| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is 192290967
Identifier: 192290967
GI number: 192290967
Start: 2791883
End: 2793256
Strand: Reverse
Name: 192290967
Synonym: Rpal_2584
Alternate gene names: NA
Gene position: 2793256-2791883 (Counterclockwise)
Preceding gene: 192290968
Following gene: 192290965
Centisome position: 48.63
GC content: 63.76
Gene sequence:
>1374_bases ATGGACTCCACATGCGTCAACATCCCGGCTTGGGAAATCCGGCACCGGATCTCCCTTGATGAGGCCAGCTCGCTTCCGTG CCTTGCGGAGGTCGATGTTCTCGTCGTCGGCGGCGGCGCATCCGGCGTAGCTGCGGCCACCGTTGCCGCAGAGTCCAATT GCTCGACCATCTTAGTCGAGCGCTACGGATTTTGCGGCGGTGCCGCCGTCGCAGGACTATCGGGGACGATCTGCGGTCTG TTTCTGGCTAGCGAACAGAGCAAGCCGAAGCAGGTCGTCTTCGGGTTTTCCGAACGATTCAGATCCGAACTCGCCAGACG CGGCGGCGTCACCCCGCCGCAGAAGTACGGCAAGACGTTCGTCGTCACCCATGATCCTCTCAAATGGCGCGAGACCGCCG ACTCCCTGCTGACGGTGTCGGGCGTCAGGGTGCTGTTCCACACCGTCGTGGTCGCGGTGATCATGGACGGCAATCGCCAC CTCGGCGTGGTGATCGAGTCCAATGCCGGCCGCTCGGTGATCCTTGCCAAACGCACGATCGACGCATCCGGAGATGCCGC CGTCGTTGCCCGCGCCGGTCATCCGTGGCGGTTCGGCGACCAGGGCCGCATTCAGAACCCGACAATGTTCTTCCGCCTCG GTGGGGTCGACGTCGACCGTTTCGTCGCACATTGGGGCGAAGACACGATCTCTCCGCCGGAAATCGTGGAGGCGCTCACA GCCGCCGATCGACGGAATTACGATCTTCCCCGGAAGAAGATCTGGATCTTTCCGACCACACAGCCCGGCGAACTGCTCGT CAACGCGACCCGGCTGTCGGCGCGTGACGGCTCGATGCTCAACGTCATCAATCCGGAGGATTGGACCGTCGCCGAGATCG ATGGACGCCGCCAGGTGCGGGAGTACGCAAGGTTTCTAGCGGCCCACGTGGAAGGCTGTGAACGCAGCTTCGTCATCGAT ACGGGCGTGGAGTGCGGCGTTCGGCAGACCCGTTCAATCGAGGGCCTTCAGACTTTGACGAACGACGATGTCGTCGCGGG GACCAAACGGCCGGATTCGATCTGCCGTTCCCCCTGGCCGATCGAGCTGCACGCCGGCGACAAGCCGAAGCTGCACTGGC TGCTGGACGACTACTACGACGTCCCGTTTGGAGCGCTCATCCCCGCGGCCGGCGAAAACATCGTCGTTGCAGGCCGCTGC CTGTCGGCCGAACACGAAGCTCTCGCCTCCGCGCGCGTGACTGCTCAGTGCTTCGAATACGGCCATGCCGCCGGCGTCGC CGCAGCCCTATCGATCTCGGGTGGCGCTCCGCTGCATTTGCTTGAGCCGGCTGCGATTGCCGAACGGATGAAGAAAGCCG GCAGCGCTCTATGA
Upstream 100 bases:
>100_bases GCCGCTCTCGAAGGGAGCCGTACTCGGCGATCGAAGCCGTCGCTGATAGCGCAGCCGCAGCCGCGCCCCCGAGCCGCTAG TCATAAGCGAGGTTATTTTG
Downstream 100 bases:
>100_bases GAGCTCGGTGATATCGAAACGCGAGCCATTCGTGCTCGCGTGTCGTGCTGGCGAGTTCAAGACCTCAGCAACAGCCTGAC GCCCATTGCTCAGCTAGGCC
Product: FAD dependent oxidoreductase
Products: NA
Alternate protein names: Invasion Protein IbeA; Glucose-Inhibited Division Protein A; Fumarate Reductase/Succinate Dehydrogenase Flavoprotein; Dihydrolipoamide Dehydrogenase; FAD-Dependent Pyridine Nucleotide-Disulfide Oxidoreductase; Thiamine Biosynthesis Thi4 Protein; Invasion Protein IbeA Family Protein; Protein Involved In Invasion; FAD Dependent Oxidoreductase Domain Protein; Invasion Protein; Pyridine Nucleotide-Disulfide Oxidoreductase Family; tRNA Uridine 5-Carboxymethylaminomethyl GidA
Number of amino acids: Translated: 457; Mature: 457
Protein sequence:
>457_residues MDSTCVNIPAWEIRHRISLDEASSLPCLAEVDVLVVGGGASGVAAATVAAESNCSTILVERYGFCGGAAVAGLSGTICGL FLASEQSKPKQVVFGFSERFRSELARRGGVTPPQKYGKTFVVTHDPLKWRETADSLLTVSGVRVLFHTVVVAVIMDGNRH LGVVIESNAGRSVILAKRTIDASGDAAVVARAGHPWRFGDQGRIQNPTMFFRLGGVDVDRFVAHWGEDTISPPEIVEALT AADRRNYDLPRKKIWIFPTTQPGELLVNATRLSARDGSMLNVINPEDWTVAEIDGRRQVREYARFLAAHVEGCERSFVID TGVECGVRQTRSIEGLQTLTNDDVVAGTKRPDSICRSPWPIELHAGDKPKLHWLLDDYYDVPFGALIPAAGENIVVAGRC LSAEHEALASARVTAQCFEYGHAAGVAAALSISGGAPLHLLEPAAIAERMKKAGSAL
Sequences:
>Translated_457_residues MDSTCVNIPAWEIRHRISLDEASSLPCLAEVDVLVVGGGASGVAAATVAAESNCSTILVERYGFCGGAAVAGLSGTICGL FLASEQSKPKQVVFGFSERFRSELARRGGVTPPQKYGKTFVVTHDPLKWRETADSLLTVSGVRVLFHTVVVAVIMDGNRH LGVVIESNAGRSVILAKRTIDASGDAAVVARAGHPWRFGDQGRIQNPTMFFRLGGVDVDRFVAHWGEDTISPPEIVEALT AADRRNYDLPRKKIWIFPTTQPGELLVNATRLSARDGSMLNVINPEDWTVAEIDGRRQVREYARFLAAHVEGCERSFVID TGVECGVRQTRSIEGLQTLTNDDVVAGTKRPDSICRSPWPIELHAGDKPKLHWLLDDYYDVPFGALIPAAGENIVVAGRC LSAEHEALASARVTAQCFEYGHAAGVAAALSISGGAPLHLLEPAAIAERMKKAGSAL >Mature_457_residues MDSTCVNIPAWEIRHRISLDEASSLPCLAEVDVLVVGGGASGVAAATVAAESNCSTILVERYGFCGGAAVAGLSGTICGL FLASEQSKPKQVVFGFSERFRSELARRGGVTPPQKYGKTFVVTHDPLKWRETADSLLTVSGVRVLFHTVVVAVIMDGNRH LGVVIESNAGRSVILAKRTIDASGDAAVVARAGHPWRFGDQGRIQNPTMFFRLGGVDVDRFVAHWGEDTISPPEIVEALT AADRRNYDLPRKKIWIFPTTQPGELLVNATRLSARDGSMLNVINPEDWTVAEIDGRRQVREYARFLAAHVEGCERSFVID TGVECGVRQTRSIEGLQTLTNDDVVAGTKRPDSICRSPWPIELHAGDKPKLHWLLDDYYDVPFGALIPAAGENIVVAGRC LSAEHEALASARVTAQCFEYGHAAGVAAALSISGGAPLHLLEPAAIAERMKKAGSAL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49101; Mature: 49101
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDSTCVNIPAWEIRHRISLDEASSLPCLAEVDVLVVGGGASGVAAATVAAESNCSTILVE CCCCEECCCHHHHHEEECCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCEEEEE RYGFCGGAAVAGLSGTICGLFLASEQSKPKQVVFGFSERFRSELARRGGVTPPQKYGKTF CCCCCCCHHHHCCCHHEEEEEEECCCCCCHHEEECHHHHHHHHHHHHCCCCCHHHHCCEE VVTHDPLKWRETADSLLTVSGVRVLFHTVVVAVIMDGNRHLGVVIESNAGRSVILAKRTI EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEEEECCCCCEEEEEEEEE DASGDAAVVARAGHPWRFGDQGRIQNPTMFFRLGGVDVDRFVAHWGEDTISPPEIVEALT CCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCCCCCCCHHHHHHHH AADRRNYDLPRKKIWIFPTTQPGELLVNATRLSARDGSMLNVINPEDWTVAEIDGRRQVR HHHCCCCCCCCCEEEEEECCCCCCEEEEEEEECCCCCCEEEEECCCCCEEEECCCHHHHH EYARFLAAHVEGCERSFVIDTGVECGVRQTRSIEGLQTLTNDDVVAGTKRPDSICRSPWP HHHHHHHHHHHCCCCEEEEECCCCCCCHHHCCCCHHHHCCCCCEEECCCCCHHHHCCCCC IELHAGDKPKLHWLLDDYYDVPFGALIPAAGENIVVAGRCLSAEHEALASARVTAQCFEY EEEECCCCCCEEEEECCCCCCCHHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH GHAAGVAAALSISGGAPLHLLEPAAIAERMKKAGSAL CCHHCEEEEEEECCCCCEEEECHHHHHHHHHHHCCCC >Mature Secondary Structure MDSTCVNIPAWEIRHRISLDEASSLPCLAEVDVLVVGGGASGVAAATVAAESNCSTILVE CCCCEECCCHHHHHEEECCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCEEEEE RYGFCGGAAVAGLSGTICGLFLASEQSKPKQVVFGFSERFRSELARRGGVTPPQKYGKTF CCCCCCCHHHHCCCHHEEEEEEECCCCCCHHEEECHHHHHHHHHHHHCCCCCHHHHCCEE VVTHDPLKWRETADSLLTVSGVRVLFHTVVVAVIMDGNRHLGVVIESNAGRSVILAKRTI EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEEEECCCCCEEEEEEEEE DASGDAAVVARAGHPWRFGDQGRIQNPTMFFRLGGVDVDRFVAHWGEDTISPPEIVEALT CCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCCCCCCCHHHHHHHH AADRRNYDLPRKKIWIFPTTQPGELLVNATRLSARDGSMLNVINPEDWTVAEIDGRRQVR HHHCCCCCCCCCEEEEEECCCCCCEEEEEEEECCCCCCEEEEECCCCCEEEECCCHHHHH EYARFLAAHVEGCERSFVIDTGVECGVRQTRSIEGLQTLTNDDVVAGTKRPDSICRSPWP HHHHHHHHHHHCCCCEEEEECCCCCCCHHHCCCCHHHHCCCCCEEECCCCCHHHHCCCCC IELHAGDKPKLHWLLDDYYDVPFGALIPAAGENIVVAGRCLSAEHEALASARVTAQCFEY EEEECCCCCCEEEEECCCCCCCHHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH GHAAGVAAALSISGGAPLHLLEPAAIAERMKKAGSAL CCHHCEEEEEEECCCCCEEEECHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA