHHHHHHEECCCCCCCHHHHH NVIELARKKRAGEATEVANTISDPVARKLAEWVILRSEDNGASVERYAAFVRANPSWPSQ HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHCCCCCCCHH SFLRRRAEAALWDDSRDDSAVLAYFEDERPSTGKGKLALARALLARGDRRTAEQLVRDAW HHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHH RNDTMSDATETTAMELFGPLITPSDHKARMDSFLYGDDLGPALRAAKRLGGAQMALARAR CCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHH IAVDKKASNGKALLAAVPSELHHDPGYLFSKIQVLRRDDMIAEAGRLMLTVPRDPARLHN HHCCCCCCCCCEEEEECCHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCC LDEWWIERRLVARKLIDIGDYRLAYLVARDAATPTKAIYRTEHEFTAGWIALRFLNDPAT CHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHCCCCCCEEEEEEEEECCHHH AAQHFARLGRDTTNPTALARAGYWQGRAAEAAGRIQEARAAYSASAAHSTSYYGQLSRAK HHHHHHHHCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH LGLAQLDLNGPPSGGRNADRLEIVRAVSLLYAIDEGEMAIPIFADVGENGDVDALIGLSE CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHEECCCCEEEEEEEECCCCCCHHHHHHHHH VAERRNDARAMLLVGKAALNRGLPFDHYAYPVNGIPQFRSVGPDVERAIVYAIARQESAF HHHHHCCCCEEEEEEHHHHHCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCCC NPAVVSPANAYGLMQVTPDAGKYVCRRHGCTFDLQRLKTDSIYNAALGAAELGGLIEDYR CCCEECCCCCCEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GSYIMTFAGYNAGRGSVRKWVERYGDPRDPKVDAVDWVELIPFAETRNYVQRIIENLQVY CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHH RARFGGGQRLQIEADLRRGAGVGAE HHHCCCCCEEEEEECHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Muramic Acid Residue (N-Acetylmuramic Acid And N-Acetylglucosamine Residues) [C]
Specific reaction: Cleavage Of The Beta-1,4-Glycosidic Bond Between N-Acetylmuramic Acid And N-Acetylglucosamine Residues, Thereby Conserving The Energy In A Newly Synthesized 1,6-Anhydrobond In The Muramic Acid Residue. [C]
General reaction: Cleavage Of The Beta-1,4-Glycosidic Bond [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]