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The map label for this gene is 192291025

Identifier: 192291025

GI number: 192291025

Start: 2867587

End: 2869011

Strand: Reverse

Name: 192291025

Synonym: Rpal_2644

Alternate gene names: NA

Gene position: 2869011-2867587 (Counterclockwise)

Preceding gene: 192291039

Following gene: 192291024

Centisome position: 49.95

GC content: 63.09

Gene sequence:

>1425_bases
ATGAAGAAAGCGTATGTAGGAGCGCGTCTGCGGCGGCTGCGCGAGCAGCGCGGCATGACCCAGCAGGCGCTCGCCACCGC
CGTCGGCGTTTCGCCGAGCTACCTCAATCAGATCGAGAACAACCAGCGTCCGTTGACGGTCCCGGTGTTGCTGAAGCTCA
ACGCGACGCTCGGCATCGACGTTCAGTTATTCTCTGAGGACGACGAGGCGCGACTGATCGCCGACCTCAAGGAAGTGCTG
TCCGACCCGATGGTCGGCGAAAGCCTGACCGCAAACGACGTGCGTGAGCTTGTAACCAGCATGCCCGCAGCCGGCCGCGC
CTTAGTGGCAATTTATCGGCGTTATCACCTCGCGCTGGAGCAGTCAGCAGCCCTCGCCGCCCGTCTCGGGGACGATCGGC
AAGACCGACCGACGTCCGCCATGTCCACGCCGTTCGAAGAGGTTCGCGACTTCTTCTACGCAAGACATAACTACATCGCC
GAGCTCGACGAAGCGGCGGAACGAACGGCCGCGGGCACCGGACGAACAATCCAGCAGGTCGCGGCCTCGCTGGCTGAACG
ACTGAAGTCGCACCACGGCATCGACGTCCGCGTCGGCGAAACCGGCGATGCCTCGGCGGATCTTCAGCGCAACTTTGACT
CTGGCGACAAGACGCTTCGACTTTCGGCTCGACTGCAGCCCGGCCAACAGGCGTTTCAGATCGGTACCCAACTCGCCTTC
CTGGAGCATCGCGACACGATCGATGCGCTCGTCGGCGAAAATCCGTTCGGCGACGAGGCGTCGCGCAGACTGGCACGGAT
TGGACTTGCGAATTATTTTGCAGGGGCGCTGCTGCTCCCCTACGCGGGCTTCCGGGAGAAGGCCGAGTCGGTCCGTTACG
ACATCACGTTAATCGGTCAGCATTTCGGCGTCGGCTACGAGACCGTTTGCCACCGTCTCAGCACCTTGCAGCGACCGGGT
GCTCGCGGGGTTCCGTTCTTCTTCATCCGCGTCGATCGCGCAGGCAACATTTCGAAACGGCAGTCGGCGACCGATTTCCA
TTTCTCGCGCGGCGGCGGAACGTGTCCACTATGGAATGTCTACGAGGCGTTCTCGCAACCGGACCGGATCCTCACGCAGC
TGGCGCGAATGCCCGACCACCGGACCTATCTGTGGGTGGCGCGCACGGTGTCGCACGATCAGGCAGGTTACCACGCGCCC
CGGAAGACTTTTGCCGTCGCGCTGGGATGCGATCTGCAGCACGCCGGGCGCCTCGTTTATTCGGACGGACTCGATCTCAC
CAACCCGGCAGCGGCCACGCCCATCGGAGCGGGTTGTCGGATCTGCGAACGGCAAGCCTGCCCGCAACGCGCTTTCCCTC
CGGTCGGCCGCCCACTCCACGTCGATGAAAATCGCAACTCGTTCTCACCCTATTCGACGAATTGA

Upstream 100 bases:

>100_bases
TTGGCGAACGCGGGCCGCCGTAAAGGACTAAACCTGCGAAGAATTGCGAAGCGGGGGACGGCGATTTGCAAAGATTGCGA
AGGTGATCTGCGGAGGTGCG

Downstream 100 bases:

>100_bases
CCTGATCCGGGGGAGACAAAACAGTGCGTATCGGAAACGCCTCGGTGGAGCATGACGTCGGACAAGCAGGGTGATTACAA
GCGGTATGTGTGGTTCAGTC

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 474; Mature: 474

Protein sequence:

>474_residues
MKKAYVGARLRRLREQRGMTQQALATAVGVSPSYLNQIENNQRPLTVPVLLKLNATLGIDVQLFSEDDEARLIADLKEVL
SDPMVGESLTANDVRELVTSMPAAGRALVAIYRRYHLALEQSAALAARLGDDRQDRPTSAMSTPFEEVRDFFYARHNYIA
ELDEAAERTAAGTGRTIQQVAASLAERLKSHHGIDVRVGETGDASADLQRNFDSGDKTLRLSARLQPGQQAFQIGTQLAF
LEHRDTIDALVGENPFGDEASRRLARIGLANYFAGALLLPYAGFREKAESVRYDITLIGQHFGVGYETVCHRLSTLQRPG
ARGVPFFFIRVDRAGNISKRQSATDFHFSRGGGTCPLWNVYEAFSQPDRILTQLARMPDHRTYLWVARTVSHDQAGYHAP
RKTFAVALGCDLQHAGRLVYSDGLDLTNPAAATPIGAGCRICERQACPQRAFPPVGRPLHVDENRNSFSPYSTN

Sequences:

>Translated_474_residues
MKKAYVGARLRRLREQRGMTQQALATAVGVSPSYLNQIENNQRPLTVPVLLKLNATLGIDVQLFSEDDEARLIADLKEVL
SDPMVGESLTANDVRELVTSMPAAGRALVAIYRRYHLALEQSAALAARLGDDRQDRPTSAMSTPFEEVRDFFYARHNYIA
ELDEAAERTAAGTGRTIQQVAASLAERLKSHHGIDVRVGETGDASADLQRNFDSGDKTLRLSARLQPGQQAFQIGTQLAF
LEHRDTIDALVGENPFGDEASRRLARIGLANYFAGALLLPYAGFREKAESVRYDITLIGQHFGVGYETVCHRLSTLQRPG
ARGVPFFFIRVDRAGNISKRQSATDFHFSRGGGTCPLWNVYEAFSQPDRILTQLARMPDHRTYLWVARTVSHDQAGYHAP
RKTFAVALGCDLQHAGRLVYSDGLDLTNPAAATPIGAGCRICERQACPQRAFPPVGRPLHVDENRNSFSPYSTN
>Mature_474_residues
MKKAYVGARLRRLREQRGMTQQALATAVGVSPSYLNQIENNQRPLTVPVLLKLNATLGIDVQLFSEDDEARLIADLKEVL
SDPMVGESLTANDVRELVTSMPAAGRALVAIYRRYHLALEQSAALAARLGDDRQDRPTSAMSTPFEEVRDFFYARHNYIA
ELDEAAERTAAGTGRTIQQVAASLAERLKSHHGIDVRVGETGDASADLQRNFDSGDKTLRLSARLQPGQQAFQIGTQLAF
LEHRDTIDALVGENPFGDEASRRLARIGLANYFAGALLLPYAGFREKAESVRYDITLIGQHFGVGYETVCHRLSTLQRPG
ARGVPFFFIRVDRAGNISKRQSATDFHFSRGGGTCPLWNVYEAFSQPDRILTQLARMPDHRTYLWVARTVSHDQAGYHAP
RKTFAVALGCDLQHAGRLVYSDGLDLTNPAAATPIGAGCRICERQACPQRAFPPVGRPLHVDENRNSFSPYSTN

Specific function: Unknown

COG id: COG3800

COG function: function code R; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018653
- InterPro:   IPR010359
- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF09856 DUF2083; PF06114 DUF955; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 52352; Mature: 52352

Theoretical pI: Translated: 8.36; Mature: 8.36

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKAYVGARLRRLREQRGMTQQALATAVGVSPSYLNQIENNQRPLTVPVLLKLNATLGID
CCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEEEECCEECEE
VQLFSEDDEARLIADLKEVLSDPMVGESLTANDVRELVTSMPAAGRALVAIYRRYHLALE
EEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
QSAALAARLGDDRQDRPTSAMSTPFEEVRDFFYARHNYIAELDEAAERTAAGTGRTIQQV
HHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
AASLAERLKSHHGIDVRVGETGDASADLQRNFDSGDKTLRLSARLQPGQQAFQIGTQLAF
HHHHHHHHHHCCCCEEEECCCCCCCHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHH
LEHRDTIDALVGENPFGDEASRRLARIGLANYFAGALLLPYAGFREKAESVRYDITLIGQ
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHEEEEEEEEC
HFGVGYETVCHRLSTLQRPGARGVPFFFIRVDRAGNISKRQSATDFHFSRGGGTCPLWNV
HHCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHCCCCCCEECCCCCCCCHHHH
YEAFSQPDRILTQLARMPDHRTYLWVARTVSHDQAGYHAPRKTFAVALGCDLQHAGRLVY
HHHHCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCHHHEEEEECCCHHHCCCEEE
SDGLDLTNPAAATPIGAGCRICERQACPQRAFPPVGRPLHVDENRNSFSPYSTN
ECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCC
>Mature Secondary Structure
MKKAYVGARLRRLREQRGMTQQALATAVGVSPSYLNQIENNQRPLTVPVLLKLNATLGID
CCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEEEECCEECEE
VQLFSEDDEARLIADLKEVLSDPMVGESLTANDVRELVTSMPAAGRALVAIYRRYHLALE
EEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
QSAALAARLGDDRQDRPTSAMSTPFEEVRDFFYARHNYIAELDEAAERTAAGTGRTIQQV
HHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
AASLAERLKSHHGIDVRVGETGDASADLQRNFDSGDKTLRLSARLQPGQQAFQIGTQLAF
HHHHHHHHHHCCCCEEEECCCCCCCHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHH
LEHRDTIDALVGENPFGDEASRRLARIGLANYFAGALLLPYAGFREKAESVRYDITLIGQ
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHEEEEEEEEC
HFGVGYETVCHRLSTLQRPGARGVPFFFIRVDRAGNISKRQSATDFHFSRGGGTCPLWNV
HHCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHCCCCCCEECCCCCCCCHHHH
YEAFSQPDRILTQLARMPDHRTYLWVARTVSHDQAGYHAPRKTFAVALGCDLQHAGRLVY
HHHHCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCHHHEEEEECCCHHHCCCEEE
SDGLDLTNPAAATPIGAGCRICERQACPQRAFPPVGRPLHVDENRNSFSPYSTN
ECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]